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1326 Commits

Author SHA1 Message Date
Giambattista Bloisi 95cd2b9b1e Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob 
Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
 2023-08-10 11:53:48 +02:00
Giambattista Bloisi fab9920271 DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag 2023-08-09 15:41:43 +02:00
Miriam Baglioni c25ac21e5e Merge pull request 'graph cleaning, suggestions from ticket 8898' (#325) from cleaning_8898 into beta 
Reviewed-on: D-Net/dnet-hadoop#325
 2023-08-08 11:14:19 +02:00
Claudio Atzori 11ffb9bd68 rule out records with NULL dataInfo 2023-07-31 12:35:33 +02:00
Claudio Atzori 270df939c4 partial implementation of the suggestions from https://support.openaire.eu/issues/8898 2023-07-25 17:29:50 +02:00
Giambattista Bloisi e64c2854a3 Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface 
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
 2023-07-24 15:36:24 +02:00
Giambattista Bloisi bb5b845e3c Use scala.binary.version property to resolve scala maven dependencies 
Ensure consistent usage of maven properties
Profile for compiling with scala 2.12 and Spark 3.4
 2023-07-24 11:13:48 +02:00
Claudio Atzori b76a47b103 [aggregator graph] added column alias when mapping organization PIDs from the OpenOrgs database 2023-06-13 11:38:10 +02:00
Claudio Atzori ad04f14b81 Merge branch 'beta' into distinct_pids_from_openorgs_beta 2023-06-12 09:58:21 +02:00
Claudio Atzori e1409ffe80 update sql query to return distinct pids 2023-06-12 09:47:45 +02:00
Claudio Atzori e45777e7e1 [aggregator graph] added validation for URLs mapped from oaf:fulltext 2023-05-26 11:33:42 +02:00
Claudio Atzori 8acad52a0c Merge branch 'beta' into apc_affiliation 2023-05-15 15:47:33 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Miriam Baglioni 99ac5bab46 added check to avoid NPE when checking the organization country 2023-05-04 19:38:39 +02:00
Claudio Atzori d8882c4481 extended mapping applied to datacite records to produce affiliations using the ROR ids. Inc ase of APCs it includes the amount and the currently in the relation 2023-05-02 11:56:51 +02:00
Claudio Atzori 851f664bd9 Merge branch 'beta' into graph_cleaning_refactoring 2023-05-02 09:55:40 +02:00
Claudio Atzori a2dcb06daf added eoscifguidelines in the result view; removed compute statistics statements 2023-04-11 10:43:32 +02:00
Claudio Atzori 864f4051d3 [graph cleaning] added missing case 2023-04-05 11:35:47 +02:00
Claudio Atzori dead87917f [graph cleaning] cleanup 2023-04-04 13:13:43 +02:00
Claudio Atzori 2a6ba29b64 [graph cleaning] unit tests & cleanup 2023-04-04 12:34:51 +02:00
Claudio Atzori b502f86523 fixed input path supplemented to GetDatasourceFromCountry; adjusted the various spark.sql.shuffle.partitions 2023-03-24 13:09:12 +01:00
Claudio Atzori c07857fa37 [graph cleaning] unit tests & cleanup 2023-03-23 15:57:47 +01:00
Claudio Atzori 90e61a8aba [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-23 15:03:26 +01:00
Claudio Atzori 488d9a5eaa [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-23 10:41:13 +01:00
Claudio Atzori 4f5ba0ed52 [graph cleaning] WIP: refactoring of the cleaning stages, unit tests 2023-03-21 14:41:20 +01:00
Claudio Atzori 6d3d18d8b5 [graph cleaning] WIP: refactoring of the cleaning stages 2023-03-16 17:23:36 +01:00
Claudio Atzori 518618f1a9 [graph cleaning] avoid to overwrite the subject class to 'keyword' for those with provenance 'subject:fos' 2023-03-14 15:22:47 +01:00
Claudio Atzori e28d395e87 [aggregator graph] using dedicated path to sync claims, adjusted paths with wildcards 2023-03-08 21:16:52 +01:00
Claudio Atzori 5b8fd37314 [aggregator graph] using dedicated path to sync claims 2023-03-08 15:28:14 +01:00
Claudio Atzori 7fd89566c2 [aggregator graph] handle paths including wildcards 2023-03-08 12:43:00 +01:00
Claudio Atzori 8ec0d62d91 pre-group the records in each table before joning the contents from BETA and PROD together 2023-03-02 14:49:19 +01:00
Claudio Atzori 6f488547a7 ignore non processable records 2023-03-01 14:49:51 +01:00
Claudio Atzori 7d263f265e adjusted logs 2023-03-01 11:58:07 +01:00
Claudio Atzori 9c59dac859 followup changes reorganising the mdstore synchronisation mechanism 2023-03-01 10:16:20 +01:00
Sandro La Bruzzo 78e51c182a Added missing parametero to raw all workflow 2023-02-28 10:16:01 +01:00
Michele Artini fddcf701e9 updated the order of the compatibilities 2023-02-22 12:07:09 +01:00
Sandro La Bruzzo 8920932dd8 Code formatted 2023-02-08 11:34:18 +01:00
Sandro La Bruzzo 6c81a161d2 Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve 2023-02-08 10:29:09 +01:00
Miriam Baglioni d6895f0387 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-01-09 17:28:38 +01:00
Sandro La Bruzzo 3c9826f186 updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline 2022-12-21 11:21:17 +01:00
Miriam Baglioni 8685eaa706 [Clean Country] added test to verify remove of country 2022-12-16 15:31:25 +01:00
Miriam Baglioni dc0ec88a58 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-12-16 13:18:32 +01:00
Miriam Baglioni d791840b82 [Clean Country] added test to verify remove of country: 2022-12-16 13:18:29 +01:00
Claudio Atzori 7b80b24f82 [cleaning] country cleaning must use both PID and AlternateIdentifier fields 2022-12-15 14:49:04 +01:00
Claudio Atzori b8bafab8a0 [cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning 2022-12-12 14:43:03 +01:00
Sandro La Bruzzo 5e4866d033 implemented synch for single mdstore 2022-12-12 11:29:46 +01:00
Claudio Atzori c18b8048c3 [cleaning] avoid NPE 2022-12-10 11:41:38 +01:00
Claudio Atzori 8b44afe5e5 [cleaning] avoid NPE 2022-12-09 15:44:57 +01:00
Claudio Atzori 389dd25430 [cleaning] avoid NPE 2022-12-08 18:40:48 +01:00
Claudio Atzori 730228d73d [cleaning] align wf parameter names in test 2022-12-08 18:40:22 +01:00