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151 Commits

Author SHA1 Message Date
Miriam Baglioni 0e5399bf74 seconf phase of data preparation. Groups all the possible updates by id 2020-04-16 16:08:51 +02:00
Miriam Baglioni 548ba915ac first phase of data preparation. For each result type (parallel) it produces the possible updates 2020-04-16 15:58:42 +02:00
Miriam Baglioni 243013cea3 to (de)serialize the association from the resultId and the list of autoritative authors with orcid to possibly propagate 2020-04-16 15:57:29 +02:00
Miriam Baglioni ac3ad25b36 to (de)serialize needed information of the author to determine if the orcid can be passed (name, surname, fullname (?), orcid) 2020-04-16 15:56:33 +02:00
Miriam Baglioni d6cd700a32 new implementation that exploits prepared information (the list of possible updates: resultId - possible list of orcid to be added 2020-04-16 15:55:25 +02:00
Miriam Baglioni f077f22f73 minor 2020-04-16 15:54:16 +02:00
Miriam Baglioni fd5d792e35 refactoring 2020-04-16 15:53:34 +02:00
Miriam Baglioni a5e5c81a2c input parameters and workflow definition for propagation of result to organization from institutional repositories 2020-04-16 11:03:41 +02:00
Miriam Baglioni 5e1bd67680 removed unuseful parameter 2020-04-16 11:02:01 +02:00
Miriam Baglioni eaf19ce01b removed unuseful class 2020-04-16 10:59:33 +02:00
Miriam Baglioni 7bd49abbef commit to delete 2020-04-16 10:59:09 +02:00
Miriam Baglioni 53f418098b added the isTest checkpoint 2020-04-16 10:53:48 +02:00
Miriam Baglioni c28333d43f minor 2020-04-16 10:52:50 +02:00
Miriam Baglioni a8100baed6 changed the way to save the results to aviod NegativeArray... error 2020-04-16 10:50:09 +02:00
Miriam Baglioni 79b978ec57 refactoring 2020-04-16 10:48:41 +02:00
Miriam Baglioni 3577219127 removed unuseful classes 2020-04-15 12:45:49 +02:00
Miriam Baglioni 964b22d418 modified the writing of the new relations. before: read old rels, add the new ones to them, write all the relations in new location. Now: first step of the wf copies the old relation i new location. If new relations are found, they are saved in the new location in append mode. 2020-04-15 12:32:01 +02:00
Miriam Baglioni 473d17767c new business logic for the actual propagation. It exploits previously computed information 2020-04-15 12:25:44 +02:00
Miriam Baglioni 6a377a7582 class to compute some information needed for the actual propagation 2020-04-15 12:25:11 +02:00
Miriam Baglioni 5a3487280d classes to serialize/deserialize the prepared data 2020-04-15 12:24:36 +02:00
Miriam Baglioni 62b09be43c added correct descritption for parameter isSparkSessionManaged 2020-04-15 12:23:06 +02:00
Miriam Baglioni 1859ce8902 minor refactoring 2020-04-15 12:21:31 +02:00
Miriam Baglioni 27f1d3ee8f minor refactoring 2020-04-15 12:21:05 +02:00
Miriam Baglioni 3f4b579e7f new workflow. It is composed of four steps. The first removes the directory where to store the results. The second copies the relation to the new locatio, the third id the preparation phase and then the actual propagation 2020-04-14 16:49:24 +02:00
Miriam Baglioni ca2b40952e minor changes 2020-04-14 16:48:02 +02:00
Miriam Baglioni 61d39e659e parameters for the project2result propagation phase 2020-04-14 16:47:39 +02:00
Miriam Baglioni 92f19fa0a0 parameters for the project2result preparation phase 2020-04-14 16:46:57 +02:00
Miriam Baglioni cadab9b81d new implementation for result to project propagation. Use the prepared info in propagation 2020-04-14 16:46:07 +02:00
Miriam Baglioni ceb1f299bf minor changes 2020-04-14 16:45:12 +02:00
Miriam Baglioni e0038bde5b Support class to serialize/deserialize the association project, set of linked results 2020-04-14 15:32:12 +02:00
Miriam Baglioni c0bebb7c35 code to compute the prepared information used in the actual propagation step. This step will produce who files: one with potential updates (association between projects and a list of results), the other already linked entities (association between projects and the list of results already linked to them) 2020-04-14 15:31:26 +02:00
Miriam Baglioni 8f12292daa changed the way to save the results on filesystem 2020-04-11 16:47:34 +02:00
Miriam Baglioni 87f802821e new workflow for country propagation: it is composed of the preparation step and in the propagation. The propagation part runs in parallel on the result types 2020-04-11 16:40:22 +02:00
Miriam Baglioni a562080b0b parameters to be used in the prepared Job and in the actual country propagation job 2020-04-11 16:39:17 +02:00
Miriam Baglioni aef9b3aa90 new parametric implementation of country propagation. Exploits information compute before and broadcasts it to each executor 2020-04-11 16:36:59 +02:00
Miriam Baglioni a2d833d5dd step of data preparation before actual country propagation will take palce 2020-04-11 16:36:03 +02:00
Miriam Baglioni 6897c920a2 classes in support of new implementation of country propagation 2020-04-11 16:35:26 +02:00
Miriam Baglioni 7783b09c5b new implementation for result to project propagation. Prepare some info to be used in propagation 2020-04-11 16:26:23 +02:00
Miriam Baglioni 90469789b9 two new classes fro new implementation of project to result propagation 2020-04-09 13:29:01 +02:00
Miriam Baglioni 627ad58a8b new wf definition 2020-04-09 11:33:19 +02:00
Miriam Baglioni 9c63c4840d new workflow and parameters for country propagation 2020-04-08 19:13:42 +02:00
Miriam Baglioni a2d309545b new parametrized implementation for country propagation 2020-04-08 19:12:59 +02:00
Miriam Baglioni 6dfdba9ef7 new parametrized implementation for country propagation 2020-04-08 18:14:37 +02:00
Miriam Baglioni 03f7cb6402 new parametrized implementation for country propagation 2020-04-08 18:08:41 +02:00
Miriam Baglioni fcfef4632f input parameters for country propagation preparation job 2020-04-08 18:07:18 +02:00
Miriam Baglioni 540da4ab61 new busuness logic with prepared info before actual job run 2020-04-08 13:04:04 +02:00
Miriam Baglioni 8438702b3d addition in propagation constants 2020-04-08 10:54:01 +02:00
Miriam Baglioni 2afe971816 new implementation for country propagatio 2020-04-08 10:49:09 +02:00
Miriam Baglioni beebbcf66b new config for countrypropagation 2020-04-08 10:31:29 +02:00
Miriam Baglioni dd011f4a95 to make them visible to Claudio 2020-03-30 10:55:47 +02:00
Miriam Baglioni b1af90a45f to make it visible to Claudio 2020-03-30 10:50:03 +02:00
Miriam Baglioni 19d7f8b51d decommented execution for some of the result type for testing purposes 2020-03-24 16:49:46 +01:00
Miriam Baglioni ad24c8478f added missing parameter 2020-03-24 16:19:59 +01:00
Miriam Baglioni 46094a3eec bug fixing for implementation with dataset 2020-03-24 16:19:36 +01:00
Miriam Baglioni ad712f2d79 added the needed variables in the config and read the variables in the workflow 2020-03-23 17:11:36 +01:00
Miriam Baglioni f1e9fe9752 changed implementation using dataset and query on hive 2020-03-23 17:11:00 +01:00
Miriam Baglioni f09cd1e911 removed unuseful variable in the configuration 2020-03-23 17:10:14 +01:00
Miriam Baglioni 9418e3d4fa read dataset from files instead of using hive tables 2020-03-23 17:09:27 +01:00
Miriam Baglioni a7bf037306 remove unused class 2020-03-23 14:36:43 +01:00
Miriam Baglioni 8ab8b6b0bf minor 2020-03-23 14:35:23 +01:00
Miriam Baglioni 30d58fd98c change the configuration of the workflow 2020-03-23 14:32:49 +01:00
Miriam Baglioni a440152b46 refactoring 2020-03-23 14:30:56 +01:00
Miriam Baglioni 47561f3597 changed the implementation from rdd to dataset got from sql queries (on hive) 2020-03-23 11:58:32 +01:00
Miriam Baglioni 67ea3cf3ed changed the way to read the file with info on resource or relation. From sequenceFile to textFile 2020-03-17 16:32:05 +01:00
Miriam Baglioni b4652d018c moved the creation of new dir to common class. 2020-03-17 16:31:24 +01:00
Miriam Baglioni e80f80ca93 properties and workflow for new propagation 2020-03-02 17:03:31 +01:00
Miriam Baglioni 50080c1b3c changed the implementation of addAll method. Before adding all the items in a collection, we check if the accumulator set is not empty 2020-03-02 16:41:37 +01:00
Miriam Baglioni 02815dd2cf update result for community moved in propagationconstants 2020-03-02 16:40:56 +01:00
Miriam Baglioni 95f8c3092f update for new propagation implementation and moving of updateResult for community business logic since the same can be used for result to community from organization and result to community from semrel 2020-03-02 16:40:17 +01:00
Miriam Baglioni 3d63f35dcb implementation of new propagation. Result to community for results linked to given organization. We exploit the hasAuthorInstitution semantic link to discover which results are related to institutions 2020-03-02 16:39:03 +01:00
Miriam Baglioni 3a4ccb26c0 New properties for the orcid to result propagation through semantic relation 2020-02-28 18:26:04 +01:00
Miriam Baglioni b50166b9ad None 2020-02-28 18:25:28 +01:00
Miriam Baglioni 550cb21c23 None 2020-02-28 18:24:39 +01:00
Miriam Baglioni b098ee0bae Changed the structure of typed row to conatain also list of authors with orcid 2020-02-28 18:23:51 +01:00
Miriam Baglioni 841f5523fe Added information and methods for the new propagation of orcid to result through semrel 2020-02-28 18:23:16 +01:00
Miriam Baglioni 2b7b05fb29 New propagation of ORCID to result exploiting the semantic relation connecting them. R has author with orcid o, R is bounf by strong semantic relationship with R1 that has the same author withouth orcid, then o is also associated to the author in R1 2020-02-28 18:22:41 +01:00
Miriam Baglioni 833c83c694 Wrong file name 2020-02-28 18:21:01 +01:00
Miriam Baglioni a86426776a Changed from Oaf to Result the type of the updateResult method parameter, not to be forced to cast each time 2020-02-28 18:20:19 +01:00
Miriam Baglioni 3f941a2af4 Merge branch 'master' into propagationCommunityToResult 2020-02-19 18:05:22 +01:00
Miriam Baglioni b2bdc9b99b merging project to result propagation logic to master 2020-02-19 18:04:59 +01:00
Miriam Baglioni a153a07997 none 2020-02-19 18:03:13 +01:00
Miriam Baglioni d0279af630 start to implement the business logic 2020-02-19 17:59:24 +01:00
Miriam Baglioni 5f63ab1416 to query the information system to get the list of comunities up to now. It will have a more general usage when introducing bulk tagging 2020-02-19 17:59:02 +01:00
Miriam Baglioni 79ff79b0cd propagation of result to community through semantic relation: C -> R and R -> isSupplementedBy R1 => C -> R1 2020-02-19 17:02:39 +01:00
Miriam Baglioni ab84163bb3 added set accumulator in TypedRow and used it to acucmulate country information in Country Propagation 2020-02-19 15:02:50 +01:00
Miriam Baglioni bb0fdf5e0a fix wrong source target in new relation 2020-02-19 15:00:46 +01:00
Miriam Baglioni 9e1678ccf8 fix error in workflow name 2020-02-19 14:59:24 +01:00
Miriam Baglioni 8aa3b4d7c0 adding to propagation constants the ones needed for propagation of project to result and addition of new accumulator Set in typed row to collect values of a type 2020-02-19 14:55:54 +01:00
Miriam Baglioni 7167673a58 implementation and configuration for propagation of project to result through semantic relation: P -> R1 and R1 -> supplemented by -> R2 => P -> R2 2020-02-19 14:54:18 +01:00
Miriam Baglioni b81e6af429 added config for new propagation 2020-02-18 17:30:44 +01:00
Miriam Baglioni b736a9581c changed relclass and reltype in reelation specification for country propagation and implementation of propagation of result affiliation through institutional repositories 2020-02-18 17:27:28 +01:00
Miriam Baglioni 2688a89c21 changed relclass and reltype in relation specification 2020-02-18 17:24:40 +01:00
Miriam Baglioni c0022fec9f moved on upper package to serve other propagations 2020-02-18 17:24:11 +01:00
Miriam Baglioni e0a777028a fix problem in parameters 2020-02-18 17:23:34 +01:00
Miriam Baglioni 18e4092d5c change name of properties dir 2020-02-17 18:07:06 +01:00
Miriam Baglioni bd0e504b42 changes to the wf configuration 2020-02-17 18:04:15 +01:00
Miriam Baglioni 3a9d723655 adding default parameters in code 2020-02-17 16:30:52 +01:00
Miriam Baglioni a5517eee35 adding the mkdirs for creation of propagation folder under provision on tmp 2020-02-17 14:20:42 +01:00
Miriam Baglioni 9abde5cfac removed outputPath from job parameters 2020-02-17 14:19:53 +01:00
Miriam Baglioni be2421d5d8 removed wrongly pushed file 2020-02-17 12:07:26 +01:00