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753 Commits

Author SHA1 Message Date
Claudio Atzori dd19c4ac5a Merge pull request 'import_new_mdstores' (#112) from import_new_mdstores into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#112
 2021-06-14 09:23:55 +02:00
Claudio Atzori a900bfb874 delegating the date parsing to https://github.com/sisyphsu/dateparser 2021-06-11 16:53:01 +02:00
Sandro La Bruzzo e57294ac99 implemented changes on PUBMed dataflow 2021-06-03 10:52:09 +02:00
Michele Artini ede2749822 orcid pid type 2021-06-01 12:42:43 +02:00
Michele Artini f0fbfdcfae Merge branch 'stable_ids' into import_new_mdstores 2021-06-01 12:03:00 +02:00
Michele Artini e950750262 add nodes to import hdfs mdstores 2021-06-01 10:48:50 +02:00
Michele Artini 03a510859a removed coalesce(1) 2021-05-31 14:10:51 +02:00
Michele Artini e9f2b6037c patch of mdstore records 2021-05-31 11:36:26 +02:00
Michele Artini ad56a44fda save as gzipped sequence file 2021-05-28 14:45:39 +02:00
Claudio Atzori 6e3a4e9237 updated test expectations 2021-05-28 09:37:50 +02:00
Michele Artini 4fa5671d16 first implementation of Hdfs Mdstores Importer 2021-05-27 16:22:07 +02:00
Claudio Atzori 5e4b91d9ef more pervasive use of constants from ModelConstants, especially for ORCID 2021-05-26 18:20:23 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori ae5c28e54f code formatting 2021-05-20 16:13:06 +02:00
Claudio Atzori 232dce83db fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:41:15 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori d4a30fabe3 clean up tests 2021-05-05 17:28:15 +02:00
Claudio Atzori dccaf173cf fixed mapping applied to ODF records. Added unit test to verify the mapping for OpenTrials 2021-05-05 16:36:15 +02:00
Claudio Atzori 2e1eb96f9a code formatting 2021-05-05 11:23:57 +02:00
Claudio Atzori fb930b84d3 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-05-04 18:06:30 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Sandro La Bruzzo 714b71bd21 updated pubmed 2021-05-04 14:54:12 +02:00
Alessia Bardi 9a20057615 fixed query for organisations' pids 2021-04-29 15:23:39 +02:00
Sandro La Bruzzo 2129e9caa7 updated pangaea transformation to parse directly the xml 2021-04-28 10:21:03 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Sandro La Bruzzo 74484d2823 bug fixing 2021-04-27 12:13:44 +02:00
Sandro La Bruzzo 7f8848ecdd added first implementation of Pangaea Mapping 2021-04-27 11:30:37 +02:00
Claudio Atzori c25238480c making ODF record parsing namespace unaware (#6629) 2021-04-23 17:34:57 +02:00
Claudio Atzori d0d477cca3 code formatting 2021-04-20 12:50:34 +02:00
miconis 0393cdce42 addition of alternative names in export queries 2021-04-20 12:45:21 +02:00
miconis cadd0a5de8 modification of the queries for openorgs: they now consider also pending orgs 2021-04-20 12:06:56 +02:00
Claudio Atzori d1ca025b0b [cleaning] remiving authors without fullname or providing 'deactivated' keyword. Removing test test titles 2021-04-13 14:32:41 +02:00
miconis 11b22b2d23 bug fix in the query, it now exports only relations with non-hidden organizations 2021-04-08 11:51:47 +02:00
miconis 0857100fb8 implementation of the tests for the openorgs integration in the openaire provision 2021-04-07 18:42:16 +02:00
miconis bf685d849f addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model 2021-04-07 14:27:43 +02:00
miconis eaaefb8b4c implementation of the procedure to reuse content of different dbs when creating the raw graph 2021-04-06 14:35:51 +02:00
miconis c39c82dfe9 modification of the jobs for the integration of openorgs in the provision, dedup records are no more created by merging but simply taking results of openorgs portal 2021-04-06 14:31:00 +02:00
Claudio Atzori 7941d7be29 WIP: using common definitions from ModelConstants 2021-03-31 18:33:57 +02:00
Claudio Atzori 72ce741ea6 WIP: using common definitions from ModelConstants 2021-03-31 17:07:13 +02:00
Claudio Atzori 9237d55d7f [OpenOrgsWf] cleanup 2021-03-29 17:40:34 +02:00
Claudio Atzori 7f4e9479ec [OpenOrgsWf] graph construction wf: allow to skip the import openorgs node (importOpenorgs true|false) 2021-03-29 16:59:16 +02:00
miconis 2709d08fc2 Merge branch 'stable_ids' into openorgswf 2021-03-29 16:39:07 +02:00
miconis f446580e9f code refactoring (useless classes and wf removed), implementation of the test for the openorgs dedup 2021-03-29 16:10:46 +02:00
miconis 2355cc4e9b minor changes and bug fix 2021-03-29 10:07:12 +02:00
Claudio Atzori 827e7e37db [Cleaning] drop instance.alternateIdentifier elements when they are available among instance.pid 2021-03-25 11:07:59 +01:00
miconis 28c1cdd132 merged stable_ids into openorgswf 2021-03-25 10:44:49 +01:00
miconis 348b0ef921 bug fix, implementation of the workflow for the creation of raw_organizations (openorgs dedup), addition of the pid lists to the openorgs postgres db 2021-03-24 15:51:27 +01:00
Claudio Atzori 751125fdf9 [Actionmanager] zero function considers empty entity.id as well as rel.source/rel.target 2021-03-23 17:34:32 +01:00