package eu.dnetlib.dhp.oa.graph.dump; import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; import java.util.HashMap; import java.util.logging.Filter; import java.util.stream.Collectors; import eu.dnetlib.dhp.schema.dump.oaf.community.Funder; import eu.dnetlib.dhp.schema.dump.oaf.community.Project; import org.apache.commons.io.FileUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.JavaRDD; import org.apache.spark.api.java.JavaSparkContext; import org.apache.spark.api.java.function.FilterFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.Row; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.AfterAll; import org.junit.jupiter.api.Assertions; import org.junit.jupiter.api.BeforeAll; import org.junit.jupiter.api.Test; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo; import eu.dnetlib.dhp.schema.dump.oaf.Result; import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult; public class UpdateProjectInfoTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); private static SparkSession spark; private static Path workingDir; private static final Logger log = LoggerFactory.getLogger(eu.dnetlib.dhp.oa.graph.dump.UpdateProjectInfoTest.class); private static final HashMap map = new HashMap<>(); @BeforeAll public static void beforeAll() throws IOException { workingDir = Files .createTempDirectory(eu.dnetlib.dhp.oa.graph.dump.UpdateProjectInfoTest.class.getSimpleName()); log.info("using work dir {}", workingDir); SparkConf conf = new SparkConf(); conf.setAppName(eu.dnetlib.dhp.oa.graph.dump.UpdateProjectInfoTest.class.getSimpleName()); conf.setMaster("local[*]"); conf.set("spark.driver.host", "localhost"); conf.set("hive.metastore.local", "true"); conf.set("spark.ui.enabled", "false"); conf.set("spark.sql.warehouse.dir", workingDir.toString()); conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); spark = SparkSession .builder() .appName(eu.dnetlib.dhp.oa.graph.dump.UpdateProjectInfoTest.class.getSimpleName()) .config(conf) .getOrCreate(); } @AfterAll public static void afterAll() throws IOException { FileUtils.deleteDirectory(workingDir.toFile()); spark.stop(); } @Test public void test1() throws Exception { final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo") .getPath(); SparkUpdateProjectInfo.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-preparedInfoPath", sourcePath + "/preparedInfo", "-outputPath", workingDir.toString() + "/result", "-sourcePath", sourcePath + "/software.json" }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/result") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class)); verificationDataset.show(false); Assertions.assertEquals(6, verificationDataset.count()); verificationDataset.createOrReplaceTempView("dataset"); String query = "select id, MyT.code code, MyT.title title, MyT.funder.name funderName, MyT.funder.shortName funderShortName, " + "MyT.funder.jurisdiction funderJurisdiction, MyT.funder.fundingStream fundingStream " + "from dataset " + "lateral view explode(projects) p as MyT "; org.apache.spark.sql.Dataset resultExplodedProvenance = spark.sql(query); Assertions.assertEquals(3, resultExplodedProvenance.count()); resultExplodedProvenance.show(false); Assertions .assertEquals( 2, resultExplodedProvenance.filter("id = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("id = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' and code = '123455'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("id = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' and code = '119027'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("id = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' and code = '123455'") .count()); resultExplodedProvenance.show(false); } @Test public void testValidatedRelation() throws Exception{ final String sourcePath = getClass() .getResource("/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo") .getPath(); SparkUpdateProjectInfo.main(new String[] { "-isSparkSessionManaged", Boolean.FALSE.toString(), "-preparedInfoPath", sourcePath + "/preparedInfoValidated", "-outputPath", workingDir.toString() + "/result", "-sourcePath", sourcePath + "/publication_extendedmodel" }); final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); JavaRDD tmp = sc .textFile(workingDir.toString() + "/result") .map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class)); org.apache.spark.sql.Dataset verificationDataset = spark .createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class)); verificationDataset.show(false); Assertions.assertEquals(2, verificationDataset.count()); verificationDataset.createOrReplaceTempView("dataset"); String query = "select id, MyT.code code, MyT.title title, MyT.funder.name funderName, MyT.funder.shortName funderShortName, " + "MyT.funder.jurisdiction funderJurisdiction, MyT.funder.fundingStream fundingStream, MyT.validated " + "from dataset " + "lateral view explode(projects) p as MyT "; org.apache.spark.sql.Dataset resultExplodedProvenance = spark.sql(query); Assertions.assertEquals(2, resultExplodedProvenance.count()); resultExplodedProvenance.show(false); Assertions .assertEquals( 2, resultExplodedProvenance.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2'").count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '123455'") .count()); Assertions .assertEquals( 1, resultExplodedProvenance .filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '119027'") .count()); Project project = verificationDataset .map((MapFunction) cr -> cr.getProjects().stream().filter(p -> p.getValidated() != null).collect(Collectors.toList()).get(0) , Encoders.bean(Project.class)).first(); Assertions.assertTrue(project.getFunder().getName().equals("Academy of Finland")); Assertions.assertTrue(project.getFunder().getShortName().equals("AKA")); Assertions.assertTrue(project.getFunder().getJurisdiction().equals("FI")); Assertions.assertTrue(project.getFunder().getFundingStream() == null); Assertions.assertTrue(project.getValidated().getValidationDate().equals("2021-08-06")); project = verificationDataset .map((MapFunction) cr -> cr.getProjects().stream().filter(p -> p.getValidated() == null).collect(Collectors.toList()).get(0) , Encoders.bean(Project.class)).first(); Assertions.assertTrue(project.getFunder().getName().equals("European Commission")); Assertions.assertTrue(project.getFunder().getShortName().equals("EC")); Assertions.assertTrue(project.getFunder().getJurisdiction().equals("EU")); Assertions.assertTrue(project.getFunder().getFundingStream().equals("H2020")); } }