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287 Commits

Author SHA1 Message Date
Alessia Bardi 7e0a76a8ac test fr TextGrid 2020-11-17 18:39:25 +01:00
Claudio Atzori 2bed29eb09 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:12 +01:00
Claudio Atzori 13e36a4da0 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:02 +01:00
Claudio Atzori 9b0fb9e958 merged from master 2020-11-12 09:27:12 +01:00
Sandro La Bruzzo 027ef2326c Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-06 17:12:42 +01:00
Sandro La Bruzzo cd27df91a1 fixed bug on missing relation in ANDS 2020-11-06 17:12:31 +01:00
Claudio Atzori d10447e747 re-packaged graph dump workflow sources 2020-11-05 17:38:18 +01:00
Miriam Baglioni 56150d7e5e removed all code related to the dump of pids graph 2020-11-04 17:13:12 +01:00
Miriam Baglioni c010a8442f fixed issue on test code 2020-11-03 17:26:51 +01:00
Miriam Baglioni 8ec7a61188 merge branch with master 2020-11-03 16:59:08 +01:00
Claudio Atzori 86d6fbe95b refactoring: CleaningFunctions and OafMapperUtils moved in dhp-commong 2020-11-03 12:19:46 +01:00
Claudio Atzori 3fcd669e99 result merge operation leverage on custom ResultTypeComparator in the aggregator graph construction 2020-11-03 10:53:23 +01:00
Claudio Atzori 09e44dabff Merge branch 'master' into stable_ids 2020-11-02 12:16:01 +01:00
Sandro La Bruzzo 754c86f33e fixed test to work on jenkins 2020-11-02 09:35:01 +01:00
Claudio Atzori 4ca75d6951 Merge pull request 'Dedup ID creation policy' (#48) from deduptesting into stable_ids 2020-10-30 15:15:32 +01:00
Miriam Baglioni 3241ec1777 added connection timeout and socket timeout 600 sec 2020-10-27 16:12:11 +01:00
Alessia Bardi 1425d810a8 testing mapping 2020-10-19 17:46:14 +02:00
Claudio Atzori 266bf1a221 common IdentifierFactory in use on the mapping from the aggregator data; merge the entities sharing the same id; code formatting 2020-10-16 17:02:10 +02:00
Claudio Atzori 34f1d0904b common IdentifierFactory in use on the mapping from the aggregator data 2020-10-16 16:00:19 +02:00
Sandro La Bruzzo fed711da80 Merge remote-tracking branch 'origin/master' into merge_record_to_common 2020-10-13 15:32:45 +02:00
Alessia Bardi 8775a64bc1 Merge pull request 'Merging different compatibility levels (pinocchio operator)' (#47) from merge_graph into master 2020-10-09 14:44:52 +02:00
Sandro La Bruzzo fe0a7870e6 Added test to check if merge authors works 2020-10-08 10:33:12 +02:00
Sandro La Bruzzo cd9c377d18 adpted scholexplorer Dump generation to the new Dataset definition 2020-10-08 10:10:13 +02:00
Claudio Atzori 8d85a2fced [BETA wf only] datasources involved in the merge operation doesn't obey to the infra precedence policy, but relies on a custom behaviour that, given two datasources from beta and prod returns the one from prod with the highest compatibility among the two 2020-10-07 16:28:52 +02:00
Claudio Atzori c2a6e2a9bf fixed mapping for datasource journal info (ISSNs) 2020-10-02 09:37:08 +02:00
Miriam Baglioni fcaedac980 merge branch with master 2020-10-01 16:46:59 +02:00
Claudio Atzori e265c3e125 cleaning functions factored out in a dedicated class 2020-10-01 10:50:15 +02:00
Miriam Baglioni de6c4d46d8 fixed conflicts 2020-09-24 15:35:01 +02:00
Claudio Atzori 27df1cea6d code formatting 2020-09-24 12:16:00 +02:00
Claudio Atzori fb22f4d70b included values for projects fundedamount and totalcost fields in the mapping tests. Swapped expected and actual values in junit test assertions 2020-09-24 12:10:59 +02:00
Miriam Baglioni c2b5c780ff - 2020-09-14 14:34:03 +02:00
Claudio Atzori 8a523474b7 code formatting 2020-09-07 11:40:16 +02:00
Miriam Baglioni 630a6a1fe7 first tests for the pid graph dump 2020-08-24 16:51:26 +02:00
Miriam Baglioni 66d0e0d3f2 - 2020-08-19 11:31:50 +02:00
Miriam Baglioni d407852ac2 changed to reflect the changed in the model 2020-08-19 11:15:05 +02:00
Miriam Baglioni 47c21a8961 refactoring due to compilation 2020-08-19 11:11:57 +02:00
Miriam Baglioni d2a8a4961a refactoring 2020-08-13 18:50:33 +02:00
Miriam Baglioni fd48ae3b85 changed because of D-Net/dnet-hadoop#40 (comment) 2020-08-13 12:19:15 +02:00
Miriam Baglioni 04a3e1ab38 disabled tests 2020-08-13 12:18:13 +02:00
Miriam Baglioni 2ede397933 Apply change because of D-Net/dnet-hadoop#40 (comment) 2020-08-13 12:16:39 +02:00
Miriam Baglioni adf9f96a67 test for extraction of relation between organizations and context 2020-08-12 10:04:47 +02:00
Miriam Baglioni 25f4fbceea draft of test and resources 2020-08-11 17:37:22 +02:00
Miriam Baglioni b08511287b - 2020-08-11 16:01:36 +02:00
Miriam Baglioni 7e81a17068 changed the XQUERY to mirror the change in the code 2020-08-11 16:00:33 +02:00
Miriam Baglioni 37ad2f28e9 removed added | in prefix for datasource 2020-08-11 15:55:06 +02:00
Miriam Baglioni f31c2e9461 enabled test 2020-08-11 15:49:25 +02:00
Miriam Baglioni 2d67476417 merge branch with master 2020-08-11 15:46:04 +02:00
Miriam Baglioni 6d3804e24c - 2020-08-11 15:45:12 +02:00
Miriam Baglioni 0603ec4757 changed test to upload the dump for covid-19 community 2020-08-11 15:43:25 +02:00
Miriam Baglioni 7dfd56df9d - 2020-08-11 15:42:35 +02:00
Miriam Baglioni a169d7e7c1 added test file for the MakeTar class 2020-08-11 15:40:41 +02:00
Miriam Baglioni c378c38546 disabled test. The testing functionalities for hte upload in Zenode are moved to common 2020-08-10 12:41:11 +02:00
Miriam Baglioni 63ad0ed209 changed to use communityMapPath instead of IsLookUp 2020-08-10 12:40:19 +02:00
Miriam Baglioni f50e3e7333 changed the class for which to generate the schema 2020-08-10 12:03:49 +02:00
Miriam Baglioni b8c26f656c test using communityMapPath instead of isLookUp 2020-08-10 12:02:55 +02:00
Miriam Baglioni 545ea9f77e moved in common. Zenodo response model and APIClient to deposit in Zenodo 2020-08-07 16:44:51 +02:00
Miriam Baglioni adf0ca5aa7 test to send is from hdfs 2020-08-05 14:24:43 +02:00
Alessia Bardi a29565ff57 code formatting 2020-08-04 12:55:27 +02:00
Alessia Bardi 09a323d18d testing a dataset from Nakala 2020-08-04 12:50:52 +02:00
Miriam Baglioni 5b651abf82 merge branch with master 2020-08-04 10:14:07 +02:00
Miriam Baglioni e9fcc0b2f1 commented test unit - to decide change for mirroring the changed logics 2020-08-03 18:10:53 +02:00
Alessia Bardi 8cc067fe76 specific test for claims 2020-08-03 11:17:50 +02:00
Michele Artini 652b13abb6 Merge branch 'master' into nsprefix_blacklist 2020-07-31 07:58:37 +02:00
Claudio Atzori cd631bb5bc defaults fixed in the cleaning workflow forces result.publisher to NULL when result.publisher.value in empty 2020-07-30 17:03:53 +02:00
Miriam Baglioni 872d7783fc - 2020-07-30 16:50:36 +02:00
Claudio Atzori 4ff8007518 added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step 2020-07-30 16:24:39 +02:00
Michele Artini bdece15ca0 blacklist of nsprefix 2020-07-30 16:13:38 +02:00
Miriam Baglioni ef1d8aef17 added one test to verify the dump for the datasources 2020-07-29 18:27:46 +02:00
Miriam Baglioni 1433db825d refactorign 2020-07-29 17:43:24 +02:00
Miriam Baglioni 8ad8dac7d4 merge branch with fork master 2020-07-29 17:38:28 +02:00
Miriam Baglioni 4d7f590493 testings for the whole graph dump 2020-07-29 17:32:37 +02:00
Miriam Baglioni a2f73ec2c7 changed due to changes in the model 2020-07-29 17:32:02 +02:00
Miriam Baglioni 481585e9d3 - 2020-07-29 17:31:41 +02:00
Miriam Baglioni de2ebb467e changed due to changes in the model 2020-07-29 17:08:02 +02:00
Miriam Baglioni d0ff2a56fb - 2020-07-29 17:06:53 +02:00
Miriam Baglioni b96dedb56b changed due to changes in the model 2020-07-29 17:05:31 +02:00
Michele Artini 35e6e9c064 tests 2020-07-28 12:02:15 +02:00
Miriam Baglioni 332258d199 split the classes related to the communities dump and to the whole graph dump 2020-07-24 17:21:48 +02:00
Sandro La Bruzzo 9ab594ccf6 fixed test 2020-07-21 10:36:21 +02:00
Miriam Baglioni 40bbe94f7c merge with master fork 2020-07-20 18:10:03 +02:00
Miriam Baglioni 5076e4f320 changed test to comply with the modifications 2020-07-20 17:55:18 +02:00
Claudio Atzori 54ac583923 code formatting 2020-07-20 17:37:08 +02:00
Claudio Atzori 124e7ce19c in case of missing attribute //dr:CobjCategory/@type the resulttype is derived by looking up the vocabulary dnet:result_typologies with the 1st instance type available 2020-07-20 17:33:37 +02:00
Claudio Atzori 050dda223d Merge pull request 'removed duplicated fields' (#25) from unique_field_in_lists into master 
Looks good as a temporary workaround. I agree the model could seamlessly make the distinct operation by using HashSets instead of Linked (or Array) Lists.

The task to update the model in such a way is added on #9#issuecomment-1583

Thanks!
 2020-07-20 12:12:50 +02:00
Michele Artini 331a3cbdd0 fixed originalId 2020-07-20 09:50:29 +02:00
Michele Artini 442f30930c removed duplicated fields 2020-07-17 12:25:36 +02:00
Sandro La Bruzzo c01efed79b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-10 14:44:57 +02:00
Sandro La Bruzzo a7d3977481 added generation of EBI Dataset 2020-07-10 14:44:50 +02:00
Claudio Atzori 67e1d222b6 bulk cleaning when found null or empty, sets bestaccessrights evaluating the result instances 2020-07-08 17:53:35 +02:00
Alessia Bardi 9a898c0e4c Json schema generator 2020-07-08 12:52:00 +02:00
Miriam Baglioni 7fe00cb4fb - 2020-07-08 10:29:37 +02:00
Miriam Baglioni 375ef07d7b changed the description for the upload 2020-07-07 18:41:27 +02:00
Miriam Baglioni 817cddfc52 - 2020-07-07 18:25:12 +02:00
Miriam Baglioni a66aa9bd83 removed unuseful tests 2020-07-07 18:25:00 +02:00
Miriam Baglioni 9b20a21b24 removed unuseful tests 2020-07-07 18:23:37 +02:00
Miriam Baglioni e6c79d44e6 - 2020-07-02 16:02:02 +02:00
Miriam Baglioni 94500a581b merge branch with fork master 2020-07-02 14:25:39 +02:00
Sandro La Bruzzo 1d420eedb4 added generation of EBI Dataset 2020-07-02 12:37:43 +02:00
Miriam Baglioni 3e5570de7a - 2020-06-23 15:44:54 +02:00
Michele Artini 38bb45d0b6 test osf:refereed 2020-06-23 10:14:39 +02:00
Miriam Baglioni e4b21be004 - 2020-06-22 17:31:50 +02:00
Miriam Baglioni df80ae5c1b merge branch with fork master 2020-06-22 10:51:23 +02:00
Miriam Baglioni e8f914f8b3 - 2020-06-22 10:50:41 +02:00
Claudio Atzori d0ac7514b2 cleaning workflow to include cleaning of default values 2020-06-18 19:37:25 +02:00
Miriam Baglioni fb80353018 - 2020-06-18 14:21:36 +02:00
Miriam Baglioni 65bf312360 merge branch with fork master 2020-06-18 11:35:27 +02:00
Miriam Baglioni a118b66858 - 2020-06-18 11:34:30 +02:00
Miriam Baglioni 8b145e6aba - 2020-06-18 11:25:28 +02:00
Miriam Baglioni 5c8533d1a1 changed in the testing classes 2020-06-18 11:20:08 +02:00
Miriam Baglioni bc8611a95a added new resources for testing 2020-06-18 11:19:20 +02:00
Claudio Atzori 89859111ee Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-16 15:28:29 +02:00
Michele Artini 8a4f84f8c0 refactoring 2020-06-16 12:34:13 +02:00
Claudio Atzori 2a4f65795f WIP: graph cleaner implementation 2020-06-15 18:32:24 +02:00
Miriam Baglioni 9dd3ef22c5 merge branch with fork master 2020-06-15 11:23:26 +02:00
Miriam Baglioni 0467145ae3 test for graph dump 2020-06-15 11:13:51 +02:00
Miriam Baglioni 20b9e67728 added new class funder 2020-06-15 11:06:18 +02:00
Claudio Atzori 0d52816244 WIP: graph cleaner implementation 2020-06-13 13:06:04 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 97b1c4057c WIP: graph cleaner implementation 2020-06-12 10:45:18 +02:00
Miriam Baglioni e145972962 - 2020-06-11 13:08:39 +02:00
Miriam Baglioni 356dd582a3 map construction moved in class 2020-06-11 12:59:22 +02:00
Miriam Baglioni db27663750 - 2020-06-11 10:49:01 +02:00
Miriam Baglioni bb9f21d0e7 job test for class producing first step of results dump 2020-06-11 10:20:05 +02:00
Claudio Atzori 953da4a427 Merge branch 'master' into graph_cleaning 2020-06-10 21:36:56 +02:00
Michele Artini 7177a32d75 import of invisible stores 2020-06-10 10:04:00 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Claudio Atzori d9f33582c5 WIP: graph cleaner implementation 2020-06-09 17:20:40 +02:00
Michele Artini adb798faa5 import from db using is vocabularies 2020-05-29 12:03:51 +02:00
Michele Artini 3ceb2d2853 match terms with vocabularies 2020-05-27 11:34:13 +02:00
Claudio Atzori de108f54d6 code formatting 2020-05-23 10:21:19 +02:00
Claudio Atzori 6b56cae57d added mapping for bestaccessrights 2020-05-23 09:57:39 +02:00
Michele Artini dc4621b3cb filter ORCID e MAG identifiers 2020-05-22 12:25:01 +02:00
Michele Artini 9f2d0f1b08 filter ORCID e MAG identifiers 2020-05-22 11:00:27 +02:00
Claudio Atzori 7a89507ab1 code formatting 2020-05-15 15:16:54 +02:00
Claudio Atzori cfc8948717 fixed mapping OdfToGraph: pick the correct element to map author pids and author affiliations; extended mapping Oaf2Graph: added support for author pids 2020-05-15 12:26:16 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Claudio Atzori 48157e0fc4 GraphHiveImporterJob moved in dedicate package 2020-04-24 14:32:28 +02:00
Michele Artini 072eae3803 fixed a problem with missing contexts 2020-04-23 16:42:49 +02:00
Michele Artini d920ce501e fixed a problem with missing instances 2020-04-23 16:18:40 +02:00
Claudio Atzori d772d967aa restored changes from master branch 2020-04-20 18:53:06 +02:00
miconis 4da13e4570 Revert "Merge branch 'master' into deduptesting" 
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
 2020-04-20 16:04:49 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Michele Artini 8ff7facfa3 fixed collectedFrom ID 2020-04-20 11:09:27 +02:00
Michele Artini d2058fdc47 tests 2020-04-20 09:31:14 +02:00
Michele Artini 478a958f09 tests 2020-04-20 09:15:27 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Claudio Atzori 6b5f9ca9cb raw graph creation workflow moved under dhp-graph-mapper, claims integration is included 2020-04-10 17:53:07 +02:00
Claudio Atzori 47f3d9b757 unit test for GraphHiveImporterJob 2020-04-08 13:24:43 +02:00