forked from D-Net/dnet-hadoop
279 lines
12 KiB
XML
279 lines
12 KiB
XML
<workflow-app name="Openorgs Dedup" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>graphBasePath</name>
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<description>the raw graph base path</description>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>actionSetId</name>
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<description>id of the actionSet</description>
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</property>
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<property>
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<name>apiUrl</name>
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<description>OpenOrgs API to finalise the suggestions import procedure</description>
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</property>
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<property>
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<name>dbUrl</name>
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<description>jdbc URL of the OpenOrgs database</description>
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</property>
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<property>
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<name>dbUser</name>
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<description>username to access the OpenOrgs database</description>
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</property>
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<property>
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<name>dbPwd</name>
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<description>password to access the OpenOrgs database</description>
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</property>
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<property>
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<name>dbConnections</name>
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<value>10</value>
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<description>number of connections to the postgres db</description>
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</property>
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<property>
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<name>workingPath</name>
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<description>path for the working directory</description>
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</property>
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<property>
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<name>cutConnectedComponent</name>
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<description>max number of elements in a connected component</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="resume_from"/>
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<decision name="resume_from">
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<switch>
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<case to="CreateSimRels">${wf:conf('resumeFrom') eq 'CreateSimRels'}</case>
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<case to="CreateMergeRels">${wf:conf('resumeFrom') eq 'CreateMergeRels'}</case>
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<case to="PrepareOrgRels">${wf:conf('resumeFrom') eq 'PrepareOrgRels'}</case>
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<case to="update_openorgs">${wf:conf('resumeFrom') eq 'update_openorgs'}</case>
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<default to="resetOrgSimRels"/>
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</switch>
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</decision>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="resetOrgSimRels">
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<fs>
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<delete path="${workingPath}/${actionSetId}/organization_simrel"/>
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<delete path="${workingPath}/${actionSetId}/organization_mergerel"/>
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</fs>
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<ok to="CreateSimRels"/>
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<error to="Kill"/>
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</action>
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<action name="CreateSimRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Similarity Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--numPartitions</arg><arg>1000</arg>
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</spark>
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<ok to="CopyOpenorgsSimRels"/>
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<error to="Kill"/>
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</action>
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<!-- copy simrels relations coming from openorgs -->
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<action name="CopyOpenorgsSimRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Copy OpenOrgs Sim Rels</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCopyOpenorgsSimRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--numPartitions</arg><arg>1000</arg>
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</spark>
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<ok to="CreateMergeRels"/>
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<error to="Kill"/>
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</action>
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<action name="CreateMergeRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Merge Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--cutConnectedComponent</arg><arg>${cutConnectedComponent}</arg>
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</spark>
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<ok to="PrepareOrgRels"/>
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<error to="Kill"/>
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</action>
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<action name="PrepareOrgRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Prepare Organization Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkPrepareOrgRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--dbUrl</arg><arg>${dbUrl}</arg>
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<arg>--dbTable</arg><arg>${dbTable}</arg>
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<arg>--dbUser</arg><arg>${dbUser}</arg>
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<arg>--dbPwd</arg><arg>${dbPwd}</arg>
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<arg>--numConnections</arg><arg>${dbConnections}</arg>
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</spark>
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<ok to="PrepareNewOrgs"/>
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<error to="Kill"/>
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</action>
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<action name="PrepareNewOrgs">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Prepare New Organizations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkPrepareNewOrgs</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--dbUrl</arg><arg>${dbUrl}</arg>
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<arg>--dbTable</arg><arg>${dbTable}</arg>
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<arg>--dbUser</arg><arg>${dbUser}</arg>
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<arg>--dbPwd</arg><arg>${dbPwd}</arg>
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<arg>--numConnections</arg><arg>${dbConnections}</arg>
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</spark>
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<ok to="update_openorgs"/>
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<error to="Kill"/>
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</action>
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<action name="update_openorgs">
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<java>
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<main-class>eu.dnetlib.dhp.oa.dedup.UpdateOpenorgsJob</main-class>
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<arg>--apiUrl</arg><arg>${apiUrl}</arg>
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<arg>--delay</arg><arg>5</arg>
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</java>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |