forked from D-Net/dnet-hadoop
383 lines
18 KiB
XML
383 lines
18 KiB
XML
<workflow-app name="clean graph" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>inputGraph</name>
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<description>the input graph name (or path)</description>
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</property>
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<property>
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<name>outputGraph</name>
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<description>the output graph name (or path)</description>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>inputGraphFormat</name>
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<value>HIVE</value>
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<description>the input graph data format</description>
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</property>
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<property>
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<name>outputGraphFormat</name>
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<value>HIVE</value>
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<description>the output graph data format</description>
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</property>
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<property>
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<name>hiveMetastoreUris</name>
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<description>hive server metastore URIs</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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<property>
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<name>sparkSqlWarehouseDir</name>
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<value>spark 2.* db directory location</value>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="should_drop_db"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<decision name="should_drop_db">
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<switch>
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<case to="fork_clean_graph">${wf:conf('outputGraphFormat') eq 'JSON'}</case>
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<case to="reset_DB">${wf:conf('outputGraphFormat') eq 'HIVE'}</case>
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<default to="reset_DB"/>
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</switch>
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</decision>
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<action name="reset_DB">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>reset_DB</name>
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<class>eu.dnetlib.dhp.common.ResetHiveDbApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--dbName</arg><arg>${outputGraph}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="fork_clean_graph"/>
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<error to="Kill"/>
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</action>
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<fork name="fork_clean_graph">
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<path start="clean_publication"/>
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<path start="clean_dataset"/>
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<path start="clean_otherresearchproduct"/>
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<path start="clean_software"/>
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<path start="clean_datasource"/>
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<path start="clean_organization"/>
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<path start="clean_project"/>
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<path start="clean_relation"/>
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</fork>
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<action name="clean_publication">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean publications</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_dataset">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean datasets</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_otherresearchproduct">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean otherresearchproducts</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_software">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean softwares</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_datasource">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean datasources</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_organization">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean organizations</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_project">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean projects</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<action name="clean_relation">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Clean relations</name>
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<class>eu.dnetlib.dhp.oa.graph.clean.CleanGraphSparkJob</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--inputGraph</arg><arg>${inputGraph}</arg>
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<arg>--outputGraph</arg><arg>${outputGraph}</arg>
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<arg>--inputGraphFormat</arg><arg>${inputGraphFormat}</arg>
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<arg>--outputGraphFormat</arg><arg>${outputGraphFormat}</arg>
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<arg>--graphTableClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Relation</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--hiveMetastoreUris</arg><arg>${hiveMetastoreUris}</arg>
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</spark>
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<ok to="wait_clean"/>
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<error to="Kill"/>
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</action>
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<join name="wait_clean" to="End"/>
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<end name="End"/>
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</workflow-app> |