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239 Commits

Author SHA1 Message Date
Sandro La Bruzzo e8b3cb9147 Implemented method to download delta updates in EBI Links 2021-08-30 09:32:45 +02:00
Alessia Bardi 931f430129 Merge branch 'beta' into datasource_model_eosc_beta 2021-08-23 11:57:21 +02:00
Claudio Atzori f74adc4752 added DownloadCSV2 as alternative implementation of the same download procedure 2021-08-13 15:52:15 +02:00
Claudio Atzori 17cefe6a97 [HBM] removed stale replace option 2021-08-13 12:43:59 +02:00
Claudio Atzori 7ee2757fcd fixed DownloadCSV parameters spec; workflow patching the hostedby replaces the graph content (publication, datasource) rather than creating a copy 2021-08-13 12:41:01 +02:00
Claudio Atzori c3ad4ab701 minor fixes 2021-08-13 12:23:15 +02:00
Claudio Atzori 3359f73fcf cleanup & best practices 2021-08-13 12:00:42 +02:00
Miriam Baglioni 964a46ca21 GetCSV refactoring - modified due to movement of classes 2021-08-13 10:11:18 +02:00
Miriam Baglioni 2efa5abda5 refactoring 2021-08-09 12:28:36 +02:00
Miriam Baglioni e94ae0b1de Hosted By Map - extention of the workflow to consider also the application of the map to publications and datasources 2021-08-04 10:18:11 +02:00
Miriam Baglioni 67ba4c40e0 Hosted By Map - added parameter resources 2021-08-04 10:17:28 +02:00
Miriam Baglioni 1d6ac3715b merge branch with beta 2021-07-30 11:58:29 +02:00
Miriam Baglioni baad01cadc hostedbymap 2021-07-29 13:04:39 +02:00
Claudio Atzori 5d08ad86ae [raw_all] patching relation identifier phase to be run at the end, i.e. includes also claimed relations 2021-07-29 13:03:16 +02:00
Claudio Atzori e87e1805c4 [raw_all] added extra workflow step for patching the identifiers in the relations, given an id mapping dataset 2021-07-29 12:13:06 +02:00
Michele Artini c72c960ffb added eosc fields 2021-07-28 11:03:15 +02:00
Michele Artini 1fb572a33a added eosc fields 2021-07-28 10:52:24 +02:00
Sandro La Bruzzo 8fac10c91e fixed defintion wf of creation final infospace of scholexplorer 2021-07-25 11:15:37 +02:00
Sandro La Bruzzo d9e3b89937 implemented last part of workflows to generate scholixGraph 2021-07-23 16:38:32 +02:00
Sandro La Bruzzo ca74e8dd02 create a separate wf for resolving relation 2021-07-23 11:40:06 +02:00
Sandro La Bruzzo 31d2d6d41e Scholexplorer: introduction of dedup openaire 2021-07-21 18:09:32 +02:00
Sandro La Bruzzo 09fccf8000 added workflow to serialize scholix and summary in json 2021-07-09 11:01:42 +02:00
Sandro La Bruzzo cd17e19044 implemented branch workflow to import datacite and crossref in scholexplorer 2021-07-08 21:20:19 +02:00
Sandro La Bruzzo 8a034e46e1 updated baseline workflow 2021-07-08 11:11:41 +02:00
Sandro La Bruzzo 8535506c22 added scholix generation 2021-07-06 17:18:06 +02:00
Sandro La Bruzzo c6fa8598e1 massive code refactor: 
removed modules dhp-*-scholexplorer
 2021-07-01 22:13:45 +02:00
Sandro La Bruzzo 84b834c893 added test dataset test for pangaea 2021-06-30 17:31:09 +02:00
Sandro La Bruzzo 1a6b398968 implemented Creation of Raw Graph and Resolution 2021-06-30 17:27:55 +02:00
Sandro La Bruzzo 623a0c4edb code Refactor, renaming packages 2021-06-30 11:09:30 +02:00
Sandro La Bruzzo f36f92287d implemented mapping from Crossref Event Data to Oaf 2021-06-29 10:21:23 +02:00
Sandro La Bruzzo 511ec14c63 implemented mapping from EBI and Scholix Resolved to OAF 2021-06-28 22:04:22 +02:00
Sandro La Bruzzo ad50415167 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-24 17:20:50 +02:00
Sandro La Bruzzo 80e15cc455 implemented mapping from uniprot, pdb and ebi links 2021-06-24 17:20:00 +02:00
Claudio Atzori 50fc5a64a0 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-06-23 11:49:42 +02:00
Sandro La Bruzzo cc0f2b11fb Implemented mapping from pubmed baseline to OAF 2021-06-16 14:56:24 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Claudio Atzori dd19c4ac5a Merge pull request 'import_new_mdstores' (#112) from import_new_mdstores into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#112
 2021-06-14 09:23:55 +02:00
Sandro La Bruzzo e57294ac99 implemented changes on PUBMed dataflow 2021-06-03 10:52:09 +02:00
Michele Artini e950750262 add nodes to import hdfs mdstores 2021-06-01 10:48:50 +02:00
Michele Artini e9f2b6037c patch of mdstore records 2021-05-31 11:36:26 +02:00
Michele Artini ad56a44fda save as gzipped sequence file 2021-05-28 14:45:39 +02:00
Michele Artini 4fa5671d16 first implementation of Hdfs Mdstores Importer 2021-05-27 16:22:07 +02:00
Sandro La Bruzzo 714b71bd21 updated pubmed 2021-05-04 14:54:12 +02:00
Alessia Bardi 9a20057615 fixed query for organisations' pids 2021-04-29 15:23:39 +02:00
Sandro La Bruzzo 7f8848ecdd added first implementation of Pangaea Mapping 2021-04-27 11:30:37 +02:00
miconis 0393cdce42 addition of alternative names in export queries 2021-04-20 12:45:21 +02:00
miconis cadd0a5de8 modification of the queries for openorgs: they now consider also pending orgs 2021-04-20 12:06:56 +02:00
miconis 11b22b2d23 bug fix in the query, it now exports only relations with non-hidden organizations 2021-04-08 11:51:47 +02:00
miconis 0857100fb8 implementation of the tests for the openorgs integration in the openaire provision 2021-04-07 18:42:16 +02:00
miconis bf685d849f addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model 2021-04-07 14:27:43 +02:00