package eu.dnetlib.dhp.actionmanager.createunresolvedentities; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.List; import java.util.stream.Collectors; import org.apache.commons.io.FileUtils; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.LocalFileSystem; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.*; public class ProduceTest { private static final Logger log = LoggerFactory.getLogger(ProduceTest.class); private static Path workingDir; private static SparkSession spark; private static LocalFileSystem fs; private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static final String ID_PREFIX = "50|doi_________"; @BeforeAll public static void beforeAll() throws IOException { workingDir = Files.createTempDirectory(ProduceTest.class.getSimpleName()); fs = FileSystem.getLocal(new Configuration()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(ProduceTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(ProduceTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test void produceTest() throws Exception { final String bipPath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/createunresolvedentities/bip/bip.json") .getPath(); PrepareBipFinder .main( new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--sourcePath", bipPath, "--outputPath", workingDir.toString() + "/work" }); final String fosPath = getClass() .getResource("/eu/dnetlib/dhp/actionmanager/createunresolvedentities/fos/fos.json") .getPath(); PrepareFOSSparkJob .main( new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--sourcePath", fosPath, "-outputPath", workingDir.toString() + "/work" }); SparkSaveUnresolved.main(new String[] { "--isSparkSessionManaged", Boolean.FALSE.toString(), "--sourcePath", workingDir.toString() + "/work", "-outputPath", workingDir.toString() + "/unresolved" }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/unresolved") .map(item -> OBJECT_MAPPER.readValue(item, Result.class)); Assertions.assertEquals(135, tmp.count()); Assertions.assertEquals(1, tmp.filter(row -> row.getId().equals("unresolved::10.3390/s18072310::doi")).count()); Assertions .assertEquals( 3, tmp .filter(row -> row.getId().equals("unresolved::10.3390/s18072310::doi")) .collect() .get(0) .getSubject() .size()); Assertions .assertEquals( 3, tmp .filter(row -> row.getId().equals("unresolved::10.3390/s18072310::doi")) .collect() .get(0) .getMeasures() .size()); List sbjs = tmp .filter(row -> row.getId().equals("unresolved::10.3390/s18072310::doi")) .flatMap(row -> row.getSubject().iterator()) .collect(); sbjs.forEach(sbj -> Assertions.assertEquals("FOS", sbj.getQualifier().getClassid())); sbjs .forEach( sbj -> Assertions .assertEquals( "Fields of Science and Technology classification", sbj.getQualifier().getClassname())); sbjs .forEach( sbj -> Assertions .assertEquals(ModelConstants.DNET_SUBJECT_TYPOLOGIES, sbj.getQualifier().getSchemeid())); sbjs .forEach( sbj -> Assertions .assertEquals(ModelConstants.DNET_SUBJECT_TYPOLOGIES, sbj.getQualifier().getSchemename())); sbjs.forEach(sbj -> Assertions.assertEquals(false, sbj.getDataInfo().getDeletedbyinference())); sbjs.forEach(sbj -> Assertions.assertEquals(true, sbj.getDataInfo().getInferred())); sbjs.forEach(sbj -> Assertions.assertEquals(false, sbj.getDataInfo().getInvisible())); sbjs.forEach(sbj -> Assertions.assertEquals("", sbj.getDataInfo().getTrust())); sbjs.forEach(sbj -> Assertions.assertEquals("update", sbj.getDataInfo().getInferenceprovenance())); sbjs .forEach( sbj -> Assertions.assertEquals("subject:fos", sbj.getDataInfo().getProvenanceaction().getClassid())); sbjs .forEach( sbj -> Assertions .assertEquals("Inferred by OpenAIRE", sbj.getDataInfo().getProvenanceaction().getClassname())); sbjs .forEach( sbj -> Assertions .assertEquals( ModelConstants.DNET_PROVENANCE_ACTIONS, sbj.getDataInfo().getProvenanceaction().getSchemeid())); sbjs .forEach( sbj -> Assertions .assertEquals( ModelConstants.DNET_PROVENANCE_ACTIONS, sbj.getDataInfo().getProvenanceaction().getSchemename())); sbjs.stream().anyMatch(sbj -> sbj.getValue().equals("engineering and technology")); sbjs.stream().anyMatch(sbj -> sbj.getValue().equals("nano-technology")); sbjs.stream().anyMatch(sbj -> sbj.getValue().equals("nanoscience & nanotechnology")); List measures = tmp .filter(row -> row.getId().equals("unresolved::10.3390/s18072310::doi")) .flatMap(row -> row.getMeasures().iterator()) .collect(); Assertions .assertEquals( "7.5597134689e-09", measures .stream() .filter(mes -> mes.getId().equals("influence")) .collect(Collectors.toList()) .get(0) .getUnit() .get(0) .getValue()); Assertions .assertEquals( "4.903880192", measures .stream() .filter(mes -> mes.getId().equals("popularity_alt")) .collect(Collectors.toList()) .get(0) .getUnit() .get(0) .getValue()); Assertions .assertEquals( "1.17977512835e-08", measures .stream() .filter(mes -> mes.getId().equals("popularity")) .collect(Collectors.toList()) .get(0) .getUnit() .get(0) .getValue()); Assertions .assertEquals( 49, tmp .filter(row -> !row.getId().equals("unresolved::10.3390/s18072310::doi")) .filter(row -> row.getSubject() != null) .count()); Assertions .assertEquals( 85, tmp .filter(row -> !row.getId().equals("unresolved::10.3390/s18072310::doi")) .filter(r -> r.getMeasures() != null) .count()); } }