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Author SHA1 Message Date
Miriam Baglioni b6da35e736 [IrishFunderList]make changed according to 9635 comment 14, 15 and 16 2024-06-19 11:06:58 +02:00
Lampros Smyrnaios 3c9b8de892 Miscellaneous updates to the copying operation to Impala Cluster: 
- Fix not breaking out of the VIEWS-infinite-loop when the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" is set to "false".
- Exit the script when no HDFS-active-node was found, independently of the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR".
- Fix view_name-recognition in a log-message, by using the more advanced "Perl-Compatible Regular Expressions" in "grep".
- Add error-handling for "compute stats" errors.
 2024-06-18 15:59:34 +02:00
Antonis Lempesis c67ef157d3 filtering out deletedbyinference and invinsible results from accessroute 2024-06-18 15:59:00 +02:00
Lampros Smyrnaios c23f3031ed Miscellaneous updates to the copying operation to Impala Cluster: 
- Show some counts and the elapsed time for various sub-tasks.
- Code polishing.
 2024-06-18 15:58:46 +02:00
Claudio Atzori 8ec151aa3d [graph indexing] comment out setting the JSON payload from the SolrInputDocuments 2024-06-18 15:53:24 +02:00
Lampros Smyrnaios 285416c74e Merge branch 'beta' into beta 2024-06-18 13:50:38 +02:00
Lampros Smyrnaios 3095047e5e Miscellaneous updates to the copying operation to Impala Cluster: 
- Fix not breaking out of the VIEWS-infinite-loop when the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" is set to "false".
- Exit the script when no HDFS-active-node was found, independently of the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR".
- Fix view_name-recognition in a log-message, by using the more advanced "Perl-Compatible Regular Expressions" in "grep".
- Add error-handling for "compute stats" errors.
 2024-06-18 14:40:41 +03:00
Antonis Lempesis 0456f1b788 Merge remote-tracking branch 'origin/beta' into beta 2024-06-14 15:11:30 +03:00
Antonis Lempesis 38636942c7 filtering out deletedbyinference and invinsible results from accessroute 2024-06-14 15:11:19 +03:00
Claudio Atzori 2636936162 [IE OAI-PMH] fixed oozie wf definition 2024-06-14 11:47:37 +02:00
Lampros Smyrnaios d942a1101b Miscellaneous updates to the copying operation to Impala Cluster: 
- Show some counts and the elapsed time for various sub-tasks.
- Code polishing.
 2024-06-14 12:14:38 +03:00
Miriam Baglioni ef437a8cdf [Provision]temporarily removed Json paylod from indexed records (Shadow cannot support it) 2024-06-13 16:48:03 +02:00
Giambattista Bloisi 9bf2bda1c6 Fix: next returned a null value at end of stream 2024-06-12 13:28:51 +02:00
Giambattista Bloisi d90cb099b8 Fix for paginationStart parameter management 2024-06-11 20:23:44 +02:00
Miriam Baglioni 86088ef26e Merge remote-tracking branch 'origin/beta_to_master_may2024' into beta_to_master_may2024 2024-06-11 17:04:07 +02:00
Miriam Baglioni 143c525343 [WebCrawl]remove relations for pid not doi 2024-06-11 17:03:59 +02:00
Giambattista Bloisi 4f2a61e10f Change the selection criteria for the pivot record of a group so that by best pid type becomes the first criteria. This will have the effect to slowly converge to records having DOI pid 2024-06-11 15:33:56 +02:00
Claudio Atzori 11fe3a4fe0 [graph resolution] use sparkExecutorMemory to define also the memoryOverhead 2024-06-11 14:21:17 +02:00
Claudio Atzori c371513d43 [graph resolution] use sparkExecutorMemory to define also the memoryOverhead 2024-06-11 14:21:01 +02:00
Miriam Baglioni 3efd5b1308 [SDGActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:35:57 +02:00
Miriam Baglioni 8fe934810f Merge remote-tracking branch 'origin/beta' into beta 2024-06-11 10:28:51 +02:00
Miriam Baglioni 9da006e98c [SDGFoSActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:28:32 +02:00
Miriam Baglioni 196fa55774 Merge remote-tracking branch 'origin/beta_to_master_may2024' into beta_to_master_may2024 2024-06-11 10:26:24 +02:00
Miriam Baglioni 50805e3fc1 [FoSActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:25:46 +02:00
Giambattista Bloisi 85c1eae7e0 Fixes for pagination strategy looping at end of download 2024-06-10 19:03:58 +02:00
Claudio Atzori b0eba210c0 [actionset promotion] use sparkExecutorMemory to define also the memoryOverhead 2024-06-10 16:15:24 +02:00
Claudio Atzori d39a1054b8 [actionset promotion] use sparkExecutorMemory to define also the memoryOverhead 2024-06-10 16:15:07 +02:00
Claudio Atzori 3776327a8c hostedby patching to work with the updated Crossref contents, resolved conflict 2024-06-10 15:24:12 +02:00
Claudio Atzori 576efc1857 hostedby patching to work with the updated Crossref contents 2024-06-10 15:22:33 +02:00
Claudio Atzori 0139f23d66 Merge pull request 'organization type from OpenOrgs' (#445) from import_openorg_type into beta 
Reviewed-on: D-Net/dnet-hadoop#445
 2024-06-07 12:17:31 +02:00
Michele Artini c726572418 changed some parameters in OSF test 2024-06-07 12:03:26 +02:00
Claudio Atzori ec79405cc9 [graph raw] set organization type from openorgs 2024-06-07 11:30:31 +02:00
Miriam Baglioni 1477406ecc [bulkTag] fixed issue that made project disappear in graph_10_enriched 2024-06-06 10:45:41 +02:00
Claudio Atzori 92c3abd5a4 [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-06-06 10:44:33 +02:00
Claudio Atzori ce2364743a applying changes from PR#442: Fix for missing collectedfrom after dedup 2024-06-06 10:43:43 +02:00
Claudio Atzori f70dc76b61 minor 2024-06-06 10:43:10 +02:00
Claudio Atzori efc1632e16 code formatting 2024-06-06 09:25:26 +02:00
Claudio Atzori 91b49366c6 [graph provision] align serialisation of the usage count measures to the agrred specifications 2024-06-05 16:34:40 +02:00
Claudio Atzori 5e05385d35 minor 2024-06-05 16:31:58 +02:00
Miriam Baglioni c4d9b5b9d2 [downloadsAndViews]update the test file to consider the new serialization for downloads and views 2024-06-05 16:30:15 +02:00
Miriam Baglioni bf9a5e6314 [downloadsAndViews]changed the test file to check the indicators are not there if their value is 0 2024-06-05 16:29:40 +02:00
Miriam Baglioni 9d79ddb3dd [bulkTag] fixed issue that made project disappear in graph_10_enriched 2024-06-05 16:20:40 +02:00
Miriam Baglioni 907aa28c6c [downloadsAndViews] fixed issue 2024-06-05 16:19:29 +02:00
Miriam Baglioni 3955ceaa76 [downloadsAndViews] changed the serialization for downloads and views 2024-06-05 16:18:46 +02:00
Miriam Baglioni 128c143394 {downloadsAndViews] extended test file with measures for downloads and views 2024-06-05 16:17:59 +02:00
Claudio Atzori 5133993ee5 Merge branch 'beta_to_master_may2024' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_to_master_may2024 2024-06-05 12:17:48 +02:00
Claudio Atzori 73bd1938a5 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:35 +02:00
Claudio Atzori 5cf259a851 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:16 +02:00
Claudio Atzori e1828fc60e Merge pull request '[PROD] Irish oaipmh exporter' (#444) from irish-oaipmh-exporter into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#444
 2024-06-05 10:56:20 +02:00
Claudio Atzori da5c1e73a4 Merge pull request 'Irish oaipmh exporter' (#443) from irish-oaipmh-exporter into beta 
Reviewed-on: D-Net/dnet-hadoop#443
 2024-06-05 10:55:09 +02:00
Claudio Atzori 81090ad593 [IE OAIPHM] added oozie workflow, minor changes, code formatting 2024-06-05 10:03:33 +02:00
Giambattista Bloisi 3feab5d92d Fix MergeUtils.mergeGroup: it could get rid of some records and did not consider all PID authorities whilke sorting records. 
ResultTypeComparator is now renamed in MergeEntitiesComparator and can be used as a general comparator for merging groups of records
 2024-06-03 15:13:40 +02:00
Claudio Atzori a02f3f0d2b code formatting 2024-05-30 10:21:18 +02:00
Alessia Bardi 05ee783c07 Merge branch 'beta' into dblp_collection_plugin 2024-05-29 16:04:39 +02:00
Claudio Atzori c272c4ad68 code formatting 2024-05-29 15:50:07 +02:00
Alessia Bardi c5f4da16a4 Merge branch 'beta' into rest-collector-request-header-map 2024-05-29 15:46:23 +02:00
Alessia 1b165a14a0 Rest collector plugin on hadoop supports a new param to pass request headers 2024-05-29 15:41:36 +02:00
Michele Artini e996787be2 OSF test 2024-05-29 15:05:17 +02:00
Claudio Atzori 6be783caec [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-05-29 14:36:49 +02:00
Claudio Atzori 62716141c5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster' (#440) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#440
 2024-05-29 14:34:51 +02:00
Claudio Atzori b703f94f09 Merge pull request 'changes in copy script - beta2master' (#439) from antonis.lempesis/dnet-hadoop:beta into beta_to_master_may2024 
Reviewed-on: D-Net/dnet-hadoop#439
 2024-05-29 14:29:26 +02:00
Miriam Baglioni 5d85b70e1f [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:55:00 +02:00
Miriam Baglioni 14f275ffaf [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:54:17 +02:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Claudio Atzori 8e45c5baa8 graph cleaning to implement ugly hardcoded rules 2024-05-28 15:28:42 +02:00
Claudio Atzori db5e18c784 hostedby patching to work with the updated Crossref contents 2024-05-28 15:28:13 +02:00
Miriam Baglioni 75d5ddb999 Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-27 12:01:28 +02:00
Miriam Baglioni 87c9c61b41 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-27 12:01:16 +02:00
Miriam Baglioni b55fed09f8 Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-27 12:01:01 +02:00
Claudio Atzori 107d958b89 [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-27 11:59:54 +02:00
Claudio Atzori 3a7a6ecc32 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:45 +02:00
Claudio Atzori 1af4224d3d [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-27 11:59:33 +02:00
Claudio Atzori 0d5bdb2db0 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-27 11:59:02 +02:00
Claudio Atzori 66548e6a83 Merge pull request 'changes in copy script' (#438) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#438
 2024-05-27 11:54:03 +02:00
Claudio Atzori fb266efbcb [org dedup] avoid NPEs in SparkPrepareNewOrgs 2024-05-26 21:23:30 +02:00
Claudio Atzori d7daf54333 [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 16:48:11 +02:00
Claudio Atzori f99eaa0376 Merge branch 'beta_to_master_may2024' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta_to_master_may2024 2024-05-26 15:45:41 +02:00
Claudio Atzori 23312fcc1e [org dedup] avoid NPEs in SparkPrepareOrgRels 2024-05-26 15:43:24 +02:00
Miriam Baglioni b864f0adcf Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-24 16:01:19 +02:00
Miriam Baglioni 7a44869d87 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-24 15:23:42 +02:00
Miriam Baglioni 12ffde023f Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-24 12:28:24 +02:00
Antonis Lempesis 15b54a345a added fos lvl4 2024-05-24 13:21:28 +03:00
Lampros Smyrnaios b48ed6e617 Change configuration in the copy-operation to Impala Cluster: 
Set the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" parameter to "false".
 2024-05-23 16:58:12 +03:00
Lampros Smyrnaios 68322843e2 Small updates to the copy-operation to Impala Cluster: 
- Add a configuration-"switch" to control whether the script exits upon an error or not.
- Allow the script to exit when a table could not be created.
- Show the elapsed time for processing each database.
 2024-05-23 15:07:49 +03:00
Lampros Smyrnaios c7b32bbacc Update CopyDataToImpalaCluster: 
Update the code of acquiring the entities from Ocean cluster, through hive, in order to optimize the process and account for additional reserved keywords in Impala.

Co-authored-by: Antonis Lempesis <antleb@di.uoa.gr>
 2024-05-23 13:00:19 +03:00
Sandro La Bruzzo f1fe363b19 merged again from beta (I hope for the last time) 2024-05-22 11:08:52 +02:00
Sandro La Bruzzo 66c1ffc866 merged again from beta (I hope for the last time) 2024-05-22 11:02:46 +02:00
Claudio Atzori c3fe59bc78 fixed conflicts merging from beta, code formatting 2024-05-21 14:50:40 +02:00
Claudio Atzori 1ea67eba82 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-05-21 13:48:48 +02:00
Claudio Atzori 834461ba26 [graph provision]fixed wf definition, revised serialization of the usage counts measures 2024-05-21 13:48:06 +02:00
Sandro La Bruzzo e8a61d5dd5 removed plugin, use only FileGZip plugin 2024-05-21 13:45:29 +02:00
Sandro La Bruzzo ca9414b737 Implement multiple node name splitter on GZipCollectorPlugin and all nodes that use XMLIterator. If the splitter name contains is a comma separated values it splits for all the values 2024-05-21 09:11:13 +02:00
Sandro La Bruzzo 032bcc8279 since last beta workflow we decide to introduce in the graph only MAG item with DOI and set them invisible ( this should be the same behaviour of the previous DOIBoost mapping). 
This commit apply this type of mapping
 2024-05-20 09:24:15 +02:00
Sandro La Bruzzo 103e2652b3 merged beta 2024-05-17 14:43:07 +02:00
Sandro La Bruzzo a87f9ea643 fixed scholexplorer bug 2024-05-17 14:16:43 +02:00
Sandro La Bruzzo 6efab4d88e fixed scholexplorer bug 2024-05-16 16:19:18 +02:00
Claudio Atzori 92f018d196 [graph provision] fixed path pointing to an intermediate data store in the working directory 2024-05-15 15:39:18 +02:00
Claudio Atzori 0611c81a2f [graph provision] using Qualifier.classNames to populate the correponsing fields in the JSON payload 2024-05-15 15:33:10 +02:00
Michele Artini 2b3b5fe9a1 oai finalization and test 2024-05-15 14:13:16 +02:00
Claudio Atzori 1efe7f7e39 [graph provision] upgrade to dhp-schema:6.1.2, included project.oamandatepublications in the JSON payload mapping, fixed serialisation of the usageCounts measures 2024-05-14 12:39:31 +02:00
Claudio Atzori f7d56e2ef2 Merge branch 'beta' into rest-collector-plugin-with-retry 2024-05-10 09:02:21 +02:00
Claudio Atzori dc3a5858f7 Merge branch 'beta' into beta_provision_relation 2024-05-09 14:14:43 +02:00
Claudio Atzori 55f39f7850 [graph provision] adds the possibility to validate the XML records before storing them via the validateXML parameter 2024-05-09 14:06:04 +02:00
Claudio Atzori 39a2afe8b5 [graph provision] fixed XML serialization of the usage counts measures, renamed workflow actions to better reflect their role 2024-05-09 13:54:42 +02:00
Claudio Atzori 908ed9da7a Merge pull request 'Various fixes in the stats wf' (#430) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#430
 2024-05-08 13:41:02 +02:00
Antonis Lempesis 0cada3cc8f every step is run in the analytics queue. Hardcoded for now, will make a parameter later 2024-05-08 13:42:53 +03:00
Antonis Lempesis 90a4fb3547 fixed typos 2024-05-08 13:17:58 +03:00
Claudio Atzori 18aa323ee9 cleanup unused classes, adjustments in the oozie wf definition 2024-05-08 11:36:46 +02:00
Michele Artini c9a327bc50 refactoring of gzip method 2024-05-08 11:34:08 +02:00
Michele Artini e234848af8 oaf record: xpath for root 2024-05-08 10:00:53 +02:00
Claudio Atzori b4e3389432 fixed property mapping creating the RelatedEntity transient objects. spark cores & memory adjustments. Code formatting 2024-05-07 16:25:17 +02:00
Giambattista Bloisi 711048ceed PrepareRelationsJob rewritten to use Spark Dataframe API and Windowing functions 2024-05-07 15:44:33 +02:00
Michele Artini 70bf6ac415 oai exporter tests 2024-05-07 09:36:26 +02:00
Michele Artini aa40e53c19 oai exporter parameters 2024-05-07 08:01:19 +02:00
Michele Artini ed052a3476 job for the population of the oai database 2024-05-06 16:08:33 +02:00
Claudio Atzori 26363060ed fixed id prefix creation for the fosnodoi records, again 2024-05-03 15:53:52 +02:00
Claudio Atzori 0486227185 [cleaning] deactivating the cleaning of FOS subjects found in the metadata provided by repositories 2024-05-03 14:31:12 +02:00
Claudio Atzori e1a0fb8933 fixed id prefix creation for the fosnodoi records 2024-05-03 14:14:18 +02:00
Sandro La Bruzzo 26bf8e763a merged from beta 2024-05-02 15:20:23 +02:00
Sandro La Bruzzo 0646d0d064 Updated main sparkApplication to avoid to require master variable 2024-05-02 15:15:03 +02:00
Claudio Atzori 4355f64810 reverted to version 1.2.5-SNAPSHOT 2024-05-02 11:23:53 +02:00
Claudio Atzori 66680b8b9a refactoring of common utilities 2024-05-02 11:16:58 +02:00
Claudio Atzori dcf23b3d06 Merge branch 'beta' into beta-release-1.2.5 2024-05-02 10:01:49 +02:00
Michele Artini f4068de298 code reindent + tests 2024-05-02 09:51:33 +02:00
Claudio Atzori 11bd89e132 [enrichment] use sparkExecutorMemory to define also the memoryOverhead 2024-05-01 08:32:59 +02:00
Claudio Atzori e96c2c1606 [ranking wf] set spark.executor.memoryOverhead to fine tune the resource consumption 2024-04-30 16:23:25 +02:00
Claudio Atzori 50c18f7a0b [dedup wf] revised memory settings to address the increased volume of input contents 2024-04-30 12:34:16 +02:00
Michele Artini 2615136efc added a retry mechanism 2024-04-30 11:58:42 +02:00
Sandro La Bruzzo 133ead1e3e updated new version of scholexplorer Generation 2024-04-29 09:00:30 +02:00
Sandro La Bruzzo 052c6aac9d formatted code 2024-04-26 16:03:04 +02:00
Sandro La Bruzzo 9cd3bc0f10 Added a new generation of the dump for scholexplorer tested with last version of spark, and strongly refactored 2024-04-26 16:02:07 +02:00
Claudio Atzori e2937db385 Merge branch 'beta' into misc_fixes_merge_entities 2024-04-24 08:55:28 +02:00
Giambattista Bloisi 1878199dae Miscellaneous fixes: 
- in Merge By ID pick by preference those records coming from delegated Authorities
- fix various tests
- close spark session in SparkCreateSimRels
 2024-04-24 08:12:45 +02:00
Sandro La Bruzzo 0d628cd62b merged again from beta 2024-04-23 17:34:55 +02:00
Lampros Smyrnaios 49af2e5740 Miscellaneous updates to the copying operation to Impala Cluster: 
- Update the algorithm for creating views that depend on other views; overcome some bash-instabilities.
- Upon any error, fail the whole process, not just the current DB-creation, as those errors usually indicate a bug in the initial DB-creation, that should be fixed immediately.
- Enhance parallel-copy of large files by "hadoop distcp" command.
- Reduce the "invalidate metadata" commands to just the current DB's tables, in order to eliminate the general overhead on Impala.
- Show the number of tables and views in the logs.
- Fix some log-messages.
 2024-04-23 17:15:04 +03:00
Antonis Lempesis d2649a1429 increased the jvm ram 2024-04-23 16:03:16 +03:00
Claudio Atzori c3053ef34d using version 1.2.5-beta for the release 2024-04-23 14:52:32 +02:00
Claudio Atzori b5bcab13ec using version 1.2.5-beta for the release 2024-04-23 14:36:39 +02:00
Claudio Atzori 425c9afc36 using version 1.2.5-beta for the release 2024-04-23 14:30:04 +02:00
Claudio Atzori 93dd9cc639 code formatting 2024-04-23 11:28:00 +02:00
Miriam Baglioni 6189879643 [NOAMI] removed entry for Irish Research eLibray (IReL) Care Board from the list of funders. 2024-04-23 11:09:18 +02:00
Miriam Baglioni 7de114bda0 [WebCrawl] addressing comments from PR 2024-04-22 13:52:50 +02:00
Sandro La Bruzzo 073f320c6a Added module containing all the dependencies, useful for spark deploy on k8. 2024-04-22 11:32:31 +02:00
Miriam Baglioni 776c898c4b [WebCrawl] adding affiliation relations from web information 2024-04-22 11:04:17 +02:00
Claudio Atzori 0656ab2838 code formatting 2024-04-20 08:10:58 +02:00
Claudio Atzori ab7f0855af fixed query reading projects from the aggregator DB 2024-04-20 08:10:32 +02:00
Claudio Atzori e5879b68c7 [transformative agreement] including reuslt-funder relations to the information imported from the TRs 2024-04-19 17:14:18 +02:00
Claudio Atzori 3a027e97a7 [graph indexing] sets spark memoryOverhead in the join operations to the same value used for the memory executor 2024-04-19 16:59:58 +02:00
Claudio Atzori 0c05abe50b [graph indexing] sets spark memoryOverhead in the join operations to the same value used for the memory executor 2024-04-19 16:57:55 +02:00
Sandro La Bruzzo b72c3139e2 updated Ignore annotation that is deprecated to Disabled 2024-04-19 14:52:40 +02:00
Sandro La Bruzzo b84ad0c06e merged beta 2024-04-19 14:39:59 +02:00
Antonis Lempesis b52a5a753b Merge remote-tracking branch 'upstream/beta' into beta 2024-04-19 15:28:28 +03:00
Sandro La Bruzzo 8dd9cf84e2 code formatted 2024-04-19 12:30:59 +02:00
Sandro La Bruzzo 342cb6189b fixed problem on changed signature on RowEncoder 
removed property dhp.schema.artifact
 2024-04-19 12:13:26 +02:00
Antonis Lempesis c3fe9662b2 all indicator tables are now stored as parquet 2024-04-19 12:45:36 +03:00
Claudio Atzori 57c678d904 integrating changes from PR#424 2024-04-18 11:38:35 +02:00
Claudio Atzori 5ab8cd1794 Various fixes for the stats DB update workflow, step16-createIndicatorsTables.sql 2024-04-18 11:28:18 +02:00
Claudio Atzori 18fdaaf548 integrating suggestion from #9699 to improve the result_country table construction 2024-04-18 11:23:43 +02:00
Antonis Lempesis 0c71c58df6 fixed the definition of gold_oa 2024-04-18 12:01:27 +03:00
Antonis Lempesis 43d05dbebb fixed the definition of result_country 2024-04-18 11:53:50 +03:00
Antonis Lempesis e728a0897c fixed the definition of indi_pub_bronze_oa 2024-04-18 11:07:55 +03:00
Antonis Lempesis 308ae580a9 slight optimization in indi_pub_gold_oa definition 2024-04-18 10:57:52 +03:00
Antonis Lempesis 27d22bd8f9 slight optimization in indi_pub_gold_oa definition 2024-04-17 23:59:52 +03:00
Antonis Lempesis 1f5aba12fa slight optimization in indi_pub_gold_oa definition 2024-04-17 23:54:23 +03:00
Claudio Atzori 43e123c624 added column alias 2024-04-17 16:40:29 +02:00
Claudio Atzori 62a07b7add added missing end of statement /*EOS*/ 2024-04-17 15:13:28 +02:00
Claudio Atzori 96bddcc921 revised query implementation for indi_pub_gold_oa 2024-04-17 15:06:50 +02:00
Claudio Atzori ac8747582c Merge branch 'beta' into doidoost_dismiss 2024-04-17 12:01:01 +02:00
Giambattista Bloisi 8ac167e420 Refinements to PR #404: refactoring the Oaf records merge utilities into dhp-common 2024-04-16 17:18:28 +02:00
Miriam Baglioni 0486cea4c4 removed the funder id : 100011062 Asian Spinal Cord Network, wrongly associated to Ireland 2024-04-16 15:36:40 +02:00
Miriam Baglioni 0625b9061f removed the funder id : 100011062 Asian Spinal Cord Network, wrongly associated to Ireland 2024-04-16 15:26:53 +02:00
Miriam Baglioni 9eeb9f5d32 mergin with branch beta 2024-04-16 15:24:40 +02:00
Claudio Atzori 589bce3520 Merge pull request '[pBETA] Improvements to copying data from ocean to impala' (#421) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#421
 2024-04-16 14:22:32 +02:00
Claudio Atzori 013935c593 Merge pull request 'Improvements to copying data from ocean to impala' (#420) from antonis.lempesis/dnet-hadoop:beta into master 
Reviewed-on: D-Net/dnet-hadoop#420
 2024-04-16 14:17:47 +02:00
Sandro La Bruzzo a5ddd8dfbb Added Action set generation for the MAG organization 2024-04-16 13:39:15 +02:00
Giambattista Bloisi da333e9f4d Merge pull request 'Enhance Dedup authors matching with algorithms used for ORCID enhancements (task 9690)' (#419) from dedup_authorsmatch_bytoken into beta 
Reviewed-on: D-Net/dnet-hadoop#419
 2024-04-16 10:24:11 +02:00
Michele Artini 78b9d84e4a test 2024-04-16 09:41:16 +02:00
Giambattista Bloisi 43b454399f - Bug fix in matchOrderedTokenAndAbbreviations algorithms where tokens with same initial character were always considered equal 
- AuthorsMatch exploits the new matching strategy used for ORCID enhancements in #PR398: split author names in tokens, order the tokens, then check for matches of ordered full tokens or abbreviations
 2024-04-15 18:19:29 +02:00
Lampros Smyrnaios d7da4f814b Minor updates to the copying operation to Impala Cluster: 
- Improve logging.
- Code optimization/polishing.
 2024-04-12 18:12:06 +03:00
Lampros Smyrnaios 14719dcd62 Miscellaneous updates to the copying operation to Impala Cluster: 
- Update the algorithm for creating views that depend on other views.
- Add check for successful execution of the "hadoop distcp" command.
- Add a check for successful copy operation of all entities.
- Upon facing an error in a DB, exit the method, instead of the whole script.
- Improve logging.
- Code polishing.
 2024-04-12 15:36:13 +03:00
Sandro La Bruzzo 41a42dde64 code formatted 2024-04-11 17:43:48 +02:00
Sandro La Bruzzo 843dc95340 resolved conflict 2024-04-11 17:38:16 +02:00
Sandro La Bruzzo 1e30454ee0 added vocabulary tu instanceTypeMApping of Mag 2024-04-11 17:32:30 +02:00
Sandro La Bruzzo 2581672c11 updated wf of MAG and crossref to use transaction 2024-04-11 17:27:49 +02:00
Lampros Smyrnaios 22745027c8 Use the "HADOOP_USER_NAME" value from the "workflow-property", in "copyDataToImpalaCluster.sh", in "stats-monitor-updates". 2024-04-11 17:46:33 +03:00
Lampros Smyrnaios abf0b69f29 Upgrade the copying operation to Impala Cluster: 
- Use only hive commands in the Ocean Cluster, as the "impala-shell" will be removed from there to free-up resources.
- Hugely improve the performance in every aspect of the copying process: a) speedup file-transferring and DB-deletion, b) eliminate permissions-assignment, "load" operations and "use $db" queries, c) retry only the "create view" statements and only as long as they depend on other non-created views, instead of trying to recreate all tables and views 5 consecutive times.
- Add error-checks for the creation of tables and views.
 2024-04-11 17:12:12 +03:00
Sandro La Bruzzo a0642bd190 added instanceTypeMapping field on MAG 2024-04-11 13:10:12 +02:00
Miriam Baglioni 519db1ddef Extended mapping of funder from crossref (#9169, #9277) and change the correspondece files for the irish fundrs (#9635). Extended the datacite map to include the association between metadata and the EBRAINS datasource (SciLake) 2024-04-09 09:33:09 +02:00
Sandro La Bruzzo 98dc042db5 mapping generated for MAG, 
missing generation of Organization Action set
 2024-04-05 18:12:53 +02:00
Sandro La Bruzzo ef582948a7 Updated mapping 2024-04-05 11:10:44 +02:00
Sandro La Bruzzo 5142f462b5 completed mapping from paper to OAF, not tested 2024-04-04 21:06:04 +02:00
Miriam Baglioni 0794e0667b Merge branch 'doidoost_dismiss' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doidoost_dismiss 2024-04-04 09:16:18 +02:00
Miriam Baglioni 4b1de076ac [DataciteHostedByMap] added entry for EBRAINS 2024-04-04 09:16:14 +02:00
Miriam Baglioni c8a88b2187 [DataciteHostedByMap] added entry for EBRAINS 2024-04-04 09:14:58 +02:00
Sandro La Bruzzo 31e152d2bb Merge remote-tracking branch 'origin/doidoost_dismiss' into doidoost_dismiss 2024-04-03 17:08:35 +02:00
Sandro La Bruzzo 6f3e925cae Implemented first part of the new MAG mapping 2024-04-03 17:07:14 +02:00
Miriam Baglioni f0f6abf892 [MapToFunderLink]added references for HFRI and Erasmus+ for the creation of links for funders 2024-04-03 14:59:09 +02:00
Claudio Atzori 26b97aa5ed Merge pull request '[BETA] fixed the result_country definition and updated the stats DB copy procedure' (#416) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#416
 2024-04-03 12:36:03 +02:00
Claudio Atzori 5add51f38c Merge pull request 'fixed the result_country definition and updated the stats DB copy procedure' (#412) from antonis.lempesis/dnet-hadoop:beta into master 
Reviewed-on: D-Net/dnet-hadoop#412
 2024-04-03 12:34:17 +02:00
Lampros Smyrnaios b7c8acc563 - Update the code which acquires the "IMPALA_HDFS_NODE", to test the "tmp"-dir, instead of the base-dir and introduce retries, to overcome potential file-system failures. This change was suggested by "Sebastian Tymkow" and "Grzegorz Bakalarski". 
- Fix typos.
 2024-04-03 13:15:37 +03:00