Claudio Atzori
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58467aaf1e
|
WIP: transformation workflow error reporting
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2021-02-17 16:14:41 +01:00 |
Claudio Atzori
|
cc88701f29
|
retry for any Socket exception
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2021-02-17 16:13:54 +01:00 |
Claudio Atzori
|
545f8f3e48
|
using jackson objectmapper instead of GSon to serialise the aggregation report
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2021-02-17 12:15:00 +01:00 |
Claudio Atzori
|
b592d78bb4
|
WIP: collectorWorker error reporting, generalised reported implementation
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2021-02-17 10:28:01 +01:00 |
Claudio Atzori
|
cf27905a71
|
WIP: collectorWorker error reporting, added report messages
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2021-02-16 16:53:14 +01:00 |
Claudio Atzori
|
1abe6d1ad7
|
WIP: collectorWorker error reporting, added report messages
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2021-02-15 15:08:59 +01:00 |
Claudio Atzori
|
523a6bfa97
|
Merge pull request 'first commit to the correct branch' (#94) from andreas.czerniak/BrAggr_dnet-hadoop:hadoop_aggregator into hadoop_aggregator
Looks good to me, thanks Andreas!
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2021-02-15 12:15:31 +01:00 |
Sandro La Bruzzo
|
7edcc87ed4
|
changed xslt behaviour on failure
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2021-02-12 17:27:08 +01:00 |
Sandro La Bruzzo
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b3f5c2351d
|
Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into hadoop_aggregator
Conflicts:
dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/transformation/TransformationJobTest.java
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2021-02-12 16:37:14 +01:00 |
Sandro La Bruzzo
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f216277219
|
Implemented cleaning date
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2021-02-12 16:34:52 +01:00 |
Andreas Czerniak
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5a9017cf18
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clone, min. changes, test, run
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2021-02-12 14:32:36 +01:00 |
Claudio Atzori
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aa55dedb8a
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Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator
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2021-02-12 12:31:05 +01:00 |
Claudio Atzori
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29c6f7e255
|
classes related to the collection workflow moved into common package; implemented MongoDB collection plugins
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2021-02-12 12:31:02 +01:00 |
Sandro La Bruzzo
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17e6f1934e
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fixed NPE on cleaner
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2021-02-12 11:48:11 +01:00 |
Sandro La Bruzzo
|
ebcc3ec14f
|
updated wrong datacite identifier in trasformation
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2021-02-11 16:25:51 +01:00 |
Claudio Atzori
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bae029f828
|
collection_java_xmx allows to declare the heap size allocated for the java actions involved in the metadata collectionw workflow
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2021-02-08 18:07:23 +01:00 |
Claudio Atzori
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bebc54d5bf
|
seq file storing native records is now compressed
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2021-02-08 18:06:25 +01:00 |
Claudio Atzori
|
50add4c61b
|
added requestDelay to HttpConnector2 configuration; Aggregation workflow constants moved in dhp-common
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2021-02-08 12:19:38 +01:00 |
Claudio Atzori
|
40df0f987d
|
better logging, WIP: collectorWorker error reporting; common functions moved in DHPUtils
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2021-02-06 20:12:00 +01:00 |
Claudio Atzori
|
a8a758925e
|
better logging, WIP: collectorWorker error reporting
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2021-02-05 19:18:05 +01:00 |
Claudio Atzori
|
730973679a
|
Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator
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2021-02-04 17:25:00 +01:00 |
Claudio Atzori
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deb85706db
|
imported HttpConnector from https://svn.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-modular-collector-service/trunk/src/main/java/eu/dnetlib/data/collector/plugins/HttpConnector.java as HttpConnector2
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2021-02-04 17:24:52 +01:00 |
Sandro La Bruzzo
|
4dae5e605d
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implemented messaging btween collection worker and Dnet
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2021-02-04 15:51:15 +01:00 |
Claudio Atzori
|
40764cf626
|
better logging, WIP: collectorWorker error reporting
|
2021-02-04 14:06:02 +01:00 |
Claudio Atzori
|
e04045089f
|
better logging, WIP: collectorWorker error reporting
|
2021-02-03 17:58:22 +01:00 |
Claudio Atzori
|
0e8a4f9f1a
|
better logging, WIP: collectorWorker error reporting
|
2021-02-03 12:33:41 +01:00 |
Claudio Atzori
|
ac46c247d2
|
code formatting
|
2021-02-02 14:24:00 +01:00 |
Claudio Atzori
|
bde14b149a
|
fixed transformation target paths
|
2021-02-02 12:49:29 +01:00 |
Claudio Atzori
|
ca4391aa1c
|
minor changes
|
2021-02-02 12:44:04 +01:00 |
Claudio Atzori
|
bb89b99b24
|
code formatting
|
2021-02-02 12:34:14 +01:00 |
Claudio Atzori
|
75807ea5ae
|
factored out constants
|
2021-02-02 12:28:21 +01:00 |
Sandro La Bruzzo
|
0634674add
|
implemented transformation test
|
2021-02-02 12:12:14 +01:00 |
Claudio Atzori
|
8eaa1fd4b4
|
WIP: metadata collection in INCREMENTAL mode and relative test
|
2021-02-01 19:29:10 +01:00 |
Sandro La Bruzzo
|
bead34d11a
|
code refactor
|
2021-02-01 14:58:06 +01:00 |
Sandro La Bruzzo
|
6ff234d81b
|
Implemented a first prototype of incremental harvesting and trasformation using readlock
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2021-02-01 13:56:05 +01:00 |
Sandro La Bruzzo
|
b6b835ef49
|
update transformation Factory to get Transformation Rule by Id and not by Title
|
2021-02-01 08:49:42 +01:00 |
Sandro La Bruzzo
|
8ee82576c6
|
Collection on Refresh WORKS!!!
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2021-01-29 17:02:46 +01:00 |
Sandro La Bruzzo
|
0276180039
|
WIP mdstore
transaction implemented on hadoop side
|
2021-01-29 16:42:41 +01:00 |
Sandro La Bruzzo
|
0f8e2ecce6
|
Merged Datacite transfrom into this branch
|
2021-01-29 10:45:07 +01:00 |
Sandro La Bruzzo
|
99cf3a8ea4
|
Merged Datacite transfrom into this branch
|
2021-01-28 16:34:46 +01:00 |
Sandro La Bruzzo
|
98b9498b57
|
Removed old messaging system not quite used from collection and Transformation workflow
code refactor
|
2021-01-28 09:51:17 +01:00 |
Sandro La Bruzzo
|
184e7b3856
|
Implemented new Transformation using spark
|
2021-01-27 15:43:08 +01:00 |
Sandro La Bruzzo
|
ffb092b8d3
|
removed duplicate code HttpConnector.java
|
2021-01-25 15:05:37 +01:00 |
Claudio Atzori
|
2a7a10809e
|
[BIP! Scores integration] merged missing classes from bipFinder branch
|
2021-01-11 10:05:02 +01:00 |
Claudio Atzori
|
d6686dd7cf
|
merged from master
|
2021-01-08 18:16:12 +01:00 |
Claudio Atzori
|
34229970e6
|
[BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation
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2021-01-08 16:29:17 +01:00 |
Claudio Atzori
|
1361c9eb0c
|
[BIP! Scores integration] Create updates as Result rather than subclasses; Result considers also metrics in the mergeFrom operation
|
2021-01-07 10:07:30 +01:00 |
Claudio Atzori
|
2e503ee101
|
code formatting
|
2020-12-17 13:47:38 +01:00 |
Claudio Atzori
|
03319d3bd9
|
Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master"
This reverts commit add7e1693b , reversing
changes made to f9a8fd8bbd .
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2020-12-17 12:23:58 +01:00 |
Miriam Baglioni
|
888175baf7
|
added java doc
|
2020-12-01 18:36:29 +01:00 |
Miriam Baglioni
|
17680296b9
|
removed unnecessary variable and unused method
|
2020-12-01 15:02:31 +01:00 |
Miriam Baglioni
|
5b3ed70808
|
refactoring
|
2020-12-01 14:31:34 +01:00 |
Miriam Baglioni
|
45d06c45c7
|
collecting all the atoic actions for result type and save them all in the AS path
|
2020-12-01 14:29:18 +01:00 |
Miriam Baglioni
|
db36e11912
|
classes test classes and resources for production of the actionset to include bipFinder score in results
|
2020-11-30 20:14:23 +01:00 |
Miriam Baglioni
|
a2ce527fae
|
changed to match the requirements for short titles in level and long titles in classification
|
2020-10-20 17:03:25 +02:00 |
Claudio Atzori
|
5f7b75f5c5
|
code formatting
|
2020-10-07 13:22:54 +02:00 |
Miriam Baglioni
|
061527f06e
|
adding short description
|
2020-10-05 13:54:39 +02:00 |
Miriam Baglioni
|
0c12d7bdd8
|
adding short description
|
2020-10-05 11:39:55 +02:00 |
Miriam Baglioni
|
fc2f7636be
|
removed not used code
|
2020-10-02 12:33:52 +02:00 |
Miriam Baglioni
|
4aec347351
|
refactoring
|
2020-10-01 16:23:52 +02:00 |
Miriam Baglioni
|
61946b4092
|
refactoring
|
2020-10-01 16:22:48 +02:00 |
Miriam Baglioni
|
3a374c34b6
|
fixed null pointer exception
|
2020-10-01 15:41:01 +02:00 |
Miriam Baglioni
|
6e5db85b32
|
-
|
2020-10-01 11:51:11 +02:00 |
Miriam Baglioni
|
b90bee124b
|
removing raws that are empy from thos imported
|
2020-10-01 11:16:49 +02:00 |
Miriam Baglioni
|
416bda6066
|
changed the programme.desxcription by using the same value used in the classification instead of the short title or the title
|
2020-10-01 10:31:33 +02:00 |
Miriam Baglioni
|
f6587c91f3
|
added comparison to a char that seems - but it is not
|
2020-10-01 10:30:26 +02:00 |
Miriam Baglioni
|
7e73bb88b3
|
changed the logic to add the topic description to the project
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2020-09-28 17:21:43 +02:00 |
Miriam Baglioni
|
0a035e3630
|
-
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2020-09-28 17:20:49 +02:00 |
Miriam Baglioni
|
16bee2084d
|
added the topic code to the project subset
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2020-09-28 17:20:11 +02:00 |
Miriam Baglioni
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c2abde4d9f
|
changed the implementation of Atomic Actions creation by exploiting the topic information get from the cordis excel file
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2020-09-28 12:16:34 +02:00 |
Miriam Baglioni
|
d930b8d3fc
|
changed the query to get only the code of the project and not the optional1 (topic code) and optional2 (topic description)
|
2020-09-28 12:15:48 +02:00 |
Miriam Baglioni
|
f8f5cfd5cc
|
removed the part added to set the topic code and description in the step of project preparation
|
2020-09-28 12:13:33 +02:00 |
Miriam Baglioni
|
9e19c9a221
|
remove the topic description from the values in the CSVProject class
|
2020-09-28 12:11:03 +02:00 |
Miriam Baglioni
|
6d8b932e40
|
refactoring
|
2020-09-28 12:06:56 +02:00 |
Miriam Baglioni
|
b77f166549
|
changed the package name from csvutils to utils
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2020-09-28 12:05:47 +02:00 |
Miriam Baglioni
|
f4739a371a
|
code to get the information related to the topic association between code and description.
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2020-09-28 12:02:48 +02:00 |
Miriam Baglioni
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969fa8d96e
|
fixed issue and changed the transformation of the programme file to consider the new model
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2020-09-25 13:32:34 +02:00 |
Miriam Baglioni
|
9f54f69e6d
|
added topic information
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2020-09-24 15:23:35 +02:00 |
Miriam Baglioni
|
d6206d6e63
|
add the topic description to the action set associated to the project
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2020-09-24 15:22:40 +02:00 |
Miriam Baglioni
|
6b50226f3b
|
added topic code and topic description
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2020-09-24 15:21:49 +02:00 |
Miriam Baglioni
|
15af1f527e
|
modified to consider the topic information
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2020-09-24 15:20:56 +02:00 |
Miriam Baglioni
|
609ff17cfc
|
now the commission give us the framework programme (FP7 - H2020) so use this information to filter out programmes not associated to H2020
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2020-09-24 15:19:31 +02:00 |
Miriam Baglioni
|
b66f930466
|
Added optionl1 and optional2 information to the files red from the db. Optional1 contains the topic code and optional2 contains the topic description
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2020-09-24 15:16:56 +02:00 |
Miriam Baglioni
|
860e6d38a6
|
added topic description to the CSV project variables
|
2020-09-24 15:15:26 +02:00 |
Miriam Baglioni
|
2cba3cb484
|
modification to the classes building the actionset to consider the h2020classification
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2020-09-23 17:31:15 +02:00 |
Claudio Atzori
|
306669209f
|
code formatting
|
2020-06-16 16:54:44 +02:00 |
Miriam Baglioni
|
6f1eea28b6
|
changed message in log
|
2020-05-29 10:41:39 +02:00 |
Miriam Baglioni
|
01f7876595
|
fix issue with flatMap - the return type must not be null
|
2020-05-28 23:50:32 +02:00 |
Miriam Baglioni
|
5309a99a70
|
modified the PrepareProjects to consider those in the db
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2020-05-28 17:29:53 +02:00 |
Miriam Baglioni
|
b737ed8236
|
added part to read projects from the openaire db to filter out those in the csv file that are not in the db
|
2020-05-28 17:29:21 +02:00 |
Miriam Baglioni
|
df44db686a
|
refactoring
|
2020-05-28 10:07:00 +02:00 |
Miriam Baglioni
|
87b07f4af8
|
removed unused variables
|
2020-05-28 10:05:43 +02:00 |
Miriam Baglioni
|
96d1a3c431
|
deleted the file were to store the csv files
|
2020-05-28 10:04:10 +02:00 |
Miriam Baglioni
|
669c05c771
|
added groupBy before creating Actions
|
2020-05-28 10:00:45 +02:00 |
Miriam Baglioni
|
473c6d3a23
|
produces AtomicActions instead of Projects
|
2020-05-22 15:26:57 +02:00 |
Miriam Baglioni
|
4589c428b1
|
generate action sets and saves them in the hdfs path for the actions sets
|
2020-05-21 16:30:39 +02:00 |
Miriam Baglioni
|
75491482de
|
added a new preparation step to replicate each project for the programme it is associated to
|
2020-05-20 10:28:56 +02:00 |
Miriam Baglioni
|
9447d78ef3
|
added preparation classes
|
2020-05-19 18:42:50 +02:00 |
Miriam Baglioni
|
abc45f2708
|
added dnet-45 HttpConnector and related Classes, produced the POJO for projects and programme
|
2020-05-18 13:04:06 +02:00 |
Miriam Baglioni
|
22cb9e0da7
|
simple code to get file from URL
|
2020-05-15 18:18:01 +02:00 |