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124 Commits

Author SHA1 Message Date
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Claudio Atzori 1506f49052 Xml record serialization for author PIDs: 1) only one value per PID type is allowed; 2) orcid prevails over orcid_pending 2020-12-14 11:14:03 +01:00
Claudio Atzori 61cd129ded XML serialisation test 2020-12-11 12:44:53 +01:00
Claudio Atzori ce7a319e01 using the correct assertion import 2020-12-11 12:44:17 +01:00
Claudio Atzori 026ad40633 disabled test 2020-12-07 13:50:01 +01:00
Claudio Atzori cfb55effd9 code formatting 2020-12-02 11:23:49 +01:00
Alessia Bardi 2d15667b4a testing XML generation from json object (case AMS ACTA) 2020-12-02 10:16:26 +01:00
Claudio Atzori d48f388fb2 Merge branch 'provision_indexing' 2020-11-19 15:59:55 +01:00
Claudio Atzori 7c9feaf9e7 project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail 2020-11-19 15:26:20 +01:00
Claudio Atzori 0374d34c3e introduced configuration param outputFormat: HDFS | SOLR 2020-11-19 10:34:28 +01:00
Claudio Atzori 5218718e8b updated set of fields from the MDFormatDSResourceType on PROD 2020-11-18 15:00:41 +01:00
Claudio Atzori d9e07a242b extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location 2020-11-18 14:34:55 +01:00
Claudio Atzori 29dcff0f34 spark complains about missing classes, so here they are again 2020-11-18 14:32:32 +01:00
Claudio Atzori 8177ce7939 test for XmlIndexingJob based on a local miniSolrCluster 2020-11-18 10:58:05 +01:00
Claudio Atzori 2bed29eb09 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:12 +01:00
Claudio Atzori 822971f54f no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup; 2020-11-12 09:22:59 +01:00
Claudio Atzori 18d9aad70c improved documentation in dhp-graph-provision 2020-11-10 11:48:55 +01:00
Claudio Atzori 1871d1c6f6 solve error java.lang.NoSuchFieldError: INSTANCE when instantiating Solr client 2020-08-14 11:18:30 +02:00
Claudio Atzori 3a11a387a9 data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed 2020-08-03 14:28:08 +02:00
Claudio Atzori cc5d13da85 introduced parameter shouldIndex (true|false) 2020-07-16 13:46:39 +02:00
Claudio Atzori b098cc3cbe avoid repeating identical values for fields: source, description 2020-07-16 13:45:53 +02:00
Claudio Atzori 7d6e269b40 reverted CreateRelatedEntitiesJob_phase1 to its previous state 2020-07-13 22:54:04 +02:00
Claudio Atzori 8e97598eb4 avoid to NPE in case of null instances 2020-07-13 20:46:14 +02:00
Claudio Atzori 06c1913062 added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations 2020-07-10 19:03:33 +02:00
Claudio Atzori 4c3836f62e materialize the related entities before joining them 2020-07-10 19:00:44 +02:00
Claudio Atzori b21866a2da allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types 2020-07-10 13:59:48 +02:00
Claudio Atzori ff4d6214f1 experimenting with pruning of relations 2020-07-10 10:06:41 +02:00
Claudio Atzori b383ed42fa pass optional parameter relationFilter to the PrepareRelationJob implementation 2020-07-07 14:21:28 +02:00
Claudio Atzori d380b85246 unit test for the preparation of the relations 2020-07-02 12:42:13 +02:00
Claudio Atzori 7817338e05 added test to verify the relation pre-processing 2020-06-26 17:58:33 +02:00
Claudio Atzori 8d59fdf34e WIP: dataset based PrepareRelationsJob 2020-06-26 14:32:58 +02:00
Claudio Atzori 216975c4ec restored complete provision workflow 2020-06-25 12:55:52 +02:00
Claudio Atzori 93f627ea51 code formatting 2020-06-25 12:54:21 +02:00
Claudio Atzori e62333192c WIP: prepare relation job 2020-06-25 12:22:18 +02:00
Claudio Atzori 6933ec11fb WIP: prepare relation job 2020-06-25 11:04:12 +02:00
Sandro La Bruzzo a6c0faac70 added test to verify secondary sorting 2020-06-25 10:48:15 +02:00
Claudio Atzori 69b0391708 WIP: prepare relation job 2020-06-25 10:19:56 +02:00
Claudio Atzori 46e76affeb WIP: prepare relation job 2020-06-24 19:01:15 +02:00
Claudio Atzori 0e723d378b added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job 2020-06-24 18:34:42 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 4bcad1c9c3 Merge branch 'graph_cleaning' 2020-06-12 11:40:25 +02:00
Alessia Bardi e79943965b Fixes #5604: field oamandatepublications in XML 2020-06-11 12:49:31 +02:00
Claudio Atzori 67c7b31ba6 Merge branch 'master' into graph_cleaning 2020-06-10 15:00:35 +02:00
Claudio Atzori ce12f236bb disabled test, need to need to update the joined_entity.json file 2020-06-09 20:07:36 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Claudio Atzori 05f269a1c0 kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-06-01 00:32:42 +02:00
Claudio Atzori 6f5f498c78 restored common properties driving executor-cores and executor-memory in join_organization_relations wf node 2020-05-29 11:22:00 +02:00
Claudio Atzori b2f9564f13 WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-05-29 10:58:15 +02:00
Claudio Atzori a57965a3ea limiting the dimensions of outliers 2020-05-28 17:36:37 +02:00
Claudio Atzori 821be1f8b6 experimental implementation of custom aggregation using kryo encoders 2020-05-28 13:53:13 +02:00