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Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop

This commit is contained in:
Michele Artini 2020-02-20 11:21:54 +01:00
parent 5d3739b5cf d42dde52ba
commit d49cd2fdc6
7 changed files with 43 additions and 11 deletions
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12
dhp-common/pom.xml
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@ -46,6 +46,18 @@
<groupId>net.sf.saxon</groupId>
<artifactId>Saxon-HE</artifactId>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-transports-http</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>cnr-rmi-api</artifactId>
</dependency>
</dependencies>
</project>

2
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/utils/ISLookupClientFactory.java → dhp-common/src/main/java/eu/dnetlib/dhp/utils/ISLookupClientFactory.java
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@ -1,4 +1,4 @@
package eu.dnetlib.dhp.graph.utils;
package eu.dnetlib.dhp.utils;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import org.apache.commons.logging.Log;

22
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Relation.java
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@ -1,6 +1,11 @@
package eu.dnetlib.dhp.schema.oaf;
import org.junit.Assert;
import java.util.ArrayList;
import java.util.List;
import java.util.stream.Collectors;
import java.util.stream.Stream;
public class Relation extends Oaf {
@ -14,7 +19,7 @@ public class Relation extends Oaf {
private String target;
private List<KeyValue> collectedFrom;
private List<KeyValue> collectedFrom = new ArrayList<>();
public String getRelType() {
return relType;
@ -63,4 +68,19 @@ public class Relation extends Oaf {
public void setCollectedFrom(List<KeyValue> collectedFrom) {
this.collectedFrom = collectedFrom;
}
public void mergeFrom(final Relation r) {
Assert.assertEquals("source ids must be equal", getSource(), r.getSource());
Assert.assertEquals("target ids must be equal", getTarget(), r.getTarget());
Assert.assertEquals("relType(s) must be equal", getRelType(), r.getRelType());
Assert.assertEquals("subRelType(s) must be equal", getSubRelType(), r.getSubRelType());
Assert.assertEquals("relClass(es) must be equal", getRelClass(), r.getRelClass());
setCollectedFrom(
Stream.concat(
getCollectedFrom().stream(),
r.getCollectedFrom().stream())
.distinct() // relies on KeyValue.equals
.collect(Collectors.toList()));
}
}

8
dhp-workflows/dhp-graph-provision/pom.xml
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@ -66,14 +66,6 @@
<artifactId>zookeeper</artifactId>
</dependency>
<dependency>
<groupId>org.apache.cxf</groupId>
<artifactId>cxf-rt-transports-http</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>cnr-rmi-api</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib.dhp</groupId>

2
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/SparkXmlIndexingJob.java
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@ -2,8 +2,8 @@ package eu.dnetlib.dhp.graph;
import com.lucidworks.spark.util.SolrSupport;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.graph.utils.ISLookupClientFactory;
import eu.dnetlib.dhp.graph.utils.StreamingInputDocumentFactory;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.dhp.utils.saxon.SaxonTransformerFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpDocumentNotFoundException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;

1
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/utils/ContextMapper.java
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@ -1,6 +1,7 @@
package eu.dnetlib.dhp.graph.utils;
import com.google.common.base.Joiner;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import org.dom4j.Document;

7
pom.xml
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@ -129,6 +129,13 @@
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>jcl-over-slf4j</artifactId>
<version>1.7.25</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-lang3</artifactId>