package eu.dnetlib.dhp.resulttocommunityfromorganization; import static eu.dnetlib.dhp.PropagationConstant.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession; import java.util.ArrayList; import java.util.Arrays; import java.util.List; import java.util.Optional; import java.util.stream.Collectors; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.common.ModelConstants; import eu.dnetlib.dhp.schema.oaf.Context; import eu.dnetlib.dhp.schema.oaf.Result; import scala.Tuple2; public class SparkResultToCommunityFromOrganizationJob { private static final Logger log = LoggerFactory.getLogger(SparkResultToCommunityFromOrganizationJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkResultToCommunityFromOrganizationJob.class .getResourceAsStream( "/eu/dnetlib/dhp/resulttocommunityfromorganization/input_communitytoresult_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); final String possibleupdatespath = parser.get("preparedInfoPath"); log.info("preparedInfoPath: {}", possibleupdatespath); final String resultClassName = parser.get("resultTableName"); log.info("resultTableName: {}", resultClassName); final Boolean saveGraph = Optional .ofNullable(parser.get("saveGraph")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("saveGraph: {}", saveGraph); @SuppressWarnings("unchecked") Class resultClazz = (Class) Class.forName(resultClassName); SparkConf conf = new SparkConf(); conf.set("hive.metastore.uris", parser.get("hive_metastore_uris")); runWithSparkHiveSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, outputPath); if (saveGraph) { execPropagation(spark, inputPath, outputPath, resultClazz, possibleupdatespath); } }); } private static void execPropagation( SparkSession spark, String inputPath, String outputPath, Class resultClazz, String possibleUpdatesPath) { Dataset possibleUpdates = readPath(spark, possibleUpdatesPath, ResultCommunityList.class); Dataset result = readPath(spark, inputPath, resultClazz); result .joinWith( possibleUpdates, result.col("id").equalTo(possibleUpdates.col("resultId")), "left_outer") .map(resultCommunityFn(), Encoders.bean(resultClazz)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } private static MapFunction, R> resultCommunityFn() { return value -> { R ret = value._1(); Optional rcl = Optional.ofNullable(value._2()); if (rcl.isPresent()) { ArrayList communitySet = rcl.get().getCommunityList(); List contextList = ret .getContext() .stream() .map(Context::getId) .collect(Collectors.toList()); @SuppressWarnings("unchecked") R res = (R) ret.getClass().newInstance(); res.setId(ret.getId()); List propagatedContexts = new ArrayList<>(); for (String cId : communitySet) { if (!contextList.contains(cId)) { Context newContext = new Context(); newContext.setId(cId); newContext .setDataInfo( Arrays .asList( getDataInfo( PROPAGATION_DATA_INFO_TYPE, PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_ID, PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME, ModelConstants.DNET_PROVENANCE_ACTIONS))); propagatedContexts.add(newContext); } } res.setContext(propagatedContexts); ret.mergeFrom(res); } return ret; }; } }