forked from D-Net/dnet-hadoop
644 lines
29 KiB
XML
644 lines
29 KiB
XML
<workflow-app name="create RAW Graph (all steps)" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>outputGraph</name>
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<description>the target graph name (or path)</description>
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</property>
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<property>
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<name>graphFormat</name>
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<value>HIVE</value>
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<description>the graph data format</description>
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</property>
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<property>
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<name>reuseContent</name>
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<value>false</value>
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<description>should import content from the aggregator or reuse a previous version</description>
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</property>
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<property>
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<name>contentPath</name>
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<description>path location to store (or reuse) content from the aggregator</description>
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</property>
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<property>
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<name>postgresURL</name>
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<description>the postgres URL to access to the database</description>
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</property>
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<property>
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<name>postgresUser</name>
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<description>the user postgres</description>
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</property>
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<property>
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<name>postgresPassword</name>
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<description>the password postgres</description>
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</property>
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<property>
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<name>dbSchema</name>
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<value>beta</value>
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<description>the database schema according to the D-Net infrastructure (beta or production)</description>
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</property>
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<property>
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<name>mongoURL</name>
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<description>mongoDB url, example: mongodb://[username:password@]host[:port]</description>
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</property>
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<property>
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<name>mongoDb</name>
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<description>mongo database</description>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>nsPrefixBlacklist</name>
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<value></value>
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<description>a blacklist of nsprefixes (comma separeted)</description>
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</property>
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<property>
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<name>hiveMetastoreUris</name>
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<description>hive server metastore URIs</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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<property>
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<name>sparkSqlWarehouseDir</name>
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<value>spark 2.* db directory location</value>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="reuse_aggregator_content"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<decision name="reuse_aggregator_content">
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<switch>
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<case to="start_import">${wf:conf('reuseContent') eq false}</case>
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<case to="fork_generate_entities">${wf:conf('reuseContent') eq true}</case>
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<default to="start_import"/>
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</switch>
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</decision>
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<fork name="start_import">
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<path start="ImportDB"/>
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<path start="ImportDB_claims"/>
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</fork>
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<action name="ImportDB_claims">
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<java>
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<prepare>
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<delete path="${contentPath}/db_claims"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateDbEntitiesApplication</main-class>
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<arg>--hdfsPath</arg><arg>${contentPath}/db_claims</arg>
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<arg>--postgresUrl</arg><arg>${postgresURL}</arg>
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<arg>--postgresUser</arg><arg>${postgresUser}</arg>
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<arg>--postgresPassword</arg><arg>${postgresPassword}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--action</arg><arg>claims</arg>
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<arg>--dbschema</arg><arg>${dbSchema}</arg>
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<arg>--nsPrefixBlacklist</arg><arg>${nsPrefixBlacklist}</arg>
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</java>
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<ok to="ImportODF_claims"/>
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<error to="Kill"/>
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</action>
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<action name="ImportODF_claims">
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<java>
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<prepare>
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<delete path="${contentPath}/odf_claims"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication</main-class>
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<arg>-p</arg><arg>${contentPath}/odf_claims</arg>
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<arg>-mongourl</arg><arg>${mongoURL}</arg>
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<arg>-mongodb</arg><arg>${mongoDb}</arg>
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<arg>-f</arg><arg>ODF</arg>
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<arg>-l</arg><arg>store</arg>
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<arg>-i</arg><arg>claim</arg>
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</java>
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<ok to="ImportOAF_claims"/>
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<error to="Kill"/>
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</action>
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<action name="ImportOAF_claims">
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<java>
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<prepare>
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<delete path="${contentPath}/oaf_claims"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication</main-class>
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<arg>-p</arg><arg>${contentPath}/oaf_claims</arg>
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<arg>-mongourl</arg><arg>${mongoURL}</arg>
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<arg>-mongodb</arg><arg>${mongoDb}</arg>
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<arg>-f</arg><arg>OAF</arg>
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<arg>-l</arg><arg>store</arg>
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<arg>-i</arg><arg>claim</arg>
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</java>
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<ok to="wait_import"/>
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<error to="Kill"/>
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</action>
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<action name="ImportDB">
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<java>
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<prepare>
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<delete path="${contentPath}/db_records"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateDbEntitiesApplication</main-class>
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<arg>--hdfsPath</arg><arg>${contentPath}/db_records</arg>
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<arg>--postgresUrl</arg><arg>${postgresURL}</arg>
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<arg>--postgresUser</arg><arg>${postgresUser}</arg>
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<arg>--postgresPassword</arg><arg>${postgresPassword}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--dbschema</arg><arg>${dbSchema}</arg>
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<arg>--nsPrefixBlacklist</arg><arg>${nsPrefixBlacklist}</arg>
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</java>
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<ok to="ImportODF"/>
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<error to="Kill"/>
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</action>
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<action name="ImportODF">
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<java>
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<prepare>
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<delete path="${contentPath}/odf_records"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication</main-class>
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<arg>--hdfsPath</arg><arg>${contentPath}/odf_records</arg>
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<arg>--mongoBaseUrl</arg><arg>${mongoURL}</arg>
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<arg>--mongoDb</arg><arg>${mongoDb}</arg>
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<arg>--mdFormat</arg><arg>ODF</arg>
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<arg>--mdLayout</arg><arg>store</arg>
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<arg>--mdInterpretation</arg><arg>cleaned</arg>
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</java>
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<ok to="ImportOAF"/>
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<error to="Kill"/>
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</action>
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<action name="ImportOAF">
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<java>
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<prepare>
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<delete path="${contentPath}/oaf_records"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication</main-class>
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<arg>--hdfsPath</arg><arg>${contentPath}/oaf_records</arg>
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<arg>--mongoBaseUrl</arg><arg>${mongoURL}</arg>
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<arg>--mongoDb</arg><arg>${mongoDb}</arg>
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<arg>--mdFormat</arg><arg>OAF</arg>
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<arg>--mdLayout</arg><arg>store</arg>
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<arg>--mdInterpretation</arg><arg>cleaned</arg>
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</java>
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<ok to="ImportOAF_invisible"/>
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<error to="Kill"/>
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</action>
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<action name="ImportOAF_invisible">
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<java>
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<prepare>
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<delete path="${contentPath}/oaf_records_invisible"/>
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</prepare>
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<main-class>eu.dnetlib.dhp.oa.graph.raw.MigrateMongoMdstoresApplication</main-class>
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<arg>--hdfsPath</arg><arg>${contentPath}/oaf_records_invisible</arg>
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<arg>--mongoBaseUrl</arg><arg>${mongoURL}</arg>
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<arg>--mongoDb</arg><arg>${mongoDb}</arg>
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<arg>--mdFormat</arg><arg>OAF</arg>
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<arg>--mdLayout</arg><arg>store</arg>
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<arg>--mdInterpretation</arg><arg>intersection</arg>
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</java>
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<ok to="wait_import"/>
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<error to="Kill"/>
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</action>
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<join name="wait_import" to="fork_generate_entities"/>
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<fork name="fork_generate_entities">
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<path start="GenerateEntities_claim"/>
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<path start="GenerateEntities"/>
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</fork>
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<action name="GenerateEntities_claim">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateEntities_claim</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePaths</arg><arg>${contentPath}/db_claims,${contentPath}/oaf_claims,${contentPath}/odf_claims,${contentPath}/oaf_records_invisible</arg>
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<arg>--targetPath</arg><arg>${workingDir}/entities_claim</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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</spark>
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<ok to="GenerateGraph_claims"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateGraph_claims">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateGraph_claims</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.DispatchEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${workingDir}/entities_claim</arg>
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<arg>--graphRawPath</arg><arg>${workingDir}/graph_claims</arg>
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</spark>
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<ok to="wait_graphs"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateEntities">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateEntities</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePaths</arg><arg>${contentPath}/db_records,${contentPath}/oaf_records,${contentPath}/odf_records</arg>
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<arg>--targetPath</arg><arg>${workingDir}/entities</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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</spark>
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<ok to="GenerateGraph"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateGraph">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateGraph</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.DispatchEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--sourcePath</arg><arg>${workingDir}/entities</arg>
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<arg>--graphRawPath</arg><arg>${workingDir}/graph_raw</arg>
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</spark>
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<ok to="wait_graphs"/>
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<error to="Kill"/>
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</action>
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<join name="wait_graphs" to="should_drop_db"/>
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<decision name="should_drop_db">
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<switch>
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<case to="fork_merge_claims">${wf:conf('graphFormat') eq 'JSON'}</case>
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<case to="reset_DB">${wf:conf('graphFormat') eq 'HIVE'}</case>
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<default to="reset_DB"/>
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</switch>
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</decision>
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<action name="reset_DB">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>reset_DB</name>
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<class>eu.dnetlib.dhp.common.ResetHiveDbApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--dbName</arg><arg>${outputGraph}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="fork_merge_claims"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_merge_claims">
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<path start="merge_claims_publication"/>
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<path start="merge_claims_dataset"/>
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<path start="merge_claims_software"/>
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<path start="merge_claims_otherresearchproduct"/>
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<path start="merge_claims_datasource"/>
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<path start="merge_claims_organization"/>
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<path start="merge_claims_project"/>
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<path start="merge_claims_relation"/>
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</fork>
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<action name="merge_claims_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>MergeClaims_publication</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
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<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--graphFormat</arg><arg>${graphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_merge"/>
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<error to="Kill"/>
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</action>
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<action name="merge_claims_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>MergeClaims_dataset</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=7680
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_relation">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_relation</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=3840
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Relation</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_software">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_software</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=1920
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_otherresearchproduct">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_otherresearchproduct</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=1920
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_datasource">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_datasource</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=200
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_organization">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_organization</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=200
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<action name="merge_claims_project">
|
|
<spark xmlns="uri:oozie:spark-action:0.2">
|
|
<master>yarn</master>
|
|
<mode>cluster</mode>
|
|
<name>MergeClaims_project</name>
|
|
<class>eu.dnetlib.dhp.oa.graph.raw.MergeClaimsApplication</class>
|
|
<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
|
|
<spark-opts>
|
|
--executor-memory ${sparkExecutorMemory}
|
|
--executor-cores ${sparkExecutorCores}
|
|
--driver-memory=${sparkDriverMemory}
|
|
--conf spark.extraListeners=${spark2ExtraListeners}
|
|
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
|
|
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
|
|
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
|
|
--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
|
|
--conf spark.sql.shuffle.partitions=200
|
|
</spark-opts>
|
|
<arg>--rawGraphPath</arg><arg>${workingDir}/graph_raw</arg>
|
|
<arg>--claimsGraphPath</arg><arg>${workingDir}/graph_claims</arg>
|
|
<arg>--outputGraph</arg><arg>${outputGraph}</arg>
|
|
<arg>--graphFormat</arg><arg>${graphFormat}</arg>
|
|
<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
|
|
<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
|
|
</spark>
|
|
<ok to="wait_merge"/>
|
|
<error to="Kill"/>
|
|
</action>
|
|
|
|
<join name="wait_merge" to="End"/>
|
|
|
|
<end name="End"/>
|
|
</workflow-app> |