sourcePath
the Working Path
workingPath
the Working Path
mdStoreOutputId
the identifier of the cleaned MDStore
mdStoreManagerURI
the path of the cleaned mdstore
resumeFrom
CreateEBIDataSet
node to start
${wf:conf('resumeFrom') eq 'DownloadEBILinks'}
${wf:conf('resumeFrom') eq 'CreateEBIDataSet'}
Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]
yarn-cluster
cluster
Incremental Download EBI Links
eu.dnetlib.dhp.sx.bio.ebi.SparkDownloadEBILinks
dhp-aggregation-${projectVersion}.jar
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.shuffle.partitions=2000
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--sourcePath${sourcePath}
--workingPath${workingPath}
--masteryarn
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionNEW_VERSION
--mdStoreID${mdStoreOutputId}
--mdStoreManagerURI${mdStoreManagerURI}
yarn-cluster
cluster
Create OAF DataSet
eu.dnetlib.dhp.sx.bio.ebi.SparkEBILinksToOaf
dhp-aggregation-${projectVersion}.jar
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.sql.shuffle.partitions=2000
${sparkExtraOPT}
--sourcePath${sourcePath}/ebi_links_dataset
--mdstoreOutputVersion${wf:actionData('StartTransaction')['mdStoreVersion']}
--masteryarn
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionCOMMIT
--namenode${nameNode}
--mdStoreVersion${wf:actionData('StartTransaction')['mdStoreVersion']}
--mdStoreManagerURI${mdStoreManagerURI}
oozie.launcher.mapreduce.user.classpath.first
true
eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode
--actionROLLBACK
--mdStoreVersion${wf:actionData('StartTransaction')['mdStoreVersion']}
--mdStoreManagerURI${mdStoreManagerURI}