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494 Commits

Author SHA1 Message Date
Miriam Baglioni 782984d8e5 added needed parameter 2020-05-28 23:52:41 +02:00
Miriam Baglioni 01f7876595 fix issue with flatMap - the return type must not be null 2020-05-28 23:50:32 +02:00
Miriam Baglioni 773735f870 added the path to the file containing the projects code from the db 2020-05-28 17:30:45 +02:00
Miriam Baglioni 6a15067a64 added one step in the workflow 2020-05-28 17:30:09 +02:00
Miriam Baglioni 5309a99a70 modified the PrepareProjects to consider those in the db 2020-05-28 17:29:53 +02:00
Miriam Baglioni b737ed8236 added part to read projects from the openaire db to filter out those in the csv file that are not in the db 2020-05-28 17:29:21 +02:00
Miriam Baglioni 35b7279147 changed test because data are saved as SequenceFile now, and because of the group by the umber of produced update decrease 2020-05-28 10:26:12 +02:00
Miriam Baglioni df44db686a refactoring 2020-05-28 10:07:00 +02:00
Miriam Baglioni 87b07f4af8 removed unused variables 2020-05-28 10:05:43 +02:00
Miriam Baglioni 1060977272 added fs actions to remove and the create the workingDir 2020-05-28 10:04:36 +02:00
Miriam Baglioni 96d1a3c431 deleted the file were to store the csv files 2020-05-28 10:04:10 +02:00
Miriam Baglioni 669c05c771 added groupBy before creating Actions 2020-05-28 10:00:45 +02:00
Miriam Baglioni 1855453434 changed the outputdir of the last step 2020-05-27 17:59:36 +02:00
Miriam Baglioni 92e3a52e91 merge branch with fork master 2020-05-26 15:57:51 +02:00
Claudio Atzori 7582532e73 [maven-release-plugin] prepare for next development iteration 2020-05-25 19:48:18 +02:00
Claudio Atzori 01c2e93395 [maven-release-plugin] prepare release dhp-1.2.1 2020-05-25 19:48:14 +02:00
Miriam Baglioni ac8025f469 - 2020-05-22 15:29:41 +02:00
Miriam Baglioni 50ad83b97f - 2020-05-22 15:27:19 +02:00
Miriam Baglioni 473c6d3a23 produces AtomicActions instead of Projects 2020-05-22 15:26:57 +02:00
Miriam Baglioni 4589c428b1 generate action sets and saves them in the hdfs path for the actions sets 2020-05-21 16:30:39 +02:00
Miriam Baglioni 055eec5a77 added resource for prepare project test 2020-05-20 13:54:10 +02:00
Miriam Baglioni 9079bc1f61 - 2020-05-20 13:53:32 +02:00
Miriam Baglioni 67ba4fde57 added test for prepare projects step 2020-05-20 13:53:08 +02:00
Miriam Baglioni 3c0eb12d3e removed the not zipped files 2020-05-20 10:31:05 +02:00
Miriam Baglioni c0d9e02340 zipped test resources that are too big 2020-05-20 10:30:25 +02:00
Miriam Baglioni 5e9c9fa87c tests 2020-05-20 10:29:57 +02:00
Miriam Baglioni faed7521bf added resources for testing 2020-05-20 10:29:29 +02:00
Miriam Baglioni 75491482de added a new preparation step to replicate each project for the programme it is associated to 2020-05-20 10:28:56 +02:00
Miriam Baglioni eb0e47ba53 parameters for h2020 programme 2020-05-20 10:26:44 +02:00
Miriam Baglioni 08218d2f3f new workflow with added steps 2020-05-19 18:44:25 +02:00
Miriam Baglioni 457293ccc0 test for the variuos steps of project update with programme 2020-05-19 18:43:42 +02:00
Miriam Baglioni 9447d78ef3 added preparation classes 2020-05-19 18:42:50 +02:00
Miriam Baglioni f0f14caf99 removed script files for shell actions not performed 2020-05-18 13:06:16 +02:00
Miriam Baglioni 23bbac7d7c - 2020-05-18 13:05:03 +02:00
Miriam Baglioni 4f1ff7ba73 added dependency to org.apache.commons common-csv 2020-05-18 13:04:39 +02:00
Miriam Baglioni abc45f2708 added dnet-45 HttpConnector and related Classes, produced the POJO for projects and programme 2020-05-18 13:04:06 +02:00
Miriam Baglioni 5a648016ef parameters from the GetFile class 2020-05-15 18:18:50 +02:00
Miriam Baglioni 83c262a483 workflow to download the files 2020-05-15 18:18:31 +02:00
Miriam Baglioni 22cb9e0da7 simple code to get file from URL 2020-05-15 18:18:01 +02:00
Claudio Atzori 60c40618d3 [maven-release-plugin] prepare for next development iteration 2020-05-11 10:17:14 +02:00
Claudio Atzori c267d958d5 [maven-release-plugin] prepare release dhp-1.2.0 2020-05-11 10:17:10 +02:00
Claudio Atzori 42f1a2bf94 bumped project version to 1.2.0-SNAPSHOT 2020-05-11 10:05:57 +02:00
Claudio Atzori 0ccc864ad9 [maven-release-plugin] prepare for next development iteration 2020-05-08 17:01:31 +02:00
Claudio Atzori 6e47c724c6 [maven-release-plugin] prepare release dhp-1.1.7 2020-05-08 17:01:27 +02:00
Claudio Atzori 0825321d0b improved unit tests in dhp-aggregation 2020-05-05 12:39:04 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Claudio Atzori 9147af7fed actionsets migration workflow moved in dhp-workflows/dhp-actionmanager 2020-04-20 15:24:33 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Claudio Atzori 6b5f9ca9cb raw graph creation workflow moved under dhp-graph-mapper, claims integration is included 2020-04-10 17:53:07 +02:00
Claudio Atzori 7061d07727 ActionSets migration serialize the output as plain text files instead of SequenceFiles 2020-04-01 14:58:22 +02:00
Claudio Atzori 377e1ba840 [maven-release-plugin] prepare for next development iteration 2020-03-30 20:06:00 +02:00
Claudio Atzori 76d9315129 [maven-release-plugin] prepare release dhp-1.1.6 2020-03-30 20:05:56 +02:00
Michele Artini ae03948eed Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-27 11:47:07 +01:00
Michele Artini f6e86b44a6 tests 2020-03-27 11:46:37 +01:00
Michele Artini 408be3c632 test and fixed a problem with datacite namespaces 2020-03-27 11:44:50 +01:00
Sandro La Bruzzo 0cd022ad6a merge with master 2020-03-26 14:08:29 +01:00
Claudio Atzori c0e825e713 dhp-aggregation workflow tests upgraded to junit5 2020-03-25 17:59:45 +01:00
Michele Artini ebe45003d9 fixed some junit packages 2020-03-25 16:45:03 +01:00
Michele Artini d9bfdcd607 updated poms 2020-03-25 16:31:12 +01:00
Michele Artini fd57722c69 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-03-25 15:56:49 +01:00
Michele Artini 2559299da4 tests 2020-03-25 12:25:00 +01:00
Michele Artini 0fda2c3a30 some tests on db records 2020-03-25 09:43:58 +01:00
Michele Artini e3760c7f39 fix a bug with organization countries 2020-03-24 08:43:56 +01:00
Claudio Atzori ecb64e4998 Merge branch 'migration_wfs_regular_all_steps' 2020-03-23 08:57:01 +01:00
Michele Artini 15160032bd fixed a bug setting some organization fields 2020-03-23 08:39:14 +01:00
Claudio Atzori 36236dd1c1 action migration workflow produces eu.dnetlib.dhp.schema.action.AtomicAction(s) 2020-03-19 14:00:38 +01:00
Claudio Atzori abe8fb69a2 added global properties, moved postprocessing script inside the oozie_app directory 2020-03-18 15:43:54 +01:00
Claudio Atzori c7e0730720 compress the output produced by migration steps 1 and 2 2020-03-18 09:34:57 +01:00
Claudio Atzori 2f11e37602 fixed expansion of path variables 2020-03-17 19:41:07 +01:00
Claudio Atzori 2795b0b096 no need to mkdir a the all_entities file 2020-03-17 17:22:14 +01:00
Claudio Atzori 19746ad308 when reuseContent, reset ${workingPath}/all_entities 2020-03-17 17:17:06 +01:00
Claudio Atzori 2f0c85eeb3 updated parameters for regular_all_steps worfklow, introduced flag 'reuseContent' 2020-03-17 17:04:58 +01:00
Claudio Atzori b8290b5851 updated parameters for regular_all_steps worfklow 2020-03-17 15:45:30 +01:00
Claudio Atzori 4706f24ec5 updated parameters for regular_all_steps worfklow 2020-03-17 15:23:54 +01:00
Claudio Atzori af835f2f98 when migrating actionsets from DM cluster, populate the AtomicAction.targetValue when empty (dedup similarities) 2020-03-15 18:07:59 +01:00
Claudio Atzori 9c84e21b87 added workflow to migrate latest version of each actionset content from DM to OCEAN cluster, mapping the targetValues from the old protobuf data model to the dhp.OAF datamodel 2020-03-13 15:56:52 +01:00
Michele Artini b6efa9d6ab Configuration of the SequenceFile Writer 2020-03-05 15:49:14 +01:00
Michele Artini 755eade2fb fix creation ids 2020-03-04 14:49:45 +01:00
Michele Artini e7167b996a logs and closeable 2020-03-04 10:46:36 +01:00
Michele Artini 4b29a121b0 migration using spark in step2 2020-03-02 16:12:14 +01:00
Michele Artini 5445a57102 migration using spark in step2 2020-03-02 16:11:59 +01:00
Michele Artini 93665773ea Fixed a problem with JavaRDD Union 2020-02-25 15:59:21 +01:00
Michele Artini 5d3739b5cf migration of claims 2020-02-19 15:11:17 +01:00
Michele Artini 173f1df1e5 saved a query for openaire production database 2020-02-19 10:15:08 +01:00
Sandro La Bruzzo 9a2d74ac82 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-02-19 10:13:45 +01:00
Sandro La Bruzzo e5d7cdf422 fixed sql query 2020-02-19 10:13:36 +01:00
Sandro La Bruzzo 2b8675462f refactoring code 2020-02-19 10:07:08 +01:00
Claudio Atzori 6a288625e5 fixed workflow outgoing node 2020-02-17 15:04:33 +01:00
Sandro La Bruzzo 76ee85141a added oozie job for DNET migration and implemented Spark job for extracting entities 2020-02-17 12:31:44 +01:00
Michele Artini 176c5606bd aligned with origin/master, aligned model and mapping 2020-02-17 10:40:53 +01:00
Claudio Atzori a3d0b57b25 [maven-release-plugin] prepare for next development iteration 2020-02-13 18:11:33 +01:00
Claudio Atzori 6ed9a15bc8 [maven-release-plugin] prepare release dhp-1.1.5 2020-02-13 18:11:31 +01:00
Claudio Atzori 49e648f7c3 bumped version 2020-02-13 18:09:31 +01:00
Michele Artini 80cb52593f bug fixing 2020-02-13 15:34:13 +01:00
Michele Artini cdea0dae75 bug fixing 2020-02-12 16:34:00 +01:00
Michele Artini 69336195d3 simplifications 2020-02-12 11:12:38 +01:00
Michele Artini 06c2fd6df9 bug fixing 2020-02-11 15:29:50 +01:00
Michele Artini 5fc09b179c bug fixing 2020-02-11 12:48:03 +01:00
Michele Artini 95740767e0 Ready for tests 2020-02-10 16:04:06 +01:00
Michele Artini 181e8498d4 ... 2020-02-07 16:02:49 +01:00
Michele Artini bb1533a07e partial commit 2020-02-05 15:35:40 +01:00
Michele Artini fbb0fc140b partial implementation of migration 2020-02-04 15:25:47 +01:00
Michele Artini 6bfe2dc96e partial implementation 2020-01-22 16:00:23 +01:00
Michele Artini f6eccdde33 partial implementation 2020-01-21 14:17:05 +01:00
Michele Artini cd114f1c3b partial update 2020-01-21 12:32:10 +01:00
Michele Artini b35c59eb42 partial implementation of entities from db 2020-01-20 16:04:19 +01:00
Michele Artini 81f82b5d34 partial implementation of applications to migrate entities 2020-01-17 15:26:21 +01:00
Michele Artini f7b9a7a9af entity migration (partial implementation) 2020-01-10 15:55:23 +01:00
Michele Artini 7229fecbcf fix warnings in poms 2019-12-20 13:41:08 +01:00
Sandro La Bruzzo abd9034da0 implemented DedupRecord factory with the merge of publications 2019-12-11 15:43:24 +01:00
miconis 4b66b471a4 implementation of the sorting by trust mechanism and the merge of oaf entities 2019-12-10 14:57:16 +01:00
Sandro La Bruzzo cc63706347 Implemented deduplication on spark 2019-12-06 13:38:00 +01:00
Claudio Atzori 5711e75f67 use ${project.version} whenever possible 2019-11-08 17:41:51 +01:00
Claudio Atzori 7fe6835b47 [maven-release-plugin] prepare for next development iteration 2019-11-07 17:39:30 +01:00
Claudio Atzori 58918967d9 [maven-release-plugin] prepare release dhp-1.0.4 2019-11-07 17:39:27 +01:00
Claudio Atzori 1e7a2ac41d align parmeter names, graph import procedure WIP 2019-11-04 17:41:01 +01:00
Claudio Atzori f39148dab8 [maven-release-plugin] prepare for next development iteration 2019-11-04 12:34:48 +01:00
Claudio Atzori 34b0e7b40a [maven-release-plugin] prepare release dhp-1.0.3 2019-11-04 12:34:46 +01:00
Sandro La Bruzzo fd0ad82111 [maven-release-plugin] prepare for next development iteration 2019-10-31 12:08:51 +01:00
Sandro La Bruzzo f224613b40 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:08:49 +01:00
Sandro La Bruzzo e13c30cc96 [maven-release-plugin] rollback the release of dhp-1.0.2 2019-10-31 12:07:04 +01:00
Sandro La Bruzzo 4da5239203 [maven-release-plugin] prepare release dhp-1.0.2 2019-10-31 12:06:14 +01:00
Sandro La Bruzzo db8b346edd [maven-release-plugin] rollback the release of 1.0.1 2019-10-31 11:49:05 +01:00
Sandro La Bruzzo fc80052173 [maven-release-plugin] prepare for next development iteration 2019-10-31 11:47:42 +01:00
Sandro La Bruzzo 3150c7ce6d [maven-release-plugin] prepare release 1.0.1 2019-10-31 11:47:40 +01:00
Claudio Atzori c8bb81cd9a align dependencies with IIS cluster 2019-10-29 18:10:20 +01:00
Sandro La Bruzzo 5744a64478 added module dhp=graph-mapper 2019-10-24 16:00:28 +02:00
Sandro La Bruzzo 5a8a323f2a dhp-collection-worker integrated in dhp-workflows 2019-10-24 11:36:59 +02:00
Claudio Atzori dd1d6fcb01 moved libs in main pom file 2019-10-18 10:50:55 +02:00
Claudio Atzori c7654b6fe3 renamed collection & transformation oozie workflow files 2019-10-18 09:42:20 +02:00
Claudio Atzori 27db5afdad integrating the oozie workflow build/deploy/run mechanism, took inspiration from iis 2019-10-17 18:38:30 +02:00
Sandro La Bruzzo bbb87d0e3d implemented saxonHE on transformation spark job 2019-10-10 11:33:51 +02:00
Sandro La Bruzzo 4b8c7c279d Added documentation on a class, and reused ArgumetApplicationParser on dhp-aggregation 2019-10-07 17:02:53 +02:00
Sandro La Bruzzo 53ec9bccca changed the implemetation of RabitMQ Comunication 2019-04-16 12:28:01 +02:00
Sandro La Bruzzo 403c13eebf Implemented message manager, Fixed bug on collection worker, implemented Collecion and Transform spark job 2019-04-11 15:39:29 +02:00
Sandro La Bruzzo ded6aef5e1 moved collector worker 2019-04-03 16:05:16 +02:00
Sandro La Bruzzo c2ecbf5572 moved collector worker 2019-04-03 16:03:36 +02:00
Sandro La Bruzzo 12c65eab4c implemented command line 2019-03-25 15:18:31 +01:00
Sandro La Bruzzo 6156562893 Added test 2019-03-18 10:47:28 +01:00
Sandro La Bruzzo e67d9ee1a9 added first implementation of dnet-workflows 2019-03-18 10:44:35 +01:00