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225 Commits

Author SHA1 Message Date
Claudio Atzori 27ab8a704d adjusted poms to align with the external dhp-schema module 2021-04-27 10:12:27 +02:00
Claudio Atzori ef4bfd82e2 code formatting 2021-04-27 10:09:31 +02:00
Claudio Atzori faa8f6f4e2 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-04-27 09:57:03 +02:00
miconis 6d5c14e030 assertions updated in entity merger test 2021-04-27 09:47:49 +02:00
Claudio Atzori c2bb03c8b5 depending on external dhp-schemas module 2021-04-23 17:57:35 +02:00
miconis 3c12eeadce bug fix in propagation of relations 2021-04-22 11:44:33 +02:00
Claudio Atzori 8f309b72ff [dedup] using node names consistently across the workflow 2021-04-21 17:54:51 +02:00
Claudio Atzori 815b9f4d56 [openorgs dedup] fixed workflow parameter declarations. Introduced support for resuming the execution from intermediate steps 2021-04-20 17:24:45 +02:00
Claudio Atzori 45057440c1 code formatting 2021-04-16 17:28:25 +02:00
miconis 7ad573d023 bug fix: changed join in propagaterelations without applying filter on the id 2021-04-16 16:40:42 +02:00
miconis f64e57c112 refactoring of the id generation, sparkcreatemergerels collects entities to create root id after a join 2021-04-15 10:59:24 +02:00
miconis 3525a8f504 id generation of representative record moved to the SparkCreateMergeRel job 2021-04-14 18:06:07 +02:00
miconis 1542196a33 bug fix: starting node of duplicate scan wf changed 2021-04-13 10:15:43 +02:00
miconis 369ed1cd8a bug fix: lookupurl parameter added to dedup record job 2021-04-13 09:08:05 +02:00
Claudio Atzori 511c0521e5 [dedup] avoiding NPEs handling OpenOrg relations 2021-04-12 17:45:11 +02:00
miconis d442e25cbc bug fix: ids in self mergerels are not marked deletedbyinference=true 2021-04-12 15:56:22 +02:00
miconis 0857100fb8 implementation of the tests for the openorgs integration in the openaire provision 2021-04-07 18:42:16 +02:00
miconis bf685d849f addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model 2021-04-07 14:27:43 +02:00
miconis c39c82dfe9 modification of the jobs for the integration of openorgs in the provision, dedup records are no more created by merging but simply taking results of openorgs portal 2021-04-06 14:31:00 +02:00
Claudio Atzori 70e49ed53c [OpenOrgsWf] trivial refactoring 2021-04-01 10:30:51 +02:00
Claudio Atzori 7941d7be29 WIP: using common definitions from ModelConstants 2021-03-31 18:33:57 +02:00
Claudio Atzori 72ce741ea6 WIP: using common definitions from ModelConstants 2021-03-31 17:07:13 +02:00
Claudio Atzori 9237d55d7f [OpenOrgsWf] cleanup 2021-03-29 17:40:34 +02:00
miconis f446580e9f code refactoring (useless classes and wf removed), implementation of the test for the openorgs dedup 2021-03-29 16:10:46 +02:00
miconis 2355cc4e9b minor changes and bug fix 2021-03-29 10:07:12 +02:00
miconis 28c1cdd132 merged stable_ids into openorgswf 2021-03-25 10:44:49 +01:00
miconis 5dfb66b0fa minor changes 2021-03-25 10:29:34 +01:00
miconis 348b0ef921 bug fix, implementation of the workflow for the creation of raw_organizations (openorgs dedup), addition of the pid lists to the openorgs postgres db 2021-03-24 15:51:27 +01:00
miconis 98854b0124 minor changes 2021-03-19 16:57:40 +01:00
Claudio Atzori 972d5a3d98 [dedup] Datacite should be authoritative for datasets 2021-03-19 09:04:20 +01:00
miconis 1a85020572 bug fix in graph-mapper, changes in the implementation of the openorgs wf to create relations and populate openorgs db 2021-02-26 10:19:28 +01:00
miconis 4b2124a18e implementation of the openorgs wfs, implementation of the raw_all wf to migrate openorgs db entities 2021-02-10 11:51:50 +01:00
miconis c7e2d5a59a minor changes 2021-01-25 12:40:45 +01:00
miconis 8fea29177c refactoring, minor changes and implementation of the wf for openorgs with integration of organization phases into the scan wf 2021-01-18 16:48:08 +01:00
miconis 1e1aab83e3 implementation of the raw wf for openorgs: still not complete, some functionalities are missing 2020-12-21 11:58:21 +01:00
Claudio Atzori d9532446eb imported more diffs from master branch; code formatting 2020-12-10 16:14:16 +01:00
Claudio Atzori 1eaad89a3c do not fail on uknown properties when grouping entities by ID 2020-12-10 15:56:11 +01:00
Claudio Atzori 758d27745d cleaning tab characters from text fields 2020-11-27 16:07:24 +01:00
Claudio Atzori 5151850a19 CROSSREF and DATACITE constants moved in common ModelConstants 2020-11-26 13:08:36 +01:00
Claudio Atzori d0d5525d40 minor changes 2020-11-26 11:04:17 +01:00
Claudio Atzori 13eae4b31e GroupEntitiesSparkJob must read all graph paths but relations 2020-11-26 11:04:01 +01:00
Claudio Atzori 76363a8512 SimpleDateFormat is not thread safe; improved error reporting in case of invalid dates 2020-11-26 11:03:12 +01:00
Claudio Atzori e208b03755 renamed workflow 2020-11-25 14:55:50 +01:00
Claudio Atzori dfd6205b95 Consistency graph workflow merges all the entities by ID 2020-11-25 14:55:32 +01:00
Claudio Atzori e5da4ee9b1 dedup workflow using the common PidComparator 2020-11-04 15:02:02 +01:00
Claudio Atzori 385214eeae code formatting 2020-10-30 15:47:05 +01:00
miconis c4a59d1b9a merge with the master to port the new packages 2020-10-20 16:07:30 +02:00
miconis 708d887e64 minor changes 2020-10-20 15:12:19 +02:00
miconis 0e54803177 bug fix in the id generator and implementation of jobs for organization dedup 2020-10-20 12:19:46 +02:00
miconis 6f8720982c bug fix in the idgenerator and test implementation 2020-10-09 09:30:23 +02:00
Sandro La Bruzzo 734934e2eb fixed error on empty intersection with publication and relation on export to OAF 2020-10-08 17:29:29 +02:00
Sandro La Bruzzo eec418cd26 moved AuthoreMerger into dhp-common 2020-10-08 10:33:55 +02:00
miconis 1804c5d809 refactoring: classes moved in the right package 2020-10-06 16:44:51 +02:00
miconis 7093355487 bug fix and minor changes 2020-10-06 16:21:34 +02:00
miconis 5a8bc329c5 bug fix in the result merge: it takes the correct bestaccessright basing on the license instead of the trust 2020-10-06 15:26:44 +02:00
miconis a2ac7e52fb implementation of the workflow for new organizations in openorgs 2020-10-06 13:58:09 +02:00
Claudio Atzori 23f64d9eb4 updated dedup tests following the dnet-pace-core library update 2020-10-02 14:30:53 +02:00
miconis e3f7798d1b minor changes in dedup tests, bug fix in the idgenerator and pace-core version update 2020-09-29 15:31:46 +02:00
miconis 4cf79f32eb implementation of the oozie wf to prepare the openorgs input: relations between organizations 2020-09-25 11:29:51 +02:00
miconis 259362ef47 implementation of the job to collect simrels from postgres db 2020-09-22 09:43:27 +02:00
Sandro La Bruzzo 168bfb496a adopted dedup to the new schema 2020-07-31 09:06:57 +02:00
miconis d47352cbc7 refactoring of the procedure for the id generation, minor changes and addition of a comparation on the original id and the origin datasource 2020-07-24 20:10:47 +02:00
miconis b260fee787 implementation of the dedup_id generation using pids to make the graph more stable 2020-07-22 17:29:48 +02:00
Claudio Atzori de72b1c859 cleanup 2020-07-20 09:59:11 +02:00
Claudio Atzori 805de4eca1 fix: filter the blocks with size = 1 2020-07-16 10:11:32 +02:00
Claudio Atzori b90389bac4 code formatting 2020-07-15 11:24:48 +02:00
Claudio Atzori 4e6f46e8fa filter blocks with one record only 2020-07-15 11:22:20 +02:00
Claudio Atzori 06def0c0cb SparkBlockStats allows to repartition the input rdd via the numPartitions workflow parameter 2020-07-13 20:09:06 +02:00
miconis b52c246aed merge done 2020-07-13 19:57:02 +02:00
miconis b8a45041fd minor changes 2020-07-13 19:53:18 +02:00
Claudio Atzori 66f9f6d323 adjusted parameters for the dedup stats workflow 2020-07-13 19:26:46 +02:00
miconis 03ecfa5ebd implementation of the test class for the new block stats spark action 2020-07-13 18:48:23 +02:00
miconis 10e08ccf45 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-13 18:22:45 +02:00
miconis 9258e4f095 implementation of a new workflow to compute statistics on the blocks 2020-07-13 18:22:34 +02:00
Claudio Atzori c6f6fb0f28 code formatting 2020-07-13 16:46:13 +02:00
Claudio Atzori 344a90c2e6 updated assertions in propagateRelationTest 2020-07-13 16:32:04 +02:00
Claudio Atzori 1143f426aa WIP SparkCreateMergeRels distinct relations 2020-07-13 16:13:36 +02:00
Claudio Atzori 8c67938ad0 configurable number of partitions used in the SparkCreateSimRels phase 2020-07-13 16:07:07 +02:00
Claudio Atzori c73168b18e Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting 2020-07-13 15:54:58 +02:00
Claudio Atzori c8284bab06 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:54:51 +02:00
Sandro La Bruzzo 1d133b7fe6 update test 2020-07-13 15:52:41 +02:00
Claudio Atzori 7dd91edf43 parsing of optional parameter 2020-07-13 15:40:41 +02:00
Claudio Atzori 4c101a9d66 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:31:38 +02:00
Claudio Atzori 8a612d861a WIP SparkCreateMergeRels distinct relations 2020-07-13 15:30:57 +02:00
Sandro La Bruzzo 9ef2385022 implemented test for cut of connected component 2020-07-13 15:28:17 +02:00
Sandro La Bruzzo d561b2dd21 implemented cut of connected component 2020-07-13 14:18:42 +02:00
Claudio Atzori e2093e42db Merge branch 'master' into deduptesting 2020-07-13 10:57:49 +02:00
Claudio Atzori 7a3fd9f54c dedup relation aggregator moved into dedicated class 2020-07-13 10:11:36 +02:00
Alessia Bardi 7e96105947 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-12 19:29:12 +02:00
Alessia Bardi b7a39731a6 assert, not print 2020-07-12 19:28:56 +02:00
Claudio Atzori 770adc26e9 WIP aggregator to make relationships unique 2020-07-10 19:35:10 +02:00
Claudio Atzori ecf119f37a Merge branch 'master' into deduptesting 2020-07-10 19:04:16 +02:00
Michele Artini e1ae964bc4 stats 2020-07-10 16:12:08 +02:00
Claudio Atzori 752d28f8eb make the relations produced by the dedup SparkPropagateRelation jon unique 2020-07-10 15:09:50 +02:00
Claudio Atzori 3c728aaa0c trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:39:51 +02:00
Claudio Atzori 18c555cd79 Merge branch 'master' into deduptesting 2020-07-08 22:32:01 +02:00
Claudio Atzori 4365cf41d7 trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:31:46 +02:00
Alessia Bardi 853e8d7987 test for software merge 2020-07-08 17:03:53 +02:00
Claudio Atzori c3d67f709a adjusted dedup configuration for result entities: using new wordssuffixprefix clustering function, removed ngrampairs, adjusted queueMaxSize (800) and slidingWindowSize (80) 2020-07-02 17:35:22 +02:00
Claudio Atzori 0f77cac4b5 fix: deduper must use queueMaxSize instead of groupMaxSize for the block definition 2020-07-02 12:43:51 +02:00