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2736 Commits

Author SHA1 Message Date
Miriam Baglioni 2b7b05fb29 New propagation of ORCID to result exploiting the semantic relation connecting them. R has author with orcid o, R is bounf by strong semantic relationship with R1 that has the same author withouth orcid, then o is also associated to the author in R1 2020-02-28 18:22:41 +01:00
Miriam Baglioni 833c83c694 Wrong file name 2020-02-28 18:21:01 +01:00
Miriam Baglioni a86426776a Changed from Oaf to Result the type of the updateResult method parameter, not to be forced to cast each time 2020-02-28 18:20:19 +01:00
Sandro La Bruzzo b32655e48e changed code to save intermediate result 2020-02-27 10:18:46 +01:00
Claudio Atzori 60bc2b1a20 drop the hive DB before populating it from scratch 2020-02-27 10:10:55 +01:00
Sandro La Bruzzo f09e065865 incremented number of repartition 2020-02-26 19:26:19 +01:00
Sandro La Bruzzo 071f5c3e52 fixed NPE 2020-02-26 15:42:20 +01:00
Sandro La Bruzzo a1a6fc8315 fixed NPE 2020-02-26 15:42:13 +01:00
Sandro La Bruzzo 1edf02a3ce added log 2020-02-26 15:25:03 +01:00
Sandro La Bruzzo c3ecabd8e8 fixed NPE 2020-02-26 14:40:02 +01:00
Sandro La Bruzzo 5d0f46651b fixed NPE 2020-02-26 14:31:34 +01:00
Sandro La Bruzzo bc342bf73a fixed wrong generation type in summary 2020-02-26 12:49:47 +01:00
Sandro La Bruzzo 3112e21858 fixed typo 2020-02-26 12:22:43 +01:00
Sandro La Bruzzo 119ae6eef5 fixed wrong loop in the workflow 2020-02-26 12:18:50 +01:00
Sandro La Bruzzo 7936583a3d added generation of Scholix collection 2020-02-26 12:09:06 +01:00
Przemysław Jacewicz 02db368dc5 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-02-26 11:50:20 +01:00
Sandro La Bruzzo 2ef3705b2c Added Provision workflow 2020-02-26 10:51:35 +01:00
Michele Artini 689908b2e9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-25 16:00:51 +01:00
Michele Artini 93665773ea Fixed a problem with JavaRDD Union 2020-02-25 15:59:21 +01:00
Sandro La Bruzzo b021b8a2e1 Added index wf 2020-02-24 10:15:55 +01:00
Claudio Atzori 6a73fd5da5 in order to reuse the same XmlRecordFactory across different tasks, the state of contexts must be one per record built 2020-02-21 09:17:19 +01:00
Michele Artini d49cd2fdc6 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-02-20 11:21:54 +01:00
Miriam Baglioni 3f941a2af4 Merge branch 'master' into propagationCommunityToResult 2020-02-19 18:05:22 +01:00
Miriam Baglioni b2bdc9b99b merging project to result propagation logic to master 2020-02-19 18:04:59 +01:00
Miriam Baglioni a153a07997 none 2020-02-19 18:03:13 +01:00
Miriam Baglioni d0279af630 start to implement the business logic 2020-02-19 17:59:24 +01:00
Miriam Baglioni 5f63ab1416 to query the information system to get the list of comunities up to now. It will have a more general usage when introducing bulk tagging 2020-02-19 17:59:02 +01:00
Miriam Baglioni 5ceb174d24 Merge branch 'master' into propagationCommunityToResult 2020-02-19 17:13:38 +01:00
Miriam Baglioni e8af7a6b64 Merge remote-tracking branch 'upstream/master' 2020-02-19 17:03:10 +01:00
Miriam Baglioni 79ff79b0cd propagation of result to community through semantic relation: C -> R and R -> isSupplementedBy R1 => C -> R1 2020-02-19 17:02:39 +01:00
Claudio Atzori 5e5e32cb48 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-02-19 16:56:52 +01:00
Claudio Atzori 33185fd0b7 ISLookupClientFactory moved in dhp-common 2020-02-19 16:56:38 +01:00
Michele Artini 5d3739b5cf migration of claims 2020-02-19 15:11:17 +01:00
Miriam Baglioni ab84163bb3 added set accumulator in TypedRow and used it to acucmulate country information in Country Propagation 2020-02-19 15:02:50 +01:00
Miriam Baglioni bb0fdf5e0a fix wrong source target in new relation 2020-02-19 15:00:46 +01:00
Miriam Baglioni 9e1678ccf8 fix error in workflow name 2020-02-19 14:59:24 +01:00
Miriam Baglioni 8aa3b4d7c0 adding to propagation constants the ones needed for propagation of project to result and addition of new accumulator Set in typed row to collect values of a type 2020-02-19 14:55:54 +01:00
Miriam Baglioni 7167673a58 implementation and configuration for propagation of project to result through semantic relation: P -> R1 and R1 -> supplemented by -> R2 => P -> R2 2020-02-19 14:54:18 +01:00
Michele Artini 173f1df1e5 saved a query for openaire production database 2020-02-19 10:15:08 +01:00
Sandro La Bruzzo 9a2d74ac82 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-19 10:13:45 +01:00
Sandro La Bruzzo e5d7cdf422 fixed sql query 2020-02-19 10:13:36 +01:00
Sandro La Bruzzo 2b8675462f refactoring code 2020-02-19 10:07:08 +01:00
Miriam Baglioni b81e6af429 added config for new propagation 2020-02-18 17:30:44 +01:00
Miriam Baglioni b736a9581c changed relclass and reltype in reelation specification for country propagation and implementation of propagation of result affiliation through institutional repositories 2020-02-18 17:27:28 +01:00
Miriam Baglioni ed262293a6 aligned to new snapshot version 1.1.6 2020-02-18 17:25:32 +01:00
Miriam Baglioni 2688a89c21 changed relclass and reltype in relation specification 2020-02-18 17:24:40 +01:00
Miriam Baglioni c0022fec9f moved on upper package to serve other propagations 2020-02-18 17:24:11 +01:00
Miriam Baglioni e0a777028a fix problem in parameters 2020-02-18 17:23:34 +01:00
Claudio Atzori ed76521d9b removed stale test resources, will be re-added later on 2020-02-18 11:51:08 +01:00
Claudio Atzori 0f364605ff removed stale tests, need to reimplemente them anyway 2020-02-18 11:48:19 +01:00
Miriam Baglioni 5868ff8a86 synch fork with master 2020-02-17 18:22:27 +01:00
Przemysław Jacewicz 958f0693d6 WIP: logic for promoting action sets added 2020-02-17 18:19:19 +01:00
Miriam Baglioni 18e4092d5c change name of properties dir 2020-02-17 18:07:06 +01:00
Miriam Baglioni bd0e504b42 changes to the wf configuration 2020-02-17 18:04:15 +01:00
Miriam Baglioni 3a9d723655 adding default parameters in code 2020-02-17 16:30:52 +01:00
Przemysław Jacewicz bea1a94346 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 
# Conflicts:
#	dhp-workflows/pom.xml
 2020-02-17 15:07:23 +01:00
Claudio Atzori 6a288625e5 fixed workflow outgoing node 2020-02-17 15:04:33 +01:00
Miriam Baglioni a5517eee35 adding the mkdirs for creation of propagation folder under provision on tmp 2020-02-17 14:20:42 +01:00
Miriam Baglioni 9abde5cfac removed outputPath from job parameters 2020-02-17 14:19:53 +01:00
Claudio Atzori 1b18fd4d54 sync with master branch 2020-02-17 13:49:46 +01:00
Sandro La Bruzzo 4f04759738 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-17 12:31:58 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Miriam Baglioni be2421d5d8 removed wrongly pushed file 2020-02-17 12:07:26 +01:00
Claudio Atzori c460e2d281 Aggiornare 'dhp-workflows/docs/oozie-installer.markdown' 2020-02-17 11:54:48 +01:00
Miriam Baglioni c7bc73aedf country propagation for results collected from institutional repositories 2020-02-17 11:44:48 +01:00
Michele Artini 176c5606bd aligned with origin/master, aligned model and mapping 2020-02-17 10:40:53 +01:00
Claudio Atzori 56d1810a66 working procedure for records indexing using Spark, via lib com.lucidworks.spark:spark-solr 2020-02-14 12:28:52 +01:00
Claudio Atzori 1ee1baa8c0 Merge branch 'master' into provision_indexing 2020-02-13 18:17:07 +01:00
Claudio Atzori a3d0b57b25 [maven-release-plugin] prepare for next development iteration 2020-02-13 18:11:33 +01:00
Claudio Atzori 6ed9a15bc8 [maven-release-plugin] prepare release dhp-1.1.5 2020-02-13 18:11:31 +01:00
Claudio Atzori 49e648f7c3 bumped version 2020-02-13 18:09:31 +01:00
Claudio Atzori f9fae97e09 test json files aligned with the latest model changes 2020-02-13 18:05:59 +01:00
Claudio Atzori 1fee6e2b7e implemented XML records construction and serialization, indexing WIP 2020-02-13 16:53:27 +01:00
Michele Artini 80cb52593f bug fixing 2020-02-13 15:34:13 +01:00
Michele Artini cdea0dae75 bug fixing 2020-02-12 16:34:00 +01:00
Michele Artini 69336195d3 simplifications 2020-02-12 11:12:38 +01:00
Michele Artini 06c2fd6df9 bug fixing 2020-02-11 15:29:50 +01:00
Michele Artini 5fc09b179c bug fixing 2020-02-11 12:48:03 +01:00
Michele Artini 95740767e0 Ready for tests 2020-02-10 16:04:06 +01:00
Michele Artini 181e8498d4 ... 2020-02-07 16:02:49 +01:00
Przemysław Jacewicz 86b60268bb actionmanager implementation prototyping 2020-02-06 19:14:41 +01:00
Michele Artini bb1533a07e partial commit 2020-02-05 15:35:40 +01:00
Michele Artini fbb0fc140b partial implementation of migration 2020-02-04 15:25:47 +01:00
Claudio Atzori 7ba0f44d05 WIP 2020-01-30 18:21:07 +01:00
Claudio Atzori 49ef2f4eb1 removed input parameter specification, SparkXmlRecordBuilderJob doesn't need hive 2020-01-30 18:20:26 +01:00
Claudio Atzori b5e1e2e5b2 reintegrated changes from fcbc4ccd70 2020-01-30 18:11:04 +01:00
Claudio Atzori 7bacd6812e Merge branch 'provision_indexing' of https://code-repo.d4science.org/D-Net/dnet-hadoop into HEAD 
 Conflicts:
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/GraphJoiner.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/MappingUtils.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/RelatedEntity.java
	dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/SparkXmlRecordBuilderJob.java
 2020-01-30 17:59:46 +01:00
Claudio Atzori b2691a3b0a save adjacency list as JoinedEntity 2020-01-30 17:46:29 +01:00
Claudio Atzori 8c2aff99b0 joining entities using T x R x S, WIP: last representation based on LinkedEntity type 2020-01-29 15:40:33 +01:00
Sandro La Bruzzo 19a80e4638 implemented workfow for aggregation and generation of infospace graph 2020-01-24 09:58:55 +01:00
Claudio Atzori fcbc4ccd70 a bit of docs doesn't hurt 2020-01-24 08:43:23 +01:00
Claudio Atzori a55f5fecc6 joining entities using T x R x S method with groupByKey, WIP: making target objects (T) have lower memory footprint 2020-01-24 08:17:53 +01:00
Michele Artini 6bfe2dc96e partial implementation 2020-01-22 16:00:23 +01:00
Claudio Atzori 799929c1e3 joining entities using T x R x S method with groupByKey 2020-01-21 16:35:44 +01:00
Michele Artini f6eccdde33 partial implementation 2020-01-21 14:17:05 +01:00
Michele Artini cd114f1c3b partial update 2020-01-21 12:32:10 +01:00
Michele Artini b35c59eb42 partial implementation of entities from db 2020-01-20 16:04:19 +01:00
Michele Artini 81f82b5d34 partial implementation of applications to migrate entities 2020-01-17 15:26:21 +01:00
Claudio Atzori 1cd6899480 merged from master 2020-01-17 14:25:57 +01:00
Claudio Atzori 97c239ee0d WIP: trying to find a way to build the records for the index 2020-01-16 12:02:28 +02:00
miconis 4955be0197 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-01-14 15:03:44 +02:00
miconis f61adfc2bb minor changes 2020-01-14 15:03:27 +02:00
miconis 9bdcb02179 minor changes and update of the configuration for publications 2020-01-14 15:01:03 +02:00
Michele Artini f7b9a7a9af entity migration (partial implementation) 2020-01-10 15:55:23 +01:00
Michele Artini 7229fecbcf fix warnings in poms 2019-12-20 13:41:08 +01:00
Sandro La Bruzzo dd21db7036 fixed stuff 2019-12-18 16:28:22 +01:00
Claudio Atzori 7ba586d2e5 oozie workflow aimed to build the adjacency lists representation of the graph, needed to build the records to be indexed 2019-12-17 16:24:49 +01:00
Sandro La Bruzzo 76efcde4fd using new branch decisionTreeDedup 2019-12-13 12:20:35 +01:00
Sandro La Bruzzo b4392f9f43 implemented DedupRecord factory for missing entities 2019-12-13 09:40:02 +01:00
Sandro La Bruzzo 39367676d7 implemented DedupRecord factory with the merge of project 2019-12-12 15:18:48 +01:00
Sandro La Bruzzo 6b45e37e22 implemented DedupRecord factory with the merge of organizations 2019-12-11 16:57:37 +01:00
Sandro La Bruzzo abd9034da0 implemented DedupRecord factory with the merge of publications 2019-12-11 15:43:24 +01:00
miconis 4b66b471a4 implementation of the sorting by trust mechanism and the merge of oaf entities 2019-12-10 14:57:16 +01:00
Sandro La Bruzzo cc63706347 Implemented deduplication on spark 2019-12-06 13:38:00 +01:00
Sandro La Bruzzo aad0cb40b7 Added schema Scholexplorer 2019-11-14 10:34:09 +01:00
Claudio Atzori 5711e75f67 use ${project.version} whenever possible 2019-11-08 17:41:51 +01:00
Claudio Atzori 245b4cbbb3 removed import limit 2019-11-08 17:41:01 +01:00
Claudio Atzori 7fe6835b47 [maven-release-plugin] prepare for next development iteration 2019-11-07 17:39:30 +01:00
Claudio Atzori 58918967d9 [maven-release-plugin] prepare release dhp-1.0.4 2019-11-07 17:39:27 +01:00
Claudio Atzori 5308f05a02 allow to speficy the target hive DB name in the infospace import workflow 2019-11-07 17:38:09 +01:00
Claudio Atzori a52d5bde4f simplified import procedure, maps the infospace as hive tables 2019-11-06 17:45:52 +01:00
Claudio Atzori 1e7a2ac41d align parmeter names, graph import procedure WIP 2019-11-04 17:41:01 +01:00
Claudio Atzori f39148dab8 [maven-release-plugin] prepare for next development iteration 2019-11-04 12:34:48 +01:00
Claudio Atzori 34b0e7b40a [maven-release-plugin] prepare release dhp-1.0.3 2019-11-04 12:34:46 +01:00
Claudio Atzori 439ad80d81 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:33:23 +01:00
Claudio Atzori 32ed4ae8d6 conversion utilities from protobuffer model to DHP model moved in dnet-mapreduce-jobs. Removed also the relative protobuf dependencies 2019-11-04 12:28:56 +01:00
Sandro La Bruzzo fd0ad82111 [maven-release-plugin] prepare for next development iteration 2019-10-31 12:08:51 +01:00
Sandro La Bruzzo f224613b40 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:08:49 +01:00
Sandro La Bruzzo e13c30cc96 [maven-release-plugin] rollback the release of dhp-1.0.2 2019-10-31 12:07:04 +01:00
Sandro La Bruzzo 4da5239203 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:06:14 +01:00
Sandro La Bruzzo db8b346edd [maven-release-plugin] rollback the release of 1.0.1 2019-10-31 11:49:05 +01:00
Sandro La Bruzzo fc80052173 [maven-release-plugin] prepare for next development iteration 2019-10-31 11:47:42 +01:00
Sandro La Bruzzo 3150c7ce6d [maven-release-plugin] prepare release 1.0.1 2019-10-31 11:47:40 +01:00
Sandro La Bruzzo 18ec8e8147 moved protoutils function to dhp-schemas 2019-10-31 11:31:37 +01:00
Sandro La Bruzzo 997e57d45b Added entity filter to spark class 2019-10-30 12:19:03 +01:00
Sandro La Bruzzo a336956708 added defautl property to job 2019-10-30 12:01:42 +01:00
Claudio Atzori 78b5b57e86 trying to make the spark action to be run as spark2 2019-10-29 18:56:34 +01:00
Claudio Atzori c8bb81cd9a align dependencies with IIS cluster 2019-10-29 18:10:20 +01:00
Sandro La Bruzzo fe62ccd6dd implemented oozie wf 2019-10-28 12:12:50 +01:00
Sandro La Bruzzo 9ee4e5a196 remove a bit of syntactic sugar on the object inheritance :( 2019-10-25 18:10:30 +02:00
Sandro La Bruzzo c74335ebc7 resolved conflict 2019-10-25 14:34:50 +02:00
Sandro La Bruzzo 8c902c500a minor fix 2019-10-25 14:33:54 +02:00
miconis 9fa5aebe9c minor changes 2019-10-25 12:52:28 +02:00
miconis 551eda1600 dataset, orp and software mapping implemented. addition of test resources for results. implementation of tests to check the result of the mapping 2019-10-25 12:48:25 +02:00
Sandro La Bruzzo eef14fade3 fixed conflict 2019-10-25 11:58:20 +02:00
Sandro La Bruzzo 0ea7e861ab added organizations test 2019-10-25 11:56:28 +02:00
miconis 4908165e05 implementation of the createPublication method to map publications 2019-10-25 11:54:14 +02:00
miconis df37bd6aaf placeholders for setters in createpublication 2019-10-25 10:57:19 +02:00
Sandro La Bruzzo c8d6d6bbd1 implemented organization mapping 2019-10-25 10:23:51 +02:00
miconis b525b54130 starting implementing the createPublication class 2019-10-25 09:55:31 +02:00
Claudio Atzori 4b331790e7 resolved conflicts 2019-10-25 09:45:12 +02:00
Claudio Atzori c929c1dfac more proto 2 graph model mappings 2019-10-25 09:25:36 +02:00
Sandro La Bruzzo 09ffda03a2 removed circular dependencies 2019-10-25 09:24:18 +02:00
Sandro La Bruzzo a10d071cf4 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:55:44 +02:00
Sandro La Bruzzo 3a8bb11695 mapped first part 2019-10-24 17:55:40 +02:00
Claudio Atzori d46371ceab Merge branch 'master' of https://code-repo.d2science.org/D-Net/dnet-hadoop 2019-10-24 17:43:55 +02:00
Claudio Atzori 0d88f9a6a4 added mapping for projects 2019-10-24 17:43:42 +02:00
Sandro La Bruzzo 2dd9572f41 added Mapping of OriginalDescription 2019-10-24 17:36:44 +02:00
miconis 351d850ad3 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:29:07 +02:00
miconis b66a7e3030 publication test added 2019-10-24 17:29:01 +02:00
Sandro La Bruzzo 6c32d418ac added conversion of ExtraInfo 2019-10-24 17:26:55 +02:00
Claudio Atzori 5f339a2c24 added mappings for basic types 2019-10-24 17:21:45 +02:00
Sandro La Bruzzo 9d04111391 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2019-10-24 17:05:52 +02:00
Sandro La Bruzzo 0902bac7dd fixed conflict 2019-10-24 17:05:42 +02:00
Claudio Atzori d8bfaa3687 added mapping for relations 2019-10-24 17:04:13 +02:00
Sandro La Bruzzo d2965636e0 created test for convert json into new OAF data model 2019-10-24 17:02:35 +02:00
Claudio Atzori 79c4f1bbd8 Protobuf to internal graph model, early steps 2019-10-24 16:56:13 +02:00
Claudio Atzori d38aeb8c6e DataInfo.provenanceaction not repeatable, fluent setters 2019-10-24 16:55:38 +02:00
Sandro La Bruzzo 5744a64478 added module dhp=graph-mapper 2019-10-24 16:00:28 +02:00
Sandro La Bruzzo 5a8a323f2a dhp-collection-worker integrated in dhp-workflows 2019-10-24 11:36:59 +02:00
Claudio Atzori dd1d6fcb01 moved libs in main pom file 2019-10-18 10:50:55 +02:00
Claudio Atzori 176a13601b commented out maven plugin for integration tests 2019-10-18 10:50:32 +02:00
Claudio Atzori 0c284e0a51 doc 2019-10-18 09:42:41 +02:00
Claudio Atzori c7654b6fe3 renamed collection & transformation oozie workflow files 2019-10-18 09:42:20 +02:00
Claudio Atzori 44d7e85797 imported oozie-installer.markdown docs from https://github.com/openaire/iis/blob/master/iis-wf/docs/oozie-installer.markdown 2019-10-17 18:43:43 +02:00
Claudio Atzori 27db5afdad integrating the oozie workflow build/deploy/run mechanism, took inspiration from iis 2019-10-17 18:38:30 +02:00
Sandro La Bruzzo bbb87d0e3d implemented saxonHE on transformation spark job 2019-10-10 11:33:51 +02:00
Sandro La Bruzzo 4b8c7c279d Added documentation on a class, and reused ArgumetApplicationParser on dhp-aggregation 2019-10-07 17:02:53 +02:00
Sandro La Bruzzo 53ec9bccca changed the implemetation of RabitMQ Comunication 2019-04-16 12:28:01 +02:00
Sandro La Bruzzo 403c13eebf Implemented message manager, Fixed bug on collection worker, implemented Collecion and Transform spark job 2019-04-11 15:39:29 +02:00
Sandro La Bruzzo ded6aef5e1 moved collector worker 2019-04-03 16:05:16 +02:00
Sandro La Bruzzo c2ecbf5572 moved collector worker 2019-04-03 16:03:36 +02:00
enricoottonello b316467608 added common module 2019-04-03 10:53:54 +02:00
Sandro La Bruzzo 12c65eab4c implemented command line 2019-03-25 15:18:31 +01:00
Sandro La Bruzzo 6156562893 Added test 2019-03-18 10:47:28 +01:00
Sandro La Bruzzo e67d9ee1a9 added first implementation of dnet-workflows 2019-03-18 10:44:35 +01:00