From adf0ca5aa73f5e38a3fc42fe7d0f297cc7ebefb5 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Wed, 5 Aug 2020 14:24:43 +0200 Subject: [PATCH] test to send is from hdfs --- .../dhp/oa/graph/dump/ZenodoUploadTest.java | 56 ++++++++++++++++++- 1 file changed, 55 insertions(+), 1 deletion(-) diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java index 88d85b4db..17b885b40 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java +++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java @@ -17,7 +17,7 @@ public class ZenodoUploadTest { private static String workingDir; private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions"; - private final String ACCESS_TOKEN = ""; + private final String ACCESS_TOKEN = "5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe"; @BeforeAll public static void beforeAll() throws IOException { @@ -83,4 +83,58 @@ public class ZenodoUploadTest { } + @Test + public void sendAsInputStream() throws IOException { + CommunityMap communityMap = new CommunityMap(); + communityMap.put("ni", "Neuroinformatics"); + communityMap.put("dh-ch", "Digital Humanities and Cultural Heritage"); + LocalFileSystem fs = FileSystem.getLocal(new Configuration()); + + fs + .copyFromLocalFile( + false, new Path(getClass() + .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni") + .getPath()), + new Path(workingDir + "/zenodo/ni/ni")); + fs + .copyFromLocalFile( + false, new Path(getClass() + .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/dh-ch") + .getPath()), + new Path(workingDir + "/zenodo/dh-ch/dh-ch")); + + APIClient client = new APIClient(URL_STRING, + ACCESS_TOKEN); + client.connect(); + + // the second boolean parameter here sets the recursion to true + RemoteIterator fileStatusListIterator = fs + .listFiles( + new Path(workingDir + "/zenodo"), true); + while (fileStatusListIterator.hasNext()) { + LocatedFileStatus fileStatus = fileStatusListIterator.next(); + + String p_string = fileStatus.getPath().toString(); + + int index = p_string.lastIndexOf("/"); + String community = p_string.substring(0, index); + community = community.substring(community.lastIndexOf("/") + 1); + String community_name = communityMap.get(community).replace(" ", "_"); + //fs.copyToLocalFile(fileStatus.getPath(), new Path("/tmp/" + community_name)); + System.out.println(community); + + //File f = new File("/tmp/" + community_name); + FSDataInputStream inputStream = fs.open(fileStatus.getPath()); + System.out.println(client.uploadIS(inputStream, community_name)); + + } + + String metadata = "{\"metadata\":{\"access_right\":\"open\",\"communities\":[{\"identifier\":\"openaire-research-graph\"}],\"creators\":[{\"affiliation\":\"CNR - ISTI\",\"name\":\"Manghi, Paolo\",\"orcid\":\"0000-0001-7291-3210\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Atzori, Claudio\",\"orcid\":\"0000-0001-9613-6639\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Bardi, Alessia\",\"orcid\":\"0000-0002-1112-1292\"},{\"affiliation\":\"ISTI - CNR\",\"name\":\"Baglioni, Miriam\",\"orcid\":\"0000-0002-2273-9004\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Shirrwagen, Jochen\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Dimitropoulos, Harry\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"La Bruzzo, Sandro\",\"orcid\":\"0000-0003-2855-1245\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Foufoulas, Ioannis\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Löhden, Aenne\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Bäcker, Amelie\",\"orcid\":\"0000-0001-6015-2063\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Mannocci, Andrea\",\"orcid\":\"0000-0002-5193-7851\"},{\"affiliation\":\"University of Warsaw\",\"name\":\"Horst, Marek\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Czerniak, Andreas\",\"orcid\":\"0000-0003-3883-4169\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kiatropoulou, Katerina\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kokogiannaki, Argiro\",\"orcid\":\"0000-0002-3880-0244\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"De Bonis, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Artini, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Ottonello, Enrico\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Lempesis, Antonis\"},{\"affiliation\":\"CERN\",\"name\":\"Ioannidis, Alexandros\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Summan, Friedrich\"}],\"description\":\"\\u003cp\\u003eThis dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE\\u003c/p\\u003e. \\u003cp\\u003eEach dataset is a zip containing a file with one json per line. Each json is compliant to the schema available at XXXX\\u003c/p\\u003e Note that the file that is offered is not a typical json file: each line contains a separate, self-contained json object. For more information please see http://jsonlines.org\",\"grants\":[{\"id\":\"777541\"},{\"id\":\"824091\"},{\"id\":\"824323\"}],\"keywords\":[\"Open Science\",\"Scholarly Communication\",\"Information Science\"],\"language\":\"eng\",\"license\":\"CC-BY-4.0\",\"title\":\"OpenAIRE Research Graph: Dumps for research communities and initiatives.\",\"upload_type\":\"dataset\",\"version\":\"1.0\"}}"; + + System.out.println(client.sendMretadata(metadata)); + + System.out.println(client.publish()); + + } + }