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2362 Commits

Author SHA1 Message Date
Miriam Baglioni 4c8b4a774c removed not needed code 2021-05-21 14:40:07 +02:00
Miriam Baglioni 53b9d87fec new prepareProgramme according to the new file 2021-05-21 11:49:31 +02:00
Miriam Baglioni 1ee8f13580 refactoring and added "left" as join type to be 100% sure to get the whole set of projects 2021-05-21 11:49:05 +02:00
Miriam Baglioni e07c3ba089 due to change in the input file the filtering step is no more needed 2021-05-21 11:47:43 +02:00
Miriam Baglioni 54f6e2f693 changed to get the needed information to build the action set as parallel jobs 2021-05-21 11:47:00 +02:00
Miriam Baglioni 7180505519 removed non needed variable 2021-05-21 11:46:13 +02:00
Miriam Baglioni 2eb1a8b344 changed because the input file changed 2021-05-21 11:40:20 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Miriam Baglioni 9610224671 added param to workflow property 2021-05-20 18:21:12 +02:00
Claudio Atzori 863b56b6ce using constants from ModelConstants 2021-05-20 16:23:58 +02:00
Claudio Atzori ae5c28e54f code formatting 2021-05-20 16:13:06 +02:00
Miriam Baglioni aa45b4df9b - 2021-05-20 15:57:40 +02:00
Miriam Baglioni 052c837843 - 2021-05-20 15:54:44 +02:00
Claudio Atzori b695932ae4 integrated pull#108 2021-05-20 15:34:04 +02:00
Claudio Atzori b572f56763 Merge branch 'master' into master 2021-05-20 15:22:35 +02:00
Claudio Atzori 2578b7fbb3 code formatting 2021-05-20 14:59:02 +02:00
Miriam Baglioni dc0ad8d2e0 fixed issue related to change in the file name downloaded. Added sheet name as parameter and also a check if the name should change 2021-05-20 14:53:53 +02:00
Claudio Atzori 232dce83db fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:41:15 +02:00
Claudio Atzori aef2977ad0 fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:40:22 +02:00
Miriam Baglioni 02b80cf24f resolved conflicts 2021-05-20 10:59:39 +02:00
Claudio Atzori c4a23c2f4d fix: preserving the old identifier among the originalIds in the doiboost construction process, trying to avoid UnsupportedOperationException while adding elements to the originalIds 2021-05-19 16:01:52 +02:00
Claudio Atzori ba03f549d7 fix: preserving the old identifier among the originalIds in the doiboost construction process 2021-05-19 15:43:26 +02:00
Claudio Atzori 239d0f0a9a ROR actionset import workflow backported from branch stable_ids 2021-05-18 16:12:11 +02:00
Michele Artini e56ccec536 Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_ids 2021-05-18 14:00:28 +02:00
Michele Artini c1e20de7cf fixed the deserialization of a json property 2021-05-18 14:00:14 +02:00
Claudio Atzori a9f512103b using constants from ModelConstants 2021-05-18 11:19:07 +02:00
Claudio Atzori eeb8bcf075 using constants from ModelConstants 2021-05-18 11:10:07 +02:00
Claudio Atzori 2cbf15f4fb using ModelConstants 2021-05-17 09:54:45 +02:00
Claudio Atzori f19feceaf0 set the old identifier before switching to the new one 2021-05-14 12:53:40 +02:00
Claudio Atzori 1bd70fa2c6 preserving the old identifier among the originalIds in the doiboost construction process 2021-05-14 11:30:41 +02:00
Claudio Atzori ca3f3a7687 using ModelConstants 2021-05-14 11:29:49 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori 609eb711b3 IndexRecordTransformerTest for producing a record that can be manually submitted to solr 2021-05-13 16:13:28 +02:00
Claudio Atzori 1517bf7c92 IndexRecordTransformerTest for producing a record that can be manually submitted to solr 2021-05-13 16:11:22 +02:00
Sandro La Bruzzo d9a0bbda7b implemented new phase in doiboost to make the dataset Distinct by ID 2021-05-13 12:25:14 +02:00
Sandro La Bruzzo 6424cd9062 Added passing of the following parameters: 
-varDataSourceId
-varOfficialName

in Each transformation Rule
 2021-05-11 15:17:38 +02:00
Sandro La Bruzzo 073dcea2aa Added passing of the following parameters: 
-varDataSourceId
-varOfficialName

in Each transformation Rule
 2021-05-11 15:05:58 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori da9d6f3887 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 10:45:30 +02:00
Sandro La Bruzzo 54217d73ff removed old parameters from oozie workflow 2021-05-11 09:59:02 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori 3797543600 MDStoreManager model classes moved in dhp-schemas 2021-05-10 14:32:05 +02:00
Claudio Atzori 25254885b9 [ActionManagement] reduced number of xqueries used to access ActionSet info 2021-05-07 17:32:03 +02:00
Claudio Atzori 8a0de2fc18 [ActionManagement] reduced number of xqueries used to access ActionSet info 2021-05-07 17:31:32 +02:00
Sandro La Bruzzo 7dc824fc23 imported changes in stable_id into master 2021-05-07 12:53:50 +02:00
Michele Artini d82071ba6c originalId with prefix 2021-05-06 15:34:48 +02:00
Claudio Atzori d4a30fabe3 clean up tests 2021-05-05 17:28:15 +02:00
Claudio Atzori dccaf173cf fixed mapping applied to ODF records. Added unit test to verify the mapping for OpenTrials 2021-05-05 16:36:15 +02:00
Claudio Atzori 8c96a82a03 fixed mapping applied to ODF records. Added unit test to verify the mapping for OpenTrials 2021-05-05 15:30:06 +02:00
Claudio Atzori 2e1eb96f9a code formatting 2021-05-05 11:23:57 +02:00
Sandro La Bruzzo 1adfc41d23 merged manually changes on stable_id for doiboost into master 2021-05-05 10:23:32 +02:00
Claudio Atzori fb930b84d3 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-05-04 18:06:30 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Sandro La Bruzzo 714b71bd21 updated pubmed 2021-05-04 14:54:12 +02:00
Claudio Atzori ba86835951 using common constants from ModelConstants 2021-05-04 11:51:52 +02:00
Michele Artini f4bd2b5619 recert file SparkDedupTest.java 2021-05-04 10:26:14 +02:00
Michele Artini b4877da363 Merge branch 'stable_ids' into prepare_ror_actionset 2021-05-03 08:13:55 +02:00
Alessia Bardi 9a20057615 fixed query for organisations' pids 2021-04-29 15:23:39 +02:00
Michele Artini 6692128234 Merge branch 'stable_ids' into prepare_ror_actionset 2021-04-29 13:24:08 +02:00
Alessia Bardi a801999e75 fixed query for organisations' pids 2021-04-29 12:18:42 +02:00
Michele Artini a278d67175 parse input file 2021-04-29 11:34:47 +02:00
Claudio Atzori f6ccd54d87 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-04-29 10:10:01 +02:00
Claudio Atzori 91e7220f20 cleaned up workflow for actionset migration, adjusted dnet|cnr* dependency versions 2021-04-29 10:09:52 +02:00
Michele Artini f77ba34126 pid types 2021-04-29 09:50:05 +02:00
Michele Artini 7c5cd86927 annotations and tests 2021-04-29 09:29:19 +02:00
Michele Artini b5cf505cc6 partial implementation of the ROR->actionset workflow 2021-04-28 16:00:24 +02:00
Enrico Ottonello c537986b7c deleted folders with merged data immediately before merge phases 2021-04-28 11:25:25 +02:00
Sandro La Bruzzo 2129e9caa7 updated pangaea transformation to parse directly the xml 2021-04-28 10:21:03 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Alessia Bardi e6075bb917 updated json schema for results - added instances and accessright definition 2021-04-27 15:15:08 +02:00
Sandro La Bruzzo 63c0303137 removed unused import, add log 2021-04-27 12:17:23 +02:00
Sandro La Bruzzo 74484d2823 bug fixing 2021-04-27 12:13:44 +02:00
Sandro La Bruzzo c74b03d59c Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_ids 2021-04-27 11:31:07 +02:00
Sandro La Bruzzo 7f8848ecdd added first implementation of Pangaea Mapping 2021-04-27 11:30:37 +02:00
Claudio Atzori 27ab8a704d adjusted poms to align with the external dhp-schema module 2021-04-27 10:12:27 +02:00
Claudio Atzori a7cf449b36 cleanup 2021-04-27 10:11:26 +02:00
Claudio Atzori fa42026590 fixed PersonCleaner extension functions 2021-04-27 10:10:06 +02:00
Claudio Atzori ef4bfd82e2 code formatting 2021-04-27 10:09:31 +02:00
Claudio Atzori faa8f6f4e2 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-04-27 09:57:03 +02:00
miconis 6d5c14e030 assertions updated in entity merger test 2021-04-27 09:47:49 +02:00
Claudio Atzori c2bb03c8b5 depending on external dhp-schemas module 2021-04-23 17:57:35 +02:00
Claudio Atzori 7ed107be53 depending on external dhp-schemas module 2021-04-23 17:52:36 +02:00
Claudio Atzori c25238480c making ODF record parsing namespace unaware (#6629) 2021-04-23 17:34:57 +02:00
Claudio Atzori 99cfb027fa making ODF record parsing namespace unaware (#6629) 2021-04-23 17:09:36 +02:00
Miriam Baglioni 72e5aa3b42 refactoring 2021-04-23 12:10:30 +02:00
Miriam Baglioni 7d1b8b7f64 merge upstream 2021-04-23 11:55:49 +02:00
miconis d0e3366c34 Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_ids 2021-04-22 11:45:19 +02:00
miconis 3c12eeadce bug fix in propagation of relations 2021-04-22 11:44:33 +02:00
Claudio Atzori e5abbec2ba [orcid] download of the lambda file defined in a script 2021-04-22 11:22:10 +02:00
Claudio Atzori 55964cbd81 [orcid] large oozie workflow cleanup; updated workflow for the orcidnodoi actionset creation 2021-04-22 10:18:09 +02:00
Claudio Atzori 8f309b72ff [dedup] using node names consistently across the workflow 2021-04-21 17:54:51 +02:00
Claudio Atzori 52244f813a merging from enrico.ottonello/dnet-hadoop:orcid-no-doi 2021-04-21 12:24:09 +02:00
Sandro La Bruzzo fd29307b84 updated workflow name 2021-04-21 09:21:41 +02:00
Claudio Atzori 815b9f4d56 [openorgs dedup] fixed workflow parameter declarations. Introduced support for resuming the execution from intermediate steps 2021-04-20 17:24:45 +02:00
Claudio Atzori d0d477cca3 code formatting 2021-04-20 12:50:34 +02:00
miconis 0393cdce42 addition of alternative names in export queries 2021-04-20 12:45:21 +02:00
miconis cadd0a5de8 modification of the queries for openorgs: they now consider also pending orgs 2021-04-20 12:06:56 +02:00
Sandro La Bruzzo e06c7f32f6 updated id figshare as described in #6377 2021-04-20 10:18:07 +02:00
Sandro La Bruzzo dbe0d0378e resolved ticket #6377 2021-04-20 09:44:44 +02:00
Sandro La Bruzzo 524e5f3092 Improved parallelization on transformation wf on hadoop 2021-04-19 15:17:25 +02:00