forked from D-Net/dnet-hadoop
fixed typos in indicators. Added extra views in monitor
This commit is contained in:
parent
3ce1976627
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336
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
Normal file → Executable file
336
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql
Normal file → Executable file
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@ -1,28 +1,29 @@
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---- Sprint 1 ----
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create table indi_pub_green_oa stored as parquet as
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select distinct p.id, coalesce(green_oa, 0) as green_oa
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select distinct p.id, coalesce(green_oa, 0) as green_oa
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from publication p
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left outer join (
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select p.id, 1 as green_oa
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left outer join (
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select p.id, 1 as green_oa
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from publication p
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join result_instance ri on ri.id = p.id
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join datasource on datasource.id = ri.hostedby
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where datasource.type like '%Repository%'
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and (ri.accessright = 'Open Access'
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or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp
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and (ri.accessright = 'Open Access'
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or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp
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on p.id= tmp.id;
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create table indi_pub_grey_lit stored as parquet as
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select distinct p.id, coalesce(grey_lit, 0) as grey_lit
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from publication p
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left outer join (
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select p.id, 1 as grey_lit
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select p.id, 1 as grey_lit
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from publication p
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join result_classifications rt on rt.id = p.id
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where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
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where rt.type not in ('Article','Part of book or chapter of book','Book','Doctoral thesis','Master thesis','Data Paper', 'Thesis', 'Bachelor thesis', 'Conference object') and
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not exists (select 1 from result_classifications rc where type ='Other literature type' and rc.id=p.id)) tmp on p.id=tmp.id;
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create table indi_pub_doi_from_crossref stored as parquet as
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select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
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select distinct p.id, coalesce(doi_from_crossref, 0) as doi_from_crossref
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from publication p
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left outer join
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(select ri.id, 1 as doi_from_crossref from result_instance ri
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@ -33,7 +34,7 @@ on tmp.id=p.id;
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create table indi_pub_gold_oa stored as parquet as
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select distinct p.id, coalesce(gold_oa, 0) as gold_oa
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from publication p
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left outer join (
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left outer join (
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select p.id, 1 as gold_oa
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from publication p
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join result_instance ri on ri.id = p.id
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@ -41,255 +42,56 @@ join datasource on datasource.id = ri.hostedby
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where datasource.id like '%doajarticles%') tmp
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on p.id= tmp.id;
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--create table indi_project_pubs_count stored as parquet as
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--select pr.id id, count(p.id) total_pubs from project_results pr
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--join publication p on p.id=pr.result
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--group by pr.id;
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--create table indi_project_datasets_count stored as parquet as
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--select pr.id id, count(d.id) total_datasets from project_results pr
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--join dataset d on d.id=pr.result
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--group by pr.id;
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--create table indi_project_software_count stored as parquet as
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--select pr.id id, count(s.id) total_software from project_results pr
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--join software s on s.id=pr.result
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--group by pr.id;
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--create table indi_project_otherresearch_count stored as parquet as
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--select pr.id id, count(o.id) total_other from project_results pr
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--join otherresearchproduct o on o.id=pr.result
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--group by pr.id;
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--create table indi_pub_avg_year_country_oa stored as parquet as
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--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
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--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
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--from
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--(SELECT year, country, SUM(CASE
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--WHEN bestlicence='Open Access' THEN 1
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--ELSE 0
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--END) AS OpenAccess, SUM(CASE
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--WHEN bestlicence<>'Open Access' THEN 1
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--ELSE 0
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--END) AS NonOpenAccess
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--FROM publication p
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--join result_organization ro on p.id=ro.id
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--join organization o on o.id=ro.organization
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by year, country) tmp;
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--create table indi_dataset_avg_year_country_oa stored as parquet as
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--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
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--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
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--from
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--(SELECT year, country, SUM(CASE
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--WHEN bestlicence='Open Access' THEN 1
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--ELSE 0
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--END) AS OpenAccess, SUM(CASE
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--WHEN bestlicence<>'Open Access' THEN 1
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--ELSE 0
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--END) AS NonOpenAccess
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--FROM dataset d
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--join result_organization ro on d.id=ro.id
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--join organization o on o.id=ro.organization
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by year, country) tmp;
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--create table indi_software_avg_year_country_oa stored as parquet as
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--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
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--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
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--from
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-- (SELECT year, country, SUM(CASE
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--WHEN bestlicence='Open Access' THEN 1
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-- ELSE 0
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--END) AS OpenAccess, SUM(CASE
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-- WHEN bestlicence<>'Open Access' THEN 1
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-- ELSE 0
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-- END) AS NonOpenAccess
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-- FROM software s
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-- join result_organization ro on s.id=ro.id
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-- join organization o on o.id=ro.organization
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-- where cast(year as int)>=2003 and cast(year as int)<=2021
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-- group by year, country) tmp;
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--create table indi_other_avg_year_country_oa stored as parquet as
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--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
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--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
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-- from
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-- (SELECT year, country, SUM(CASE
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-- WHEN bestlicence='Open Access' THEN 1
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-- ELSE 0
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-- END) AS OpenAccess, SUM(CASE
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-- WHEN bestlicence<>'Open Access' THEN 1
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-- ELSE 0
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-- END) AS NonOpenAccess
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-- FROM otherresearchproduct orp
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-- join result_organization ro on orp.id=ro.id
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-- join organization o on o.id=ro.organization
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-- where cast(year as int)>=2003 and cast(year as int)<=2021
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-- group by year, country) tmp;
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--create table indi_pub_avg_year_context_oa stored as parquet as
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--with total as
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--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from publication_concepts pc
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--join context c on pc.concept like concat('%',c.id,'%')
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--join publication p on p.id=pc.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by c.name, year )
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--select year, name, round(no_of_pubs/total*100,3) averageofpubs
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--from total;
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--create table indi_dataset_avg_year_context_oa stored as parquet as
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--with total as
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--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from dataset_concepts pc
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--join context c on pc.concept like concat('%',c.id,'%')
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--join dataset p on p.id=pc.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by c.name, year )
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--select year, name, round(no_of_pubs/total*100,3) averageofdataset
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--from total;
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--create table indi_software_avg_year_context_oa stored as parquet as
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--with total as
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--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from software_concepts pc
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--join context c on pc.concept like concat('%',c.id,'%')
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--join software p on p.id=pc.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by c.name, year )
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--select year, name, round(no_of_pubs/total*100,3) averageofsoftware
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--from total;
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--create table indi_other_avg_year_context_oa stored as parquet as
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--with total as
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--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from otherresearchproduct_concepts pc
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--join context c on pc.concept like concat('%',c.id,'%')
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--join otherresearchproduct p on p.id=pc.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by c.name, year )
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--select year, name, round(no_of_pubs/total*100,3) averageofother
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--from total;
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--create table indi_other_avg_year_content_oa stored as parquet as
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--with total as
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--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
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--from otherresearchproduct_datasources pd
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--join datasource d on datasource=d.id
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--join otherresearchproduct p on p.id=pd.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by d.type, year)
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--select year, type, round(no_of_pubs/total*100,3) averageOfOtherresearchproduct
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--from total;
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--create table indi_software_avg_year_content_oa stored as parquet as
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--with total as
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--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
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--from software_datasources pd
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--join datasource d on datasource=d.id
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--join software p on p.id=pd.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by d.type, year)
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--select year, type, round(no_of_pubs/total*100,3) averageOfSoftware
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--from total;
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--create table indi_dataset_avg_year_content_oa stored as parquet as
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--with total as
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--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
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--from dataset_datasources pd
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--join datasource d on datasource=d.id
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--join dataset p on p.id=pd.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by d.type, year)
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--select year, type, round(no_of_pubs/total*100,3) averageOfDatasets
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--from total;
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--create table indi_pub_avg_year_content_oa stored as parquet as
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--with total as
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--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
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--from publication_datasources pd
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--join datasource d on datasource=d.id
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--join publication p on p.id=pd.id
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--where cast(year as int)>=2003 and cast(year as int)<=2021
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--group by d.type, year)
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--select year, type, round(no_of_pubs/total*100,3) averageOfPubs
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--from total;
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create table indi_pub_has_cc_licence stored as parquet as
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select distinct p.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
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from publication p
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left outer join (select p.id, license.type as lic from publication p
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join publication_licenses as license on license.id = p.id
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---- Sprint 2 ----
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create table indi_result_has_cc_licence stored as parquet as
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select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
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from result r
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left outer join (select r.id, license.type as lic from result r
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join result_licenses as license on license.id = r.id
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where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
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on p.id= tmp.id;
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on r.id= tmp.id;
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create table indi_pub_has_cc_licence_url stored as parquet as
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select distinct p.id, (case when lic_host='' or lic_host is null then 0 else 1 end) as has_cc_license_url
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from publication p
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left outer join (select p.id, lower(parse_url(license.type, "HOST")) as lic_host
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from publication p
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join publication_licenses as license on license.id = p.id
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WHERE lower(parse_url(license.type, 'HOST')) = 'creativecommons.org') tmp
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on p.id= tmp.id;
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-- EOSC-TR1.1-02M:
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-- ## Indicator: has_cc_license. Creative Commons licensing has become a
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-- de facto standard in scholarly communication and is promoted by many initiatives
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-- like Plan S. This indicator might be only useful when applied
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-- to openly available publications.
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--create table indi_pub_has_cc_licence_tr stored as parquet as
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--select distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_tr
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--from publication p
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--left outer join (select p.id, license.type as lic from publication p
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--join publication_licenses as license on license.id = p.id
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--where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
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--on p.id= tmp.id
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-- #EOSC-F2-01M_cc Rich metadata for scholarly publications
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-- ## Indicator: has_cc_license. Creative Commons licensing has become a
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-- de facto standard in scholarly communication and is promoted by many initiatives
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-- like Plan S. This indicator might be only useful when applied
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-- to openly available publications.
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-- Same indicator as EOSC-TR1.1-02M (Najko's instructions)
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-- create table indi_pub_has_cc_licence_f stored as parquet as
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-- select
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-- distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_f
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-- from publication p
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-- left outer join (selectp.id,license.type as lic from publication p
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-- join publication_licenses as license on license.id = p.id
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-- where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
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-- on p.id= tmp.id
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create table indi_result_has_cc_licence_url stored as parquet as
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select distinct r.id, case when lic_host='' or lic_host is null then 0 else 1 end as has_cc_license_url
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from result r
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left outer join (select r.id, lower(parse_url(license.type, "HOST")) as lic_host
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from result r
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join result_licenses as license on license.id = r.id
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WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp
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on r.id= tmp.id;
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create table indi_pub_has_abstract stored as parquet as
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select distinct publication.id, coalesce(abstract, 1) has_abstract
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from publication;
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create table indi_result_with_orcid stored as parquet as
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create table indi_result_with_orcid stored as parquet as
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select distinct r.id, coalesce(has_orcid, 0) as has_orcid
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from result r
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left outer join (select id, 1 as has_orcid from result_orcid) tmp
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on r.id= tmp.id
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from result r
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left outer join (select id, 1 as has_orcid from result_orcid) tmp
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on r.id= tmp.id;
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create table indi_funded_result_with_fundref stored as parquet as
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---- Sprint 3 ----
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create table indi_funded_result_with_fundref stored as parquet as
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select distinct r.id, coalesce(fundref, 0) as fundref
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from project_results r
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from project_results r
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left outer join (select distinct id, 1 as fundref from project_results
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where provenance='Harvested') tmp
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on r.id= tmp.id
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where provenance='Harvested') tmp
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on r.id= tmp.id;
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create table indi_result_org_country_collab stored as parquet as
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with tmp as
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create table indi_result_org_country_collab stored as parquet as
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with tmp as
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(select o.id as id, o.country , ro.id as result,r.type from organization o
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join result_organization ro on o.id=ro.organization
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join result r on r.id=ro.id where o.country <> 'UNKNOWN')
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select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations
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from tmp as o1
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join tmp as o2 on o1.result=o2.result
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where o1.id<>o2.id and o1.country<>o2.country
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group by o1.id, o1.type,o2.country
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where o1.id<>o2.id and o1.country<>o2.country
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group by o1.id, o1.type,o2.country;
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create table indi_result_org_collab stored as parquet as
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with tmp as
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create table indi_result_org_collab stored as parquet as
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with tmp as
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(select o.id, ro.id as result,r.type from organization o
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join result_organization ro on o.id=ro.organization
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join result r on r.id=ro.id)
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@ -297,66 +99,82 @@ select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaboratio
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from tmp as o1
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join tmp as o2 on o1.result=o2.result
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where o1.id<>o2.id
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group by o1.id, o2.id, o1.type
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group by o1.id, o2.id, o1.type;
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create table indi_funder_country_collab stored as parquet as
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with tmp as (select funder, project, country from organization_projects op
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join organization o on o.id=op.id
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join project p on p.id=op.project
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create table indi_funder_country_collab stored as parquet as
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with tmp as (select funder, project, country from organization_projects op
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join organization o on o.id=op.id
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join project p on p.id=op.project
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where country <> 'UNKNOWN')
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select f1.funder, f1.country as country1, f2.country as country2, count(distinct f1.project) as collaborations
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select f1.funder, f1.country, f2.country, count(distinct f1.project) as collaborations
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from tmp as f1
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join tmp as f2 on f1.project=f2.project
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where f1.country<>f2.country
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group by f1.funder, f2.country, f1.country
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where f1.country<>f2.country
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group by f1.funder, f2.country, f1.country;
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create table indi_result_country_collab stored as parquet as
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with tmp as
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(select country, ro.id as result,r.type from organization o
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join result_organization ro on o.id=ro.organization
|
||||
join result r on r.id=ro.id)
|
||||
select o1.country country1, o2.country country2, o1.type, count(distinct o1.result) as collaborations
|
||||
from tmp as o1
|
||||
join tmp as o2 on o1.result=o2.result
|
||||
where o1.country<>o2.country
|
||||
group by o1.country, o2.country, o1.type;
|
||||
|
||||
---- Sprint 4 ----
|
||||
create table indi_pub_diamond stored as parquet as
|
||||
select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
|
||||
select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
|
||||
from publication_datasources pd
|
||||
left outer join (
|
||||
select pd.id, 1 as in_diamond_journal from publication_datasources pd
|
||||
join datasource d on d.id=pd.datasource
|
||||
join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
|
||||
and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp
|
||||
on pd.id=tmp.id
|
||||
on pd.id=tmp.id;
|
||||
|
||||
create table indi_pub_hybrid stored as parquet as
|
||||
select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
|
||||
select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
|
||||
from publication_datasources pd
|
||||
left outer join (
|
||||
select pd.id, 1 as is_hybrid from publication_datasources pd
|
||||
join datasource d on d.id=pd.datasource
|
||||
join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
|
||||
and (ps.journal_is_in_doaj=false and ps.journal_is_oa=false)) tmp
|
||||
on pd.id=tmp.id
|
||||
on pd.id=tmp.id;
|
||||
|
||||
create table indi_is_gold_oa stored as parquet as
|
||||
(select distinct pd.id, coalesce(gold_oa, 0) as gold_oa
|
||||
(select distinct pd.id, coalesce(gold_oa, 0) as gold_oa
|
||||
from publication_datasources pd
|
||||
left outer join (
|
||||
select pd.id, 1 as gold_oa from publication_datasources pd
|
||||
join datasource d on d.id=pd.datasource
|
||||
join stats_ext.plan_s_jn ps on (ps.issn_print=d.issn_printed or ps.issn_online=d.issn_online)
|
||||
where ps.journal_is_in_doaj is true or ps.journal_is_oa is true) tmp
|
||||
on pd.id=tmp.id)
|
||||
|
||||
on pd.id=tmp.id);
|
||||
|
||||
create table indi_pub_in_transformative stored as parquet as
|
||||
select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
|
||||
select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
|
||||
from publication pd
|
||||
left outer join (
|
||||
select pd.id, 1 as is_transformative from publication_datasources pd
|
||||
join datasource d on d.id=pd.datasource
|
||||
join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
|
||||
and ps.is_transformative_journal=true) tmp
|
||||
on pd.id=tmp.id
|
||||
on pd.id=tmp.id;
|
||||
|
||||
create table indi_pub_closed_other_open stored as parquet as
|
||||
select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from result_instance ri
|
||||
left outer join
|
||||
left outer join
|
||||
(select ri.id, 1 as pub_closed_other_open from result_instance ri
|
||||
join publication p on p.id=ri.id
|
||||
join datasource d on ri.hostedby=d.id
|
||||
where d.type like '%Journal%' and ri.accessright='Closed Access' and
|
||||
(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp
|
||||
on tmp.id=ri.id
|
||||
(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp
|
||||
on tmp.id=ri.id;
|
||||
|
||||
|
||||
---- Sprint 5 ----
|
||||
create table indi_result_no_of_copies stored as parquet as
|
||||
select id, count(id) as number_of_copies from result_instance group by id;
|
||||
|
|
@ -52,7 +52,8 @@ compute stats TARGET.result_languages;
|
|||
create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_licenses;
|
||||
|
||||
create table TARGET.licenses_normalized as select * from SOURCE.licenses_normalized;
|
||||
create table TARGET.licenses_normalized stored as parquet as select * from SOURCE.licenses_normalized orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.licenses_normalized;
|
||||
|
||||
create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_oids;
|
||||
|
|
@ -141,9 +142,6 @@ compute stats TARGET.indi_pub_closed_other_open;
|
|||
create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.indi_result_no_of_copies;
|
||||
|
||||
--- Usage statistics
|
||||
create table TARGET.usage_stats stored as parquet as select * from SOURCE.usage_stats orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
|
||||
|
||||
--denorm
|
||||
alter table TARGET.result rename to TARGET.res_tmp;
|
||||
|
||||
|
|
|
|||
Loading…
Reference in New Issue