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1935 Commits

Author SHA1 Message Date
Sandro La Bruzzo b31dd126fb fixed crossref workflow added common ORCID Class 2020-12-07 10:42:38 +01:00
Claudio Atzori a104a632df cleanup 2020-12-04 16:32:47 +01:00
Claudio Atzori 5b4e1142a8 Merge pull request 'added last step to update cache' (#64) from antonis.lempesis/dnet-hadoop:master into master 
Looks good to me, thanks!
 2020-12-04 14:42:31 +01:00
Antonis Lempesis b1ed1afdcc added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-04 13:07:18 +02:00
Antonis Lempesis 7cb113e088 added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-04 13:04:25 +02:00
Antonis Lempesis d23ccae0d5 ignoring deletedbyinference relations 2020-12-04 12:42:17 +02:00
Miriam Baglioni 5fb65ffc4a merge branch with master 2020-12-03 11:24:35 +01:00
Miriam Baglioni ea88dc3401 fixed issue in property name 2020-12-03 11:24:23 +01:00
Miriam Baglioni 4c58bd1c93 merge with upstream 2020-12-03 11:24:00 +01:00
Miriam Baglioni 05c452f58d merge with upstream 2020-12-03 10:26:45 +01:00
Antonis Lempesis 413afcfed5 finished first implementation of wf 2020-12-02 15:57:17 +02:00
Antonis Lempesis 0948536614 initial implementation of the promote wf 2020-12-02 15:41:56 +02:00
Sandro La Bruzzo 7da679542f fixed wrong projectId 2020-12-02 14:28:09 +01:00
Sandro La Bruzzo 6ba8037cc7 fixed failure to test due to changing of input 2020-12-02 11:34:46 +01:00
Claudio Atzori cfb55effd9 code formatting 2020-12-02 11:23:49 +01:00
Claudio Atzori 74242e450e using constants from ModelConstants 2020-12-02 11:23:35 +01:00
Miriam Baglioni d5efa6963a using constants in ModelCOnstants 2020-12-02 11:20:26 +01:00
Miriam Baglioni cd285e98bc usoing the constants defined in the ModelConstants class 2020-12-02 11:13:23 +01:00
Miriam Baglioni 4b0d1530a2 merge upstream 2020-12-02 11:05:00 +01:00
Claudio Atzori faa977df7e Merge pull request 'orcid-no-doi' (#43) from enrico.ottonello/dnet-hadoop:orcid-no-doi into master 
The dataset was generated and is now part of the actionsets available in BETA
 2020-12-02 10:55:12 +01:00
Claudio Atzori 57f448b7a4 graph cleaning workflow separate orcid_pending from orcid, depending on the author pid provenance 2020-12-02 10:44:05 +01:00
Alessia Bardi 2d15667b4a testing XML generation from json object (case AMS ACTA) 2020-12-02 10:16:26 +01:00
Alessia Bardi a417624670 tests for raw graph mapping 2020-12-02 10:15:26 +01:00
Miriam Baglioni f8468c9c22 added extention for new author pid (orcid_pending) 2020-12-01 20:09:35 +01:00
Miriam Baglioni 888175baf7 added java doc 2020-12-01 18:36:29 +01:00
Miriam Baglioni 3d62d99d5d fixed issue in workflow variable 2020-12-01 15:02:49 +01:00
Miriam Baglioni 17680296b9 removed unnecessary variable and unused method 2020-12-01 15:02:31 +01:00
Miriam Baglioni 5b3ed70808 refactoring 2020-12-01 14:31:34 +01:00
Miriam Baglioni 62ff4999e3 added workflow and last step of collection and save 2020-12-01 14:30:56 +01:00
Miriam Baglioni 45d06c45c7 collecting all the atoic actions for result type and save them all in the AS path 2020-12-01 14:29:18 +01:00
Miriam Baglioni 0051ebede5 extending test 2020-12-01 12:43:03 +01:00
Miriam Baglioni 719da15f04 added test resources 2020-12-01 12:42:30 +01:00
Miriam Baglioni db36e11912 classes test classes and resources for production of the actionset to include bipFinder score in results 2020-11-30 20:14:23 +01:00
Enrico Ottonello f2df3ead74 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-30 14:22:46 +01:00
Enrico Ottonello 40c4559e92 added datainfo on authors pid with "sysimport:crosswalk:entityregistry", 2020-11-30 14:19:22 +01:00
Antonis Lempesis 815d6b25d9 added last step to update cache 2020-11-30 00:48:10 +02:00
Claudio Atzori e731a7658d cleaning texts to remove tab characters too 2020-11-27 09:00:04 +01:00
Claudio Atzori a104d2b6ad cleanup 2020-11-26 11:12:00 +01:00
Miriam Baglioni 124591a7f3 refactoring 2020-11-25 18:23:28 +01:00
Miriam Baglioni 1a89f8211c D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:12:40 +01:00
Miriam Baglioni 5fbe54ef54 D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:10:28 +01:00
Miriam Baglioni ed01e5a5e1 D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:09:34 +01:00
Miriam Baglioni d4ddde2ef2 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:01:01 +01:00
Miriam Baglioni f5e5e92a10 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 17:58:53 +01:00
Miriam Baglioni 1df94b85b4 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 17:57:43 +01:00
Claudio Atzori db0181b8af Merge pull request 'added bidirectionality to relations from project and result coming from crossref' (#60) from miriam.baglioni/dnet-hadoop:sxBidirectionality into master 2020-11-25 17:17:40 +01:00
Sandro La Bruzzo ec3e238de6 Fixed problem on duplicated identifier 2020-11-25 17:15:54 +01:00
Miriam Baglioni 90d4369fd2 added test to verify the compression in writing community info on hdfs 2020-11-25 14:34:58 +01:00
Miriam Baglioni 6750e33d69 merge branch with master 2020-11-25 14:09:01 +01:00
Miriam Baglioni b2c455f883 added java doc 2020-11-25 14:08:09 +01:00
Miriam Baglioni 1f130cdf92 changed the relation (produces -> isProducedBy) due to the change in the code 2020-11-25 14:04:26 +01:00
Miriam Baglioni e758d5d9b4 refactoring 2020-11-25 13:46:39 +01:00
Miriam Baglioni 87a9f616ae refactoring and addition of the funder nsp first part as nome for the dump insteasd of the whole nsp 2020-11-25 13:45:41 +01:00
Miriam Baglioni e7e418e444 added decision node to verify if to upload in Zenodo 2020-11-25 13:44:10 +01:00
Miriam Baglioni 305e3d0c9c added resource file for relation with relClass = isProducedBy 2020-11-25 13:43:41 +01:00
Miriam Baglioni 21ce175d17 added FilterFunction specification if filter operation 2020-11-25 13:42:31 +01:00
Miriam Baglioni bde6d337dd test classes for dump of results related to funders 2020-11-25 13:42:01 +01:00
Miriam Baglioni b37b9352d7 added constant value for semantic relationship between projects and results 2020-11-25 13:41:08 +01:00
Sandro La Bruzzo 264723ffd8 updated stuff for zenodo upload 2020-11-25 11:56:07 +01:00
Claudio Atzori eeebd5a920 Cleanig workflow: remove newlines from titles, descriptions, subjects 2020-11-24 18:40:25 +01:00
Enrico Ottonello 99a086f0c6 max concurrent executors set to 10, according to ORCID Director of Technology mail request 2020-11-24 17:49:32 +01:00
Miriam Baglioni 72bb0fe360 changed directory name 2020-11-24 16:47:07 +01:00
Miriam Baglioni 00874a8ce6 added bidirectionality to relations from project and result 2020-11-24 15:17:23 +01:00
Miriam Baglioni 39f4a20873 chenged the path and the name for saving the communities_infrastructures dump file 2020-11-24 14:47:32 +01:00
Miriam Baglioni 7e14452a87 final versione of the wf to get the dump of results associated to at least one funder per funder 2020-11-24 14:46:34 +01:00
Miriam Baglioni c167a18057 added new parameter for the dumpType 2020-11-24 14:45:50 +01:00
Miriam Baglioni 54a309bb6b refactoring 2020-11-24 14:45:30 +01:00
Miriam Baglioni 35ecea8842 changed to consider the modification for the specification of the type of dump 2020-11-24 14:45:15 +01:00
Miriam Baglioni b9b6bdb2e6 fixing issue on previous implementation 2020-11-24 14:44:53 +01:00
Miriam Baglioni 7e940f1991 changed to consider the modification for the specification of the type of dump 2020-11-24 14:43:34 +01:00
Miriam Baglioni 62928ef7a5 changed to save the communities_infrastructures information as the other entity dumps: in a json.gz file 2020-11-24 14:42:41 +01:00
Miriam Baglioni 3319440c53 changed the direction of the relation between projects and result considered to select the results linked to projects 2020-11-24 14:41:09 +01:00
Miriam Baglioni 00c377dac2 added specification of MapFunction types in map 2020-11-24 14:40:22 +01:00
Miriam Baglioni 44db258dc4 added enumerated for the dump type 2020-11-24 14:38:06 +01:00
Miriam Baglioni 1832708c42 modified boolean variable with string one whcih specify the type of dump we are performing: complete, community or funder 2020-11-24 14:37:36 +01:00
Enrico Ottonello 5c17e768b2 set wf configuration with spark.dynamicAllocation.maxExecutors 20 over 20 input partitions 2020-11-23 16:01:23 +01:00
Enrico Ottonello 5c9a727895 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-23 09:49:53 +01:00
Enrico Ottonello 97c8111847 action to convert lambda file in seq file; spark action to download updated authors 2020-11-23 09:49:22 +01:00
Miriam Baglioni 259c67ce36 fixed issue in path name 2020-11-20 12:32:23 +01:00
Miriam Baglioni 0a9db67eec - 2020-11-20 12:21:33 +01:00
Miriam Baglioni d362f2637d merge branch with master 2020-11-19 19:17:20 +01:00
Miriam Baglioni cf3f47563f new parameter files 2020-11-19 19:16:05 +01:00
Miriam Baglioni 24c56fa7a3 new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult. 2020-11-19 19:15:39 +01:00
Claudio Atzori d48f388fb2 Merge branch 'provision_indexing' 2020-11-19 15:59:55 +01:00
Claudio Atzori 46bde9c13f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-19 15:26:27 +01:00
Claudio Atzori 7c9feaf9e7 project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail 2020-11-19 15:26:20 +01:00
Michele Artini 293da47ad9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-19 10:42:31 +01:00
Michele Artini ab08d12c46 considering abstract > MIN_LENGTH in ENRICH_MISSING_ABSTRACT 2020-11-19 10:42:10 +01:00
Claudio Atzori e503271abe fixed notification workflow name 2020-11-19 10:41:38 +01:00
Claudio Atzori 0374d34c3e introduced configuration param outputFormat: HDFS | SOLR 2020-11-19 10:34:28 +01:00
Miriam Baglioni fafb688887 - 2020-11-18 18:56:48 +01:00
Miriam Baglioni 906db690d2 - 2020-11-18 17:43:08 +01:00
Claudio Atzori ede7fae6c8 Merge pull request 'XML record indexing test' (#58) from provision_indexing into master 2020-11-18 17:04:34 +01:00
Miriam Baglioni 5402062ff5 changed parameter file with the ono associated to the job 2020-11-18 16:58:20 +01:00
Miriam Baglioni a172a37ad1 fixed typo 2020-11-18 16:55:07 +01:00
Miriam Baglioni 46ba3793f6 code, workflow and parameters for the dump of the results associated to funders 2020-11-18 16:47:31 +01:00
Claudio Atzori 5218718e8b updated set of fields from the MDFormatDSResourceType on PROD 2020-11-18 15:00:41 +01:00
Claudio Atzori d9e07a242b extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location 2020-11-18 14:34:55 +01:00
Claudio Atzori 29dcff0f34 spark complains about missing classes, so here they are again 2020-11-18 14:32:32 +01:00
Miriam Baglioni 57cac36898 changed the workflow name 2020-11-18 13:38:03 +01:00
Claudio Atzori 12acf25519 Merge pull request 'starting from first step...' (#57) from antonis.lempesis/dnet-hadoop:master into master 
No judging. Just re-deploying...
 2020-11-18 11:01:49 +01:00
Claudio Atzori 8177ce7939 test for XmlIndexingJob based on a local miniSolrCluster 2020-11-18 10:58:05 +01:00
Alessia Bardi 10e673660f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-18 10:01:23 +01:00
Alessia Bardi be7b310cef rel semantcis ignore case 2020-11-18 10:01:20 +01:00
Michele Artini 33da2e3d6c xpaths for dateOfCollection and dateOfTransformation 2020-11-18 09:26:20 +01:00
Antonis Lempesis 01a6e03989 starting from first step... 2020-11-17 23:26:47 +02:00
Alessia Bardi 8f87020a50 #56: map relevantDates from aggregated ODF records 2020-11-17 18:42:09 +01:00
Alessia Bardi 7e0a76a8ac test fr TextGrid 2020-11-17 18:39:25 +01:00
Enrico Ottonello 2b0c9bbb7e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-17 18:24:34 +01:00
Enrico Ottonello c0c2e05eae added wf to extracting authors and works xml data from orcid dump to hdfs; added wf to download the lamda file (containing last orcid update informations) from orcid to hdfs 2020-11-17 18:23:12 +01:00
Claudio Atzori cfc01f136e PID filtering based on a blacklist 2020-11-17 12:27:06 +01:00
Dimitris bbcf6b7c8b Commit 17112020 2020-11-17 08:36:51 +02:00
Enrico Ottonello c796adae24 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-16 11:57:19 +01:00
Claudio Atzori 6ab1ce53c9 fixed condition in result pid cleaning; cleanup 2020-11-16 10:09:17 +01:00
Claudio Atzori 4de8c8b237 fixed workflow variable name 2020-11-16 10:03:11 +01:00
Dimitris 3e24c9b176 Changes 14112020 2020-11-14 18:42:07 +02:00
Claudio Atzori 331d621800 added test resource 2020-11-14 12:16:15 +01:00
Claudio Atzori 5d4e34e26a fixed typo in variable name 2020-11-14 10:32:26 +01:00
Claudio Atzori 768bc5304c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-13 15:40:34 +01:00
Claudio Atzori 93f7b7974f Merge pull request 'trust truncated to 3 decimals' (#24) from trunc_trust into master 
LGTM
 2020-11-13 15:40:02 +01:00
Claudio Atzori 528231a287 grouping graph entities by id turned out to be an easy extension for the already existing cleaning workflow 2020-11-13 15:37:48 +01:00
Enrico Ottonello 005f849674 added compression to output dataset 2020-11-13 12:45:31 +01:00
Enrico Ottonello 9a2fa9dc2f added test for other names parsing from summaries dump 2020-11-13 10:25:34 +01:00
Claudio Atzori 2bed29eb09 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:12 +01:00
Claudio Atzori 13e36a4da0 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:02 +01:00
Enrico Ottonello 13f28fa225 moved AuthorData to dhp-schemas; added other names to author data 2020-11-12 17:43:32 +01:00
Enrico Ottonello 2af21150c5 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-12 09:58:33 +01:00
Claudio Atzori 75324ae58a Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-12 09:23:37 +01:00
Claudio Atzori 822971f54f no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup; 2020-11-12 09:22:59 +01:00
Enrico Ottonello 1f861f2b0d now wf output is a sequence file with the format seq("eu.dnetlib.dhp.schema.oaf.Publication",eu.dnetlib.dhp.schema.action.AtomicActions) 2020-11-11 17:38:50 +01:00
Claudio Atzori 9841488482 Merge pull request 'latest changes in stats wf' (#54) from antonis.lempesis/dnet-hadoop:master into master 
LGTM, thanks!
 2020-11-11 16:01:51 +01:00
Antonis Lempesis 99ebaee347 fixed #5913 2020-11-11 16:56:46 +02:00
Claudio Atzori e3d3481fb9 Merge pull request 'organizations pids' (#53) from organization_pids into master 
LGTM
 2020-11-11 14:08:25 +01:00
Antonis Lempesis f14e65f6a3 reverted wrong change 2020-11-10 17:23:04 +02:00
Antonis Lempesis c02c7741c9 fixes in db creation 2020-11-10 17:11:30 +02:00
Antonis Lempesis e603fa5847 fixes in db creation 2020-11-10 17:11:12 +02:00
Enrico Ottonello fea2451658 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-10 11:49:43 +01:00
Claudio Atzori 18d9aad70c improved documentation in dhp-graph-provision 2020-11-10 11:48:55 +01:00
Enrico Ottonello 1513174d7e added further test case 2020-11-10 11:44:55 +01:00
Michele Artini 40160d171f organizations pids 2020-11-09 12:58:36 +01:00
Sandro La Bruzzo 027ef2326c Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-06 17:12:42 +01:00
Sandro La Bruzzo cd27df91a1 fixed bug on missing relation in ANDS 2020-11-06 17:12:31 +01:00
Enrico Ottonello 6bc7dbeca7 first version of dataset successful generated from orcid dump 2020 2020-11-06 13:47:50 +01:00
Claudio Atzori d10447e747 re-packaged graph dump workflow sources 2020-11-05 17:38:18 +01:00
Miriam Baglioni f8e9bda24c merge branch with master 2020-11-05 16:31:18 +01:00
Miriam Baglioni be5ed8f554 added check to avoid sending empty metadata. 2020-11-05 16:10:17 +01:00
Claudio Atzori 2148a51fae minor changes 2020-11-05 11:24:12 +01:00
Claudio Atzori 4625b7486e code formatting 2020-11-04 18:12:43 +01:00
Claudio Atzori f5f346dd2b Merge pull request 'dump' (#50) from miriam.baglioni/dnet-hadoop:dump into master 
LGTM
 2020-11-04 18:07:01 +01:00
Miriam Baglioni e9ac471ae9 removed dependency from classes for the pid graph dump 2020-11-04 18:04:42 +01:00