forked from D-Net/dnet-hadoop
328 lines
14 KiB
XML
328 lines
14 KiB
XML
<workflow-app name="Duplicate Scan" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>graphBasePath</name>
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<description>the raw graph base path</description>
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</property>
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<property>
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<name>isLookUpUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>actionSetId</name>
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<description>id of the actionSet</description>
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</property>
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<property>
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<name>actionSetIdOpenorgs</name>
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<description>id of the actionSet for OpenOrgs dedup</description>
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</property>
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<property>
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<name>workingPath</name>
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<description>path for the working directory</description>
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</property>
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<property>
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<name>whiteListPath</name>
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<description>path for the whitelist of similarity relations</description>
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</property>
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<property>
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<name>dedupGraphPath</name>
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<description>path for the output graph</description>
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</property>
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<property>
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<name>cutConnectedComponent</name>
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<description>max number of elements in a connected component</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="resetWorkingPath"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="resetWorkingPath">
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<fs>
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<delete path="${workingPath}"/>
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<delete path="${dedupGraphPath}"/>
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</fs>
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<ok to="CreateSimRel"/>
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<error to="Kill"/>
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</action>
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<action name="testOpenorgs">
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<fs>
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<delete path="${workingPath}/${actionSetIdOpenorgs}"/>
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<delete path="${dedupGraphPath}"/>
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</fs>
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<ok to="CopyOpenorgsMergeRels"/>
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<error to="Kill"/>
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</action>
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<action name="CreateSimRel">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Similarity Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateSimRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--numPartitions</arg><arg>8000</arg>
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</spark>
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<ok to="WhitelistSimRels"/>
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<error to="Kill"/>
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</action>
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<action name="WhitelistSimRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Add Whitelist Similarity Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkWhitelistSimRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--whiteListPath</arg><arg>${whiteListPath}</arg>
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<arg>--numPartitions</arg><arg>8000</arg>
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</spark>
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<ok to="CreateMergeRel"/>
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<error to="Kill"/>
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</action>
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<action name="CreateMergeRel">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Merge Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateMergeRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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<arg>--cutConnectedComponent</arg><arg>${cutConnectedComponent}</arg>
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</spark>
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<ok to="CreateDedupRecord"/>
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<error to="Kill"/>
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</action>
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<action name="CreateDedupRecord">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Dedup Record</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateDedupRecord</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetId}</arg>
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</spark>
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<ok to="CopyOpenorgsMergeRels"/>
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<error to="Kill"/>
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</action>
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<!-- copy organization merge relations in the working dir (in the organization_mergerel dir)-->
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<action name="CopyOpenorgsMergeRels">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Copy Openorgs Merge Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCopyOpenorgsMergeRels</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetIdOpenorgs}</arg>
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<arg>--numPartitions</arg><arg>8000</arg>
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</spark>
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<ok to="CreateOrgsDedupRecord"/>
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<error to="Kill"/>
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</action>
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<action name="CreateOrgsDedupRecord">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Create Organizations Dedup Records</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCreateOrgsDedupRecord</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
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<arg>--actionSetId</arg><arg>${actionSetIdOpenorgs}</arg>
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</spark>
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<ok to="UpdateEntity"/>
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<error to="Kill"/>
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</action>
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<action name="UpdateEntity">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Update Entity</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkUpdateEntity</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--dedupGraphPath</arg><arg>${dedupGraphPath}</arg>
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</spark>
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<ok to="copyRelations"/>
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<error to="Kill"/>
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</action>
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<!-- copy all relations without openorgs relations to the dedupgraph -->
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<action name="copyRelations">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>Copy Non-Openorgs Relations</name>
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<class>eu.dnetlib.dhp.oa.dedup.SparkCopyRelationsNoOpenorgs</class>
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<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory=${sparkExecutorMemory}
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--executor-cores=${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=3840
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</spark-opts>
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<arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
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<arg>--workingPath</arg><arg>${workingPath}</arg>
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<arg>--dedupGraphPath</arg><arg>${dedupGraphPath}</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |