forked from D-Net/dnet-hadoop
178 lines
4.9 KiB
Java
178 lines
4.9 KiB
Java
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package eu.dnetlib.dhp.oa.dedup;
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import static java.nio.file.Files.createTempDirectory;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.mockito.Mockito.lenient;
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import java.io.File;
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import java.io.IOException;
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import java.io.Serializable;
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import java.net.URISyntaxException;
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import java.nio.file.Paths;
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import org.apache.commons.io.FileUtils;
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import org.apache.commons.io.IOUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.*;
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import org.junit.jupiter.api.extension.ExtendWith;
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import org.mockito.Mock;
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import org.mockito.Mockito;
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import org.mockito.junit.jupiter.MockitoExtension;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
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import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
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@ExtendWith(MockitoExtension.class)
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public class SparkStatsTest implements Serializable {
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@Mock(serializable = true)
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ISLookUpService isLookUpService;
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private static SparkSession spark;
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private static JavaSparkContext jsc;
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private static String testGraphBasePath;
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private static String testOutputBasePath;
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private static final String testActionSetId = "test-orchestrator";
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@BeforeAll
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public static void cleanUp() throws IOException, URISyntaxException {
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testGraphBasePath = Paths
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.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/entities").toURI())
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.toFile()
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.getAbsolutePath();
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testOutputBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
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.toAbsolutePath()
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.toString();
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FileUtils.deleteDirectory(new File(testOutputBasePath));
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final SparkConf conf = new SparkConf();
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conf.set("spark.sql.shuffle.partitions", "200");
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spark = SparkSession
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.builder()
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.appName(SparkDedupTest.class.getSimpleName())
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.master("local[*]")
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.config(conf)
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.getOrCreate();
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jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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}
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@BeforeEach
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public void setUp() throws IOException, ISLookUpException {
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId)))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator.xml")));
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("organization")))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication")))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json")));
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("software")))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json")));
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("dataset")))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json")));
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lenient()
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.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("otherresearchproduct")))
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.thenReturn(
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IOUtils
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.toString(
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SparkDedupTest.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json")));
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}
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@Test
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public void createBlockStatsTest() throws Exception {
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ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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SparkCreateSimRels.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/oa/dedup/createBlockStats_parameters.json")));
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parser
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.parseArgument(
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new String[] {
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"-i", testGraphBasePath,
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"-asi", testActionSetId,
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"-la", "lookupurl",
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"-w", testOutputBasePath
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});
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new SparkBlockStats(parser, spark).run(isLookUpService);
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long orgs_blocks = spark
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.read()
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.textFile(testOutputBasePath + "/" + testActionSetId + "/organization_blockstats")
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.count();
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long pubs_blocks = spark
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.read()
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.textFile(testOutputBasePath + "/" + testActionSetId + "/publication_blockstats")
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.count();
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long sw_blocks = spark
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.read()
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.textFile(testOutputBasePath + "/" + testActionSetId + "/software_blockstats")
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.count();
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long ds_blocks = spark
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.read()
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.textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_blockstats")
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.count();
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long orp_blocks = spark
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.read()
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.textFile(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_blockstats")
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.count();
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assertEquals(549, orgs_blocks);
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assertEquals(868, pubs_blocks);
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assertEquals(473, sw_blocks);
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assertEquals(523, ds_blocks);
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assertEquals(756, orp_blocks);
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}
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}
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