package eu.dnetlib.dhp.actionmanager.createunresolvedentities; import static eu.dnetlib.dhp.actionmanager.createunresolvedentities.Constants.*; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.Serializable; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.oaf.Result; public class SparkSaveUnresolved implements Serializable { private static final Logger log = LoggerFactory.getLogger(PrepareFOSSparkJob.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( PrepareFOSSparkJob.class .getResourceAsStream( "/eu/dnetlib/dhp/actionmanager/createunresolvedentities/produce_unresolved_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = isSparkSessionManaged(parser); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); String sourcePath = parser.get("sourcePath"); log.info("sourcePath: {}", sourcePath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { saveUnresolved( spark, sourcePath, outputPath); }); } private static void saveUnresolved(SparkSession spark, String sourcePath, String outputPath) { spark .read() .textFile(sourcePath + "/*") .map( (MapFunction) l -> OBJECT_MAPPER.readValue(l, Result.class), Encoders.bean(Result.class)) .groupByKey((MapFunction) r -> r.getId(), Encoders.STRING()) .mapGroups((MapGroupsFunction) (k, it) -> { Result ret = it.next(); it.forEachRemaining(r -> ret.mergeFrom(r)); return ret; }, Encoders.bean(Result.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } }