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4658 Commits

Author SHA1 Message Date
Giambattista Bloisi e64c2854a3 Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface 
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
 2023-07-24 15:36:24 +02:00
Giambattista Bloisi bb5b845e3c Use scala.binary.version property to resolve scala maven dependencies 
Ensure consistent usage of maven properties
Profile for compiling with scala 2.12 and Spark 3.4
 2023-07-24 11:13:48 +02:00
Claudio Atzori 002b24e06f Merge pull request '[graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests' (#315) from pid_cleaning into beta 
Reviewed-on: D-Net/dnet-hadoop#315
 2023-07-24 10:49:44 +02:00
Claudio Atzori c754397a19 Merge branch 'beta' into pid_cleaning 2023-07-24 10:49:31 +02:00
Claudio Atzori f0678cda09 Merge pull request 'fix_beta_tests' (#323) from fix_beta_tests into beta 
Reviewed-on: D-Net/dnet-hadoop#323
 2023-07-24 10:47:35 +02:00
Serafeim Chatzopoulos 3a0f09774a Add script to find score limits 2023-07-21 17:55:41 +03:00
Ilias Kanellos 06b9b71c4e Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 17:42:49 +03:00
Ilias Kanellos 2374f445a9 Produce additional bip update specific files 2023-07-21 17:42:46 +03:00
Serafeim Chatzopoulos cb0f3c50f6 Format workflow.xml 2023-07-21 16:07:10 +03:00
Serafeim Chatzopoulos c64e5e588f Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 15:27:02 +03:00
Serafeim Chatzopoulos 2cc5b1a39b Fixes in workflow.xml 2023-07-21 15:26:50 +03:00
Ilias Kanellos 0f96af5d56 Merge branch '8172_impact_indicators_workflow' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8172_impact_indicators_workflow 2023-07-21 13:42:35 +03:00
Ilias Kanellos 03da965162 Format bip-score based file without doi references 2023-07-21 13:42:30 +03:00
Giambattista Bloisi f03153823a Update testCitationRelations number of expected citations according to changes made in 0559d8b4 (monodirectional citations) 2023-07-21 10:48:28 +02:00
Giambattista Bloisi 54c1eacef1 SparkJobTest was failing because testing workingdir was not cleaned up after eact test 2023-07-21 10:42:24 +02:00
Giambattista Bloisi 5e15f20e6e Fix entityMerger that was excluding the authors of the first entity in the list to merge 2023-07-21 00:46:54 +02:00
Giambattista Bloisi 0210a14e43 Ignore timestamp differences in PromoteActionPayloadForGraphTableJobTest 2023-07-20 23:45:57 +02:00
Giambattista Bloisi dba34505de Fix SparkStatsTest bug where parquet tables were incorrectly read as text files leading to unpredictable count() values 2023-07-19 14:24:52 +02:00
Giambattista Bloisi e47ed1fdb2 Use DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES in json mapper to avoid that tests fail if they encounter unmapped properties 2023-07-19 14:21:40 +02:00
Giambattista Bloisi 38dfebfbe6 Disable MdStoreClientTest test as it requires a local mongodb running and it does not perform any assertions 2023-07-19 14:18:56 +02:00
Serafeim Chatzopoulos db4ca43ee8 Resolve conflict 2023-07-18 18:38:26 +03:00
Serafeim Chatzopoulos be320ba3c1 Indentation fixes 2023-07-17 16:04:21 +03:00
Serafeim Chatzopoulos bc1a4611aa Minor changes 2023-07-17 11:17:53 +03:00
dimitrispie 76901a25f9 Updates Promotion DBs 
- Add a step for promoting the splitted monitor DBs
 2023-07-12 22:49:08 +03:00
Giambattista Bloisi ef493681d9 Merge pull request 'Import dnet-pace-core module in this project and use it after renaming to dhp-pace-core' (#319) from beta_with_pace_core into beta 
Reviewed-on: D-Net/dnet-hadoop#319
 2023-07-11 14:03:15 +02:00
Serafeim Chatzopoulos 4eba14a80e Add oozie workflow 2023-07-06 21:07:50 +03:00
Serafeim Chatzopoulos c2998a14e8 Add basic tests for affiliation relations 2023-07-06 20:28:16 +03:00
Serafeim Chatzopoulos bc7b00bcd1 Add bi-directional affiliation relations 2023-07-06 18:29:15 +03:00
Serafeim Chatzopoulos 12528ed2ef Refactor PrepareAffiliationRelations.java to use OafMapperUtils common functions 2023-07-06 18:08:33 +03:00
Serafeim Chatzopoulos bbc245696e Prepare actionsets for BIP affiliations 2023-07-06 15:56:12 +03:00
Ilias Kanellos 0c433eccdd Fix scores & Workflow 2023-07-06 15:06:28 +03:00
Ilias Kanellos d5c39a1059 Fix map scores to doi 2023-07-06 15:04:48 +03:00
Ilias Kanellos 772d5f0aab Make PR and AttRank serial 2023-07-06 13:47:51 +03:00
Giambattista Bloisi 801da2fd4a New sources formatted by maven plugin 2023-07-06 10:28:53 +02:00
Giambattista Bloisi bd3fcf869a rename dnet-pace-core into dhp-pace-core module and use it as dependency in other modules 2023-07-06 10:02:23 +02:00
Serafeim Chatzopoulos 347a889b20 Read affiliation relations 2023-07-06 00:51:01 +03:00
Giambattista Bloisi 3b35db5fbd Import dnet-pace-core module from dnet-dedup repository 2023-07-05 22:23:06 +02:00
Miriam Baglioni 7738372125 [UsageCount] fixed typo in attribute name for datasource table 2023-06-30 18:56:41 +02:00
Sandro La Bruzzo 9963fd6d29 updated log to add subentity 2023-06-28 13:36:05 +02:00
Sandro La Bruzzo ed7e2ab6d1 reverted mistake on commit workflow.xml 2023-06-28 11:40:19 +02:00
Sandro La Bruzzo 9910ce06ae added to CreateSimRel the feature to write time log 2023-06-28 11:38:16 +02:00
Miriam Baglioni 2717edafb7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-06-28 11:25:14 +02:00
Miriam Baglioni 2f04c9d149 [BulkTagging] fixing left over for test 2023-06-28 11:24:42 +02:00
Sandro La Bruzzo bd17c3edc8 added to CreateSimRel the feature to write time log 2023-06-28 11:20:58 +02:00
Sandro La Bruzzo b195da3a83 Added utility to write time logs during the deduplication phase 2023-06-28 11:20:09 +02:00
Claudio Atzori 0f5a819f44 [graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests 2023-06-23 16:10:49 +02:00
Serafeim Chatzopoulos 60f25b780d Minor fixes in workflow.xml and job.properties 2023-06-23 12:51:50 +03:00
Michele Artini 88a1cbc37d fixed a datasource id 2023-06-22 07:56:33 +02:00
Claudio Atzori b0ebf56367 Merge pull request 'Update step15_5.sql' (#314) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#314
 2023-06-21 10:33:22 +02:00
dimitrispie 2b6370eaee Update step15_5.sql 
Bug fix
 2023-06-21 11:31:10 +03:00