From 5240ac3d7bdfeba3ce7f5bb2bbacab7fa8c84641 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Mon, 19 Sep 2022 11:02:18 +0200 Subject: [PATCH 1/6] [EOSC Tag] remove addition of eosc context for result with eosc if guidelines set --- .../java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java index 66e0c8af4f..ed2d192534 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java @@ -121,8 +121,7 @@ public class SparkEoscBulkTag implements Serializable { .getInstance() .stream() .anyMatch( - i -> (hostedByList.contains(i.getHostedby().getKey())) || - (value.getEoscifguidelines() != null && value.getEoscifguidelines().size() > 0)) + i -> (hostedByList.contains(i.getHostedby().getKey())) ) && !value.getContext().stream().anyMatch(c -> c.getId().equals("eosc"))) { Context context = new Context(); From 960cb861a0ace5556213016942ca0b05039632ca Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 23 Sep 2022 11:14:04 +0200 Subject: [PATCH 2/6] refactoring --- .../main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java index ed2d192534..c4b2122b45 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/eosc/SparkEoscBulkTag.java @@ -121,7 +121,7 @@ public class SparkEoscBulkTag implements Serializable { .getInstance() .stream() .anyMatch( - i -> (hostedByList.contains(i.getHostedby().getKey())) ) + i -> (hostedByList.contains(i.getHostedby().getKey()))) && !value.getContext().stream().anyMatch(c -> c.getId().equals("eosc"))) { Context context = new Context(); From 55da4d871509f5f1e71c5939298d49eac9d9d92b Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 23 Sep 2022 16:02:19 +0200 Subject: [PATCH 3/6] [BulkTagging] modifying code to represent constraints horizontally on all the results. Added subject to the set of field used to express the constraint. Modified resorces to test the new approach. Modified test calss --- .../dhp/bulktag/community/Community.java | 10 ++ .../community/CommunityConfiguration.java | 14 +++ .../CommunityConfigurationFactory.java | 12 ++ .../dhp/bulktag/community/Constraint.java | 9 ++ .../dhp/bulktag/community/ResultTagger.java | 107 +++++++----------- .../bulktag/community/TaggingConstants.java | 2 + .../dnetlib/dhp/bulktag/BulkTagJobTest.java | 37 ++++-- .../communityconfiguration/tagging_conf.xml | 5 +- .../dataset_10.json | 10 ++ .../dataset_10.json.gz | Bin 6883 -> 0 bytes 10 files changed, 134 insertions(+), 72 deletions(-) create mode 100644 dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/dataset_10.json delete mode 100644 dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/dataset_10.json.gz diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java index 8e76b57789..c5feb8d3ff 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java @@ -6,6 +6,7 @@ import java.util.ArrayList; import java.util.List; import com.google.gson.Gson; +import org.apache.avro.generic.GenericData; /** Created by miriam on 01/08/2018. */ public class Community implements Serializable { @@ -14,6 +15,7 @@ public class Community implements Serializable { private List subjects = new ArrayList<>(); private List providers = new ArrayList<>(); private List zenodoCommunities = new ArrayList<>(); + private SelectionConstraints constraints = new SelectionConstraints(); public String toJson() { final Gson g = new Gson(); @@ -57,4 +59,12 @@ public class Community implements Serializable { public void setZenodoCommunities(List zenodoCommunities) { this.zenodoCommunities = zenodoCommunities; } + + public SelectionConstraints getConstraints() { + return constraints; + } + + public void setConstraints(SelectionConstraints constraints) { + this.constraints = constraints; + } } diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java index 5d92f5ab6e..8e34ccebfb 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java @@ -24,6 +24,8 @@ public class CommunityConfiguration implements Serializable { private Map>> datasourceMap = new HashMap<>(); // map zenodocommunityid -> communityid private Map>> zenodocommunityMap = new HashMap<>(); + // map communityid -> selectionconstraints + private Map selectionConstraintsMap = new HashMap<>(); public Map>> getSubjectMap() { return subjectMap; @@ -51,6 +53,14 @@ public class CommunityConfiguration implements Serializable { this.zenodocommunityMap = zenodocommunityMap; } + public Map getSelectionConstraintsMap() { + return selectionConstraintsMap; + } + + public void setSelectionConstraintsMap(Map selectionConstraintsMap) { + this.selectionConstraintsMap = selectionConstraintsMap; + } + CommunityConfiguration(final Map communities) { this.communities = communities; init(); @@ -67,6 +77,9 @@ public class CommunityConfiguration implements Serializable { if (zenodocommunityMap == null) { zenodocommunityMap = Maps.newHashMap(); } + if(selectionConstraintsMap == null){ + selectionConstraintsMap = Maps.newHashMap(); + } for (Community c : getCommunities().values()) { // get subjects @@ -87,6 +100,7 @@ public class CommunityConfiguration implements Serializable { new Pair<>(id, zc.getSelCriteria()), zenodocommunityMap); } + selectionConstraintsMap.put(id, c.getConstraints()); } } diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java index 822d350783..7a43ca476a 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java @@ -85,9 +85,21 @@ public class CommunityConfigurationFactory { c.setSubjects(parseSubjects(node)); c.setProviders(parseDatasources(node)); c.setZenodoCommunities(parseZenodoCommunities(node)); + c.setConstraints(parseConstrains(node)); return c; } + private static SelectionConstraints parseConstrains(Node node) { + Node aconstraints = node.selectSingleNode("./advancedConstraints"); + if(aconstraints == null){ + return null; + } + SelectionConstraints selectionConstraints = new Gson().fromJson(aconstraints.getText(), SelectionConstraints.class); + + selectionConstraints.setSelection(resolver); + return selectionConstraints; + } + private static List parseSubjects(final Node node) { final List subjects = Lists.newArrayList(); diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Constraint.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Constraint.java index 9002e718f5..ed58cc14d9 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Constraint.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Constraint.java @@ -11,6 +11,7 @@ public class Constraint implements Serializable { private String verb; private String field; private String value; +// private String element; private Selection selection; public String getVerb() { @@ -50,4 +51,12 @@ public class Constraint implements Serializable { public boolean verifyCriteria(String metadata) { return selection.apply(metadata); } + +// public String getElement() { +// return element; +// } +// +// public void setElement(String element) { +// this.element = element; +// } } diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java index 71a2b35252..ccb69a97d0 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java @@ -9,6 +9,9 @@ import java.util.*; import java.util.stream.Collectors; import java.util.stream.Stream; +import eu.dnetlib.dhp.schema.common.ModelConstants; +import eu.dnetlib.dhp.schema.common.ModelSupport; +import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; import org.apache.commons.lang3.StringUtils; import com.google.gson.Gson; @@ -95,13 +98,6 @@ public class ResultTagger implements Serializable { } -// result -// .getInstance() -// .stream() -// .map(i -> new Pair<>(i.getCollectedfrom().getKey(), i.getHostedby().getKey())) -// .flatMap(p -> Stream.of(p.getFst(), p.getSnd())) -// .map(s -> StringUtils.substringAfter(s, "|")) -// .collect(Collectors.toCollection(HashSet::new)) tmp .forEach( dsId -> datasources @@ -135,6 +131,19 @@ public class ResultTagger implements Serializable { communities.addAll(czenodo); + /* Tagging for Advanced Constraints */ + final Set aconstraints = new HashSet<>(); + + conf.getSelectionConstraintsMap().keySet() + .forEach(communityId -> { + if(conf.getSelectionConstraintsMap().get(communityId) != null && + conf.getSelectionConstraintsMap().get(communityId) + .getCriteria().stream().anyMatch(crit -> crit.verifyCriteria(param))) + aconstraints.add(communityId); + }); + + communities.addAll(aconstraints); + clearContext(result); /* Verify if there is something to bulktag */ @@ -152,30 +161,24 @@ public class ResultTagger implements Serializable { dataInfoList = new ArrayList<>(); c.setDataInfo(dataInfoList); } - if (subjects.contains(c.getId())) + if (subjects.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_SUBJECT, - CLASS_NAME_BULKTAG_SUBJECT, - TAGGING_TRUST)); - if (datasources.contains(c.getId())) + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + if (datasources.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_DATASOURCE, - CLASS_NAME_BULKTAG_DATASOURCE, - TAGGING_TRUST)); - if (czenodo.contains(c.getId())) + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + if (czenodo.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_CZENODO, - CLASS_NAME_BULKTAG_ZENODO, - TAGGING_TRUST)); + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + if (aconstraints.contains(c)) + dataInfoList + .add( + OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + } }); @@ -195,28 +198,22 @@ public class ResultTagger implements Serializable { List dataInfoList = new ArrayList<>(); if (subjects.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_SUBJECT, - CLASS_NAME_BULKTAG_SUBJECT, - TAGGING_TRUST)); + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); if (datasources.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_DATASOURCE, - CLASS_NAME_BULKTAG_DATASOURCE, - TAGGING_TRUST)); + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); if (czenodo.contains(c)) dataInfoList - .add( - getDataInfo( - BULKTAG_DATA_INFO_TYPE, - CLASS_ID_CZENODO, - CLASS_NAME_BULKTAG_ZENODO, - TAGGING_TRUST)); + .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + if (aconstraints.contains(c)) + dataInfoList + .add( + OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils.qualifier(CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + context.setDataInfo(dataInfoList); return context; }) @@ -226,22 +223,4 @@ public class ResultTagger implements Serializable { return result; } - public static DataInfo getDataInfo( - String inference_provenance, String inference_class_id, String inference_class_name, String trust) { - DataInfo di = new DataInfo(); - di.setInferred(true); - di.setInferenceprovenance(inference_provenance); - di.setProvenanceaction(getQualifier(inference_class_id, inference_class_name)); - di.setTrust(trust); - return di; - } - - public static Qualifier getQualifier(String inference_class_id, String inference_class_name) { - Qualifier pa = new Qualifier(); - pa.setClassid(inference_class_id); - pa.setClassname(inference_class_name); - pa.setSchemeid(DNET_PROVENANCE_ACTIONS); - pa.setSchemename(DNET_PROVENANCE_ACTIONS); - return pa; - } } diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/TaggingConstants.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/TaggingConstants.java index 8274e26c9a..aea21f8e5e 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/TaggingConstants.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/TaggingConstants.java @@ -11,12 +11,14 @@ public class TaggingConstants { public static final String CLASS_ID_SUBJECT = "community:subject"; public static final String CLASS_ID_DATASOURCE = "community:datasource"; public static final String CLASS_ID_CZENODO = "community:zenodocommunity"; + public static final String CLASS_ID_ADVANCED_CONSTRAINT = "community:advconstraint"; public static final String ZENODO_COMMUNITY_INDICATOR = "zenodo.org/communities/"; public static final String CLASS_NAME_BULKTAG_SUBJECT = "Bulktagging for Community - Subject"; public static final String CLASS_NAME_BULKTAG_DATASOURCE = "Bulktagging for Community - Datasource"; public static final String CLASS_NAME_BULKTAG_ZENODO = "Bulktagging for Community - Zenodo"; + public static final String CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT = "Bulktagging for Community - Advanced Constraints"; public static final String TAGGING_TRUST = "0.8"; } diff --git a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java index 07299f01a2..0212f4a49d 100644 --- a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java +++ b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java @@ -6,7 +6,16 @@ import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.ZENODO_COMMUNITY import java.io.IOException; import java.nio.file.Files; import java.nio.file.Path; +import java.util.ArrayList; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import com.google.gson.Gson; +import com.jayway.jsonpath.DocumentContext; +import com.jayway.jsonpath.JsonPath; +import eu.dnetlib.dhp.bulktag.community.ProtoMap; +import eu.dnetlib.dhp.schema.oaf.*; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; @@ -24,11 +33,6 @@ import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; -import eu.dnetlib.dhp.schema.oaf.Dataset; -import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct; -import eu.dnetlib.dhp.schema.oaf.Publication; -import eu.dnetlib.dhp.schema.oaf.Software; - public class BulkTagJobTest { private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); @@ -39,7 +43,8 @@ public class BulkTagJobTest { + " \"title\" : \"$['title'][*]['value']\"," + " \"orcid\" : \"$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']\"," + " \"contributor\" : \"$['contributor'][*]['value']\"," - + " \"description\" : \"$['description'][*]['value']\"}"; + + " \"description\" : \"$['description'][*]['value']\", " + +" \"subject\" :\"$['subject'][*]['value']\" }"; private static SparkSession spark; @@ -763,10 +768,28 @@ public class BulkTagJobTest { org.apache.spark.sql.Dataset idExplodeCommunity = spark.sql(query); idExplodeCommunity.show(false); - Assertions.assertEquals(3, idExplodeCommunity.count()); + Assertions.assertEquals(4, idExplodeCommunity.count()); Assertions .assertEquals( 3, idExplodeCommunity.filter("provenance = 'community:datasource'").count()); + Assertions + .assertEquals( + 1, idExplodeCommunity.filter("provenance = 'community:advconstraint'").count()); } + +// @Test +// void test1(){ +// ProtoMap params = new Gson().fromJson(pathMap, ProtoMap.class); +// HashMap param = new HashMap<>(); +// for (String key : params.keySet()) { +// try { +// param.put(key, jsonContext.read(params.get(key))); +// } catch (com.jayway.jsonpath.PathNotFoundException e) { +// param.put(key, new ArrayList<>()); +// } +// } +// return param; +// } +// } } diff --git a/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/communityconfiguration/tagging_conf.xml b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/communityconfiguration/tagging_conf.xml index d4c83438b0..06c57511d3 100644 --- a/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/communityconfiguration/tagging_conf.xml +++ b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/communityconfiguration/tagging_conf.xml @@ -1193,6 +1193,9 @@ + {"criteria":[{"constraint":[{"verb":"equals_ignorecase","field":"subject","value":"ciencias de la comunicación"}, + {"verb":"equals","field":"subject","value":"Miriam"}]}, + {"constraint":[{"verb":"equals","field":"subject","value":"miriam"}]}]} Sustainability-oriented science policy STI policies @@ -1316,7 +1319,7 @@ opendoar____::358aee4cc897452c00244351e4d91f69 {"criteria":[{"constraint":[{"verb":"contains_ignorecase","field":"title","value":"COVID-19"}]}, {"constraint":[{"verb":"contains_ignorecase","field":"title","value":"SARS-CoV-2"}]}, - {"constraint":[{"verb":"contains_ignorecase","field":"title","value":"2019-nCoV"}]}]} + {"constraint":[{"verb":"contains_ignorecase","field":"title","value":"2019-nCoV"}}]} diff --git a/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/dataset_10.json b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/dataset_10.json new file mode 100644 index 0000000000..1683434015 --- /dev/null +++ b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/dataset_10.json @@ -0,0 +1,10 @@ +{"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1585055868909,"id":"50|od______3989::02dd5d2c222191b0b9bd4f33c8e96529","originalId":["od______3989::02dd5d2c222191b0b9bd4f33c8e96529"],"collectedfrom":[{"key":"opendoar____::3989","value":"Depósito Digital 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Jorge","name":"Jorge","surname":"Gallardo-Camacho","rank":1,"pid":null,"affiliation":null},{"fullname":"Trujillo Fernández, José Ramón","name":"José Ramón","surname":"Trujillo Fernández","rank":2,"pid":null,"affiliation":null},{"fullname":"Jorge Alonso, Ana","name":"Ana","surname":"Jorge Alonso","rank":3,"pid":null,"affiliation":null}],"resulttype":{"classid":"dataset","classname":"dataset","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"esl/spa","classname":"Spanish","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[{"value":"Ciencias de la 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zs8T&7pkoQldddxHq}8B;FEIbxQauYgL|51NG!)~6tQ3$b;Drf zIbC;viDm9&4&7J%@R&oM-|71gyVB0@jQpn}4prhbPaHD2+innt93O@4Vn!uP9J0hA zo0;ejI7w_qhU;5O7Knw*^-QvKRECAH*gi zJQy%U?$ua`woyOvQU3%eBL#p*Wp?C?J(S;@$W$U~^i6|3>nKv2uLQC}FIeHE{ zC0Nd6sMKLog4vW{HYJ!%3HFIiur?pcABos!d1fE8;aHy8LGaA_2hB6H9@+BDEYIu_ zd1jvDxVQ1lqQS`R!k_&?z`}miWr629y@;`($9ki_+q#=)c5n5=BAvsY?lRd4=eqTZ9uuEaKW zHpI|ioYVqwAVAoBNr!@kp~+ehngrohm1V;MaTrl(wK=UeXI|p@`jC-Rx+J(#w4vue z7Pk9`p3h=JcH>^l?y^ogk%%nUc_lF8gvp7(b|eHOF$#cTIZV$G2o;E_XTM=(uw<{$ zDpjGeOvPErc z5#uJ_tv7o_BPZ%ociQjK$m{n4p9L%$(ykwPL#Nxj?`DsCs~=?CWaK{VeEy&_=nbAQ zZerwVI&Lx;?Tnk?0sa0f*B|$~W7n~96B{?N2lW4dvqXJ65)2==EzSxFW7Y0R+Ox`pgI6T| z1`_Ebix!S%$AtnRBl99bcV*GA2l6dS`%)n;Xo9djD|kl!PGz`yCqowF!F(05uDvP} zipLk#*~h%P8fMQI7|WhGM041mJuwk!odvsTHL-%_6al7m5%GihX+KensU46J84^?BS1&cX$F;-5|%vk1tZg_L4-65~={*={wywRt+ zMkf-wKV_~0Lknq>mozEhm*-G$b)6o4MrFXHuym0J4TpUWb-Aw9silk5q8^qmV(B6u dD_sPmf`?5Pu^!pdMc)4D{{S7|8zsb00RW%H8sGo` From 3e6b0f58bb511c36a02fc297d92946499f727564 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 23 Sep 2022 16:47:19 +0200 Subject: [PATCH 4/6] [BulkTagging] changed the query to the IS to get also the information for the advancedConstraint from the profile --- .../dnetlib/dhp/bulktag/community/QueryInformationSystem.java | 3 +++ 1 file changed, 3 insertions(+) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java index 89cf5beffe..cde8d7d11f 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java @@ -61,6 +61,9 @@ public class QueryInformationSystem { + " " + " } " + " " + + "" + +"{$x//CONFIGURATION/context/param[./@name='advancedConstaint']/text()} " + + "" + " "; public static CommunityConfiguration getCommunityConfiguration(final String isLookupUrl) From ca216a92ad8db5bd658e45c72f93ed861f27a7cb Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 23 Sep 2022 17:06:07 +0200 Subject: [PATCH 5/6] [BulkTagging] changed the query to the IS to insert values for FOS and SDG as subject in the configuration used for the tagging --- .../dhp/bulktag/community/QueryInformationSystem.java | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java index cde8d7d11f..9803c5e631 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java @@ -18,6 +18,8 @@ public class QueryInformationSystem { + " let $datasources := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::contentproviders')]/concept " + " let $organizations := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::resultorganizations')]/concept " + " let $communities := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::zenodocommunities')]/concept " + + " let $fos := $x//CONFIGURATION/context/param[./@name='fos']/text() " + + " let $sdg := $x//CONFIGURATION/context/param[./@name='sdg']/text() " + "let $zenodo := $x//param[./@name='zenodoCommunity']/text() " + " where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] and $x//context/param[./@name = 'status']/text() != 'hidden' " @@ -28,6 +30,12 @@ public class QueryInformationSystem { + " {for $y in tokenize($subj,',') " + " return " + " {$y}} " + + " {for $y in tokenize($fos,',') " + + " return " + + " {$y}} " + + " {for $y in tokenize($sdg,',') " + + " return " + + " {$y}} " + " " + " " + " {for $d in $datasources " @@ -62,7 +70,7 @@ public class QueryInformationSystem { + " } " + " " + "" - +"{$x//CONFIGURATION/context/param[./@name='advancedConstaint']/text()} " + +"{$x//CONFIGURATION/context/param[./@name='advancedConstraint']/text()} " + "" + " "; From 57dbeb08d2e07bacd2ba7c559e2f8fc9dace0ee1 Mon Sep 17 00:00:00 2001 From: Claudio Atzori Date: Tue, 27 Sep 2022 14:55:10 +0200 Subject: [PATCH 6/6] code formatting --- .../dhp/bulktag/community/Community.java | 3 +- .../community/CommunityConfiguration.java | 2 +- .../CommunityConfigurationFactory.java | 5 +- .../community/QueryInformationSystem.java | 22 ++-- .../dhp/bulktag/community/ResultTagger.java | 116 +++++++++++++----- .../dnetlib/dhp/bulktag/BulkTagJobTest.java | 17 +-- .../clean/country/CleanCountrySparkJob.java | 7 +- .../raw/MigrateDbEntitiesApplication.java | 3 +- 8 files changed, 121 insertions(+), 54 deletions(-) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java index c5feb8d3ff..3db584c761 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/Community.java @@ -5,9 +5,10 @@ import java.io.Serializable; import java.util.ArrayList; import java.util.List; -import com.google.gson.Gson; import org.apache.avro.generic.GenericData; +import com.google.gson.Gson; + /** Created by miriam on 01/08/2018. */ public class Community implements Serializable { diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java index 8e34ccebfb..66407a4b37 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfiguration.java @@ -77,7 +77,7 @@ public class CommunityConfiguration implements Serializable { if (zenodocommunityMap == null) { zenodocommunityMap = Maps.newHashMap(); } - if(selectionConstraintsMap == null){ + if (selectionConstraintsMap == null) { selectionConstraintsMap = Maps.newHashMap(); } diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java index 7a43ca476a..52ca606fc7 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/CommunityConfigurationFactory.java @@ -91,10 +91,11 @@ public class CommunityConfigurationFactory { private static SelectionConstraints parseConstrains(Node node) { Node aconstraints = node.selectSingleNode("./advancedConstraints"); - if(aconstraints == null){ + if (aconstraints == null) { return null; } - SelectionConstraints selectionConstraints = new Gson().fromJson(aconstraints.getText(), SelectionConstraints.class); + SelectionConstraints selectionConstraints = new Gson() + .fromJson(aconstraints.getText(), SelectionConstraints.class); selectionConstraints.setSelection(resolver); return selectionConstraints; diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java index 9803c5e631..f06c0d47a7 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/QueryInformationSystem.java @@ -18,8 +18,8 @@ public class QueryInformationSystem { + " let $datasources := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::contentproviders')]/concept " + " let $organizations := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::resultorganizations')]/concept " + " let $communities := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::zenodocommunities')]/concept " - + " let $fos := $x//CONFIGURATION/context/param[./@name='fos']/text() " - + " let $sdg := $x//CONFIGURATION/context/param[./@name='sdg']/text() " + + " let $fos := $x//CONFIGURATION/context/param[./@name='fos']/text() " + + " let $sdg := $x//CONFIGURATION/context/param[./@name='sdg']/text() " + "let $zenodo := $x//param[./@name='zenodoCommunity']/text() " + " where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] and $x//context/param[./@name = 'status']/text() != 'hidden' " @@ -30,12 +30,12 @@ public class QueryInformationSystem { + " {for $y in tokenize($subj,',') " + " return " + " {$y}} " - + " {for $y in tokenize($fos,',') " - + " return " - + " {$y}} " - + " {for $y in tokenize($sdg,',') " - + " return " - + " {$y}} " + + " {for $y in tokenize($fos,',') " + + " return " + + " {$y}} " + + " {for $y in tokenize($sdg,',') " + + " return " + + " {$y}} " + " " + " " + " {for $d in $datasources " @@ -69,9 +69,9 @@ public class QueryInformationSystem { + " " + " } " + " " - + "" - +"{$x//CONFIGURATION/context/param[./@name='advancedConstraint']/text()} " - + "" + + "" + + "{$x//CONFIGURATION/context/param[./@name='advancedConstraint']/text()} " + + "" + " "; public static CommunityConfiguration getCommunityConfiguration(final String isLookupUrl) diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java index ccb69a97d0..ee75bf955a 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java @@ -9,16 +9,16 @@ import java.util.*; import java.util.stream.Collectors; import java.util.stream.Stream; -import eu.dnetlib.dhp.schema.common.ModelConstants; -import eu.dnetlib.dhp.schema.common.ModelSupport; -import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; import org.apache.commons.lang3.StringUtils; import com.google.gson.Gson; import com.jayway.jsonpath.DocumentContext; import com.jayway.jsonpath.JsonPath; +import eu.dnetlib.dhp.schema.common.ModelConstants; +import eu.dnetlib.dhp.schema.common.ModelSupport; import eu.dnetlib.dhp.schema.oaf.*; +import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils; /** Created by miriam on 02/08/2018. */ public class ResultTagger implements Serializable { @@ -134,13 +134,19 @@ public class ResultTagger implements Serializable { /* Tagging for Advanced Constraints */ final Set aconstraints = new HashSet<>(); - conf.getSelectionConstraintsMap().keySet() - .forEach(communityId -> { - if(conf.getSelectionConstraintsMap().get(communityId) != null && - conf.getSelectionConstraintsMap().get(communityId) - .getCriteria().stream().anyMatch(crit -> crit.verifyCriteria(param))) - aconstraints.add(communityId); - }); + conf + .getSelectionConstraintsMap() + .keySet() + .forEach(communityId -> { + if (conf.getSelectionConstraintsMap().get(communityId) != null && + conf + .getSelectionConstraintsMap() + .get(communityId) + .getCriteria() + .stream() + .anyMatch(crit -> crit.verifyCriteria(param))) + aconstraints.add(communityId); + }); communities.addAll(aconstraints); @@ -163,21 +169,48 @@ public class ResultTagger implements Serializable { } if (subjects.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, + DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (datasources.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, DNET_PROVENANCE_ACTIONS, + DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (czenodo.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, + DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (aconstraints.contains(c)) dataInfoList - .add( - OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, + DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); } }); @@ -198,21 +231,48 @@ public class ResultTagger implements Serializable { List dataInfoList = new ArrayList<>(); if (subjects.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_SUBJECT, CLASS_NAME_BULKTAG_SUBJECT, DNET_PROVENANCE_ACTIONS, + DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (datasources.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_DATASOURCE, CLASS_NAME_BULKTAG_DATASOURCE, + DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (czenodo.contains(c)) dataInfoList - .add(OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_CZENODO, CLASS_NAME_BULKTAG_ZENODO, DNET_PROVENANCE_ACTIONS, + DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); if (aconstraints.contains(c)) dataInfoList - .add( - OafMapperUtils.dataInfo(false, BULKTAG_DATA_INFO_TYPE, true, false, - OafMapperUtils.qualifier(CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), TAGGING_TRUST)); + .add( + OafMapperUtils + .dataInfo( + false, BULKTAG_DATA_INFO_TYPE, true, false, + OafMapperUtils + .qualifier( + CLASS_ID_ADVANCED_CONSTRAINT, CLASS_NAME_BULKTAG_ADVANCED_CONSTRAINT, + DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), + TAGGING_TRUST)); context.setDataInfo(dataInfoList); return context; diff --git a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java index 0212f4a49d..def524156b 100644 --- a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java +++ b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java @@ -11,11 +11,6 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import com.google.gson.Gson; -import com.jayway.jsonpath.DocumentContext; -import com.jayway.jsonpath.JsonPath; -import eu.dnetlib.dhp.bulktag.community.ProtoMap; -import eu.dnetlib.dhp.schema.oaf.*; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; @@ -32,6 +27,12 @@ import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; +import com.google.gson.Gson; +import com.jayway.jsonpath.DocumentContext; +import com.jayway.jsonpath.JsonPath; + +import eu.dnetlib.dhp.bulktag.community.ProtoMap; +import eu.dnetlib.dhp.schema.oaf.*; public class BulkTagJobTest { @@ -44,7 +45,7 @@ public class BulkTagJobTest { + " \"orcid\" : \"$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']\"," + " \"contributor\" : \"$['contributor'][*]['value']\"," + " \"description\" : \"$['description'][*]['value']\", " - +" \"subject\" :\"$['subject'][*]['value']\" }"; + + " \"subject\" :\"$['subject'][*]['value']\" }"; private static SparkSession spark; @@ -774,8 +775,8 @@ public class BulkTagJobTest { .assertEquals( 3, idExplodeCommunity.filter("provenance = 'community:datasource'").count()); Assertions - .assertEquals( - 1, idExplodeCommunity.filter("provenance = 'community:advconstraint'").count()); + .assertEquals( + 1, idExplodeCommunity.filter("provenance = 'community:advconstraint'").count()); } // @Test diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java index 30991e9d7a..c150c63df1 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/clean/country/CleanCountrySparkJob.java @@ -10,7 +10,6 @@ import java.util.stream.Collectors; import javax.swing.text.html.Option; -import eu.dnetlib.dhp.schema.oaf.utils.PidType; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FilterFunction; @@ -33,6 +32,7 @@ import eu.dnetlib.dhp.oa.graph.clean.CleanContextSparkJob; import eu.dnetlib.dhp.schema.oaf.Country; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.StructuredProperty; +import eu.dnetlib.dhp.schema.oaf.utils.PidType; public class CleanCountrySparkJob implements Serializable { private static final Logger log = LoggerFactory.getLogger(CleanCountrySparkJob.class); @@ -113,7 +113,10 @@ public class CleanCountrySparkJob implements Serializable { if (r .getPid() .stream() - .anyMatch(p -> p.getQualifier().getClassid() + .anyMatch( + p -> p + .getQualifier() + .getClassid() .equals(PidType.doi) && pidInParam(p.getValue(), verifyParam))) { r .setCountry( diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java index 2b1c257ad4..c69a7a6ffa 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java @@ -422,7 +422,8 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i final Relation r2 = OafMapperUtils .getRelation( - orgId, dsId, DATASOURCE_ORGANIZATION, PROVISION, PROVIDES, collectedFrom, info, lastUpdateTimestamp); + orgId, dsId, DATASOURCE_ORGANIZATION, PROVISION, PROVIDES, collectedFrom, info, + lastUpdateTimestamp); return Arrays.asList(r1, r2); } catch (final Exception e) {