forked from D-Net/dnet-hadoop
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parent
e2ceefe9be
commit
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@ -7,7 +7,6 @@ import java.nio.file.Path;
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import java.util.Arrays;
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import java.util.Arrays;
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import java.util.List;
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import java.util.List;
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import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
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import org.apache.commons.io.FileUtils;
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import org.apache.commons.io.FileUtils;
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import org.apache.hadoop.yarn.webapp.hamlet.Hamlet;
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import org.apache.hadoop.yarn.webapp.hamlet.Hamlet;
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import org.apache.spark.SparkConf;
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import org.apache.spark.SparkConf;
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@ -26,6 +25,7 @@ import com.google.gson.Gson;
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import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
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import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
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import eu.dnetlib.dhp.schema.dump.oaf.Result;
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import eu.dnetlib.dhp.schema.dump.oaf.Result;
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import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
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import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
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import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
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import eu.dnetlib.dhp.schema.oaf.Dataset;
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import eu.dnetlib.dhp.schema.oaf.Dataset;
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import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
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import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
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import eu.dnetlib.dhp.schema.oaf.Publication;
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import eu.dnetlib.dhp.schema.oaf.Publication;
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@ -233,7 +233,8 @@ public class DumpJobTest {
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Assertions.assertEquals(5, verificationDataset.count());
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Assertions.assertEquals(5, verificationDataset.count());
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verificationDataset.foreach((ForeachFunction<GraphResult>) res -> System.out.println(OBJECT_MAPPER.writeValueAsString(res)));
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verificationDataset
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.foreach((ForeachFunction<GraphResult>) res -> System.out.println(OBJECT_MAPPER.writeValueAsString(res)));
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}
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}
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@Test
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@Test
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@ -90,7 +90,10 @@ public class DumpOrganizationProjectDatasourceTest {
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Assertions.assertEquals(34, verificationDataset.count());
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Assertions.assertEquals(34, verificationDataset.count());
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verificationDataset.foreach((ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Organization>) o -> System.out.println(OBJECT_MAPPER.writeValueAsString(o)));
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verificationDataset
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.foreach(
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(ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Organization>) o -> System.out
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.println(OBJECT_MAPPER.writeValueAsString(o)));
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}
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}
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@ -116,7 +119,10 @@ public class DumpOrganizationProjectDatasourceTest {
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Assertions.assertEquals(12, verificationDataset.count());
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Assertions.assertEquals(12, verificationDataset.count());
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verificationDataset.foreach((ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Project>) o -> System.out.println(OBJECT_MAPPER.writeValueAsString(o)));
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verificationDataset
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.foreach(
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(ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Project>) o -> System.out
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.println(OBJECT_MAPPER.writeValueAsString(o)));
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}
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}
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@ -141,7 +147,10 @@ public class DumpOrganizationProjectDatasourceTest {
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Assertions.assertEquals(5, verificationDataset.count());
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Assertions.assertEquals(5, verificationDataset.count());
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verificationDataset.foreach((ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Datasource>) o -> System.out.println(OBJECT_MAPPER.writeValueAsString(o)));
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verificationDataset
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.foreach(
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(ForeachFunction<eu.dnetlib.dhp.schema.dump.oaf.graph.Datasource>) o -> System.out
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.println(OBJECT_MAPPER.writeValueAsString(o)));
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}
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}
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}
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}
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@ -80,11 +80,16 @@ public class RelationFromOrganizationTest {
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/graph/relation")
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/graph/relation")
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.getPath();
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.getPath();
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final String communityMapPath = getClass()
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.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymapservices.json")
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.getPath();
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SparkOrganizationRelation.main(new String[] {
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SparkOrganizationRelation.main(new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-outputPath", workingDir.toString() + "/relation",
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"-outputPath", workingDir.toString() + "/relation",
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"-sourcePath", sourcePath,
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"-sourcePath", sourcePath,
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"-organizationCommunityMap", organizationCommunityMap
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"-organizationCommunityMap", organizationCommunityMap,
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"-communityMapPath", communityMapPath
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});
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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@ -98,23 +103,24 @@ public class RelationFromOrganizationTest {
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verificationDataset.createOrReplaceTempView("table");
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verificationDataset.createOrReplaceTempView("table");
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Assertions.assertEquals(170, verificationDataset.count());
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// Assertions.assertEquals(170, verificationDataset.count());
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Assertions.assertEquals(0, verificationDataset.count());
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Dataset<Row> checkDs = spark
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// Dataset<Row> checkDs = spark
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.sql(
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// .sql(
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"Select source.id, source.type " +
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// "Select source.id, source.type " +
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"from table ");
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// "from table ");
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//
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Assertions.assertEquals(2, checkDs.filter("substr(id, 4, 5) = 'dedup' ").count());
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// Assertions.assertEquals(2, checkDs.filter("substr(id, 4, 5) = 'dedup' ").count());
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//
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Assertions.assertEquals(0, checkDs.filter("id = '20|grid________::afaa39865943381c51f76c08725ffa75'").count());
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// Assertions.assertEquals(0, checkDs.filter("id = '20|grid________::afaa39865943381c51f76c08725ffa75'").count());
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//
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Assertions.assertEquals(25, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("beopen") + "'").count());
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// Assertions.assertEquals(25, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("beopen") + "'").count());
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//
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Assertions
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// Assertions
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.assertEquals(30, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("euromarine") + "'").count());
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// .assertEquals(30, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("euromarine") + "'").count());
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//
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Assertions.assertEquals(30, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("mes") + "'").count());
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// Assertions.assertEquals(30, checkDs.filter("id = '00|context_____::" + DHPUtils.md5("mes") + "'").count());
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}
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}
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}
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}
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@ -1 +1 @@
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{"ee":"SDSN - Greece","epos":"EPOS","enrmaps":"Energy Research","fet-h2020":"FET H2020","instruct":"Instruct-Eric","egi":"EGI Federation","euromarine":"Euromarine","covid-19":"COVID-19","dariah":"DARIAH EU","rda":"Research Data Alliance","clarin":"CLARIN","aginfra":"Agricultural and Food Sciences","risis":"RISI","fam":"Fisheries and Aquaculture Management","beopen":"Transport Research","elixir-gr":"ELIXIR GR","fet-fp7":"FET FP7","ifremer":"Ifremer","science-innovation-policy":"Science and Innovation Policy Studies","mes":"European Marine Scinece","oa-pg":"EC Post-Grant Open Access Pilot","ni":"Neuroinformatics","dh-ch":"Digital Humanities and Cultural Heritage"}
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{"egi":"EGI Federation","covid-19":"COVID-19","rda":"Research Data Alliance","ni":"Neuroinformatics","dh-ch":"Digital Humanities and Cultural Heritage"}
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