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Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop

This commit is contained in:
Michele Artini 2020-02-25 16:00:51 +01:00
parent 93665773ea 6a73fd5da5
commit 689908b2e9
1 changed files with 28 additions and 25 deletions
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53
dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/graph/utils/XmlRecordFactory.java
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@ -43,8 +43,6 @@ public class XmlRecordFactory implements Serializable {
private String schemaLocation;
private Set<String> contextes = Sets.newHashSet();
private boolean indent = false;
public XmlRecordFactory(
@ -59,15 +57,18 @@ public class XmlRecordFactory implements Serializable {
}
public String build(final JoinedEntity je) {
final Set<String> contexts = Sets.newHashSet();
final OafEntity entity = je.getEntity();
TemplateFactory templateFactory = new TemplateFactory();
try {
final List<String> metadata = metadata(je.getType(), entity);
final List<String> metadata = metadata(je.getType(), entity, contexts);
// rels has to be processed before the contexts because they enrich the contextMap with the funding info.
final List<String> relations = listRelations(je, templateFactory);
final List<String> relations = listRelations(je, templateFactory, contexts);
metadata.addAll(buildContexts(getMainType(je.getType())));
metadata.addAll(buildContexts(getMainType(je.getType()), contexts));
metadata.add(parseDataInfo(entity.getDataInfo()));
final String body = templateFactory.buildBody(
@ -97,10 +98,11 @@ public class XmlRecordFactory implements Serializable {
}
}
private List<String> metadata(final String type, final OafEntity entity) {
private List<String> metadata(final String type, final OafEntity entity, final Set<String> contexts) {
final List<String> metadata = Lists.newArrayList();
if (entity.getCollectedfrom() != null) {
metadata.addAll(entity.getCollectedfrom()
.stream()
@ -123,6 +125,17 @@ public class XmlRecordFactory implements Serializable {
if (GraphMappingUtils.isResult(type)) {
final Result r = (Result) entity;
if (r.getContext() != null) {
contexts.addAll(r.getContext()
.stream()
.map(c -> c.getId())
.collect(Collectors.toList()));
/* FIXME: Workaround for CLARIN mining issue: #3670#note-29 */
if (contexts.contains("dh-ch::subcommunity::2")) {
contexts.add("clarin");
}
}
if (r.getTitle() != null) {
metadata.addAll(r.getTitle()
.stream()
@ -235,16 +248,6 @@ public class XmlRecordFactory implements Serializable {
}
metadata.add(mapQualifier("bestaccessright", getBestAccessright(r)));
if (r.getContext() != null) {
contextes.addAll(r.getContext()
.stream()
.map(c -> c.getId())
.collect(Collectors.toList()));
if (contextes.contains("dh-ch::subcommunity::2")) {
contextes.add("clarin");
}
}
}
switch (EntityType.valueOf(type)) {
@ -618,7 +621,7 @@ public class XmlRecordFactory implements Serializable {
return bestAccessRight;
}
private List<String> listRelations(final JoinedEntity je, TemplateFactory templateFactory) {
private List<String> listRelations(final JoinedEntity je, TemplateFactory templateFactory, final Set<String> contexts) {
final List<String> rels = Lists.newArrayList();
for (final Tuple2 link : je.getLinks()) {
@ -699,7 +702,7 @@ public class XmlRecordFactory implements Serializable {
if (re.getFundingtree() != null) {
metadata.addAll(re.getFundingtree()
.stream()
.peek(ft -> fillContextMap(ft))
.peek(ft -> fillContextMap(ft, contexts))
.map(ft -> getRelFundingTree(ft))
.collect(Collectors.toList()));
}
@ -807,14 +810,14 @@ public class XmlRecordFactory implements Serializable {
.collect(Collectors.toList()) : Lists.newArrayList();
}
private List<String> buildContexts(final String type) {
private List<String> buildContexts(final String type, final Set<String> contexts) {
final List<String> res = Lists.newArrayList();
if ((contextMapper != null) && !contextMapper.isEmpty() && MainEntityType.result.toString().equals(type)) {
XMLTag document = XMLDoc.newDocument(true).addRoot("contextRoot");
for (final String context : contextes) {
for (final String context : contexts) {
String id = "";
for (final String token : Splitter.on("::").split(context)) {
@ -882,7 +885,7 @@ public class XmlRecordFactory implements Serializable {
return buffer.toString();
}
private void fillContextMap(final String xmlTree) {
private void fillContextMap(final String xmlTree, final Set<String> contexts) {
Document fundingPath;
try {
@ -896,7 +899,7 @@ public class XmlRecordFactory implements Serializable {
if (funder != null) {
final String funderShortName = funder.valueOf("./shortname");
contextes.add(funderShortName);
contexts.add(funderShortName);
contextMapper.put(funderShortName, new ContextDef(funderShortName, funder.valueOf("./name"), "context", "funding"));
final Node level0 = fundingPath.selectSingleNode("//funding_level_0");
@ -905,17 +908,17 @@ public class XmlRecordFactory implements Serializable {
contextMapper.put(level0Id, new ContextDef(level0Id, level0.valueOf("./description"), "category", ""));
final Node level1 = fundingPath.selectSingleNode("//funding_level_1");
if (level1 == null) {
contextes.add(level0Id);
contexts.add(level0Id);
} else {
final String level1Id = Joiner.on("::").join(level0Id, level1.valueOf("./name"));
contextMapper.put(level1Id, new ContextDef(level1Id, level1.valueOf("./description"), "concept", ""));
final Node level2 = fundingPath.selectSingleNode("//funding_level_2");
if (level2 == null) {
contextes.add(level1Id);
contexts.add(level1Id);
} else {
final String level2Id = Joiner.on("::").join(level1Id, level2.valueOf("./name"));
contextMapper.put(level2Id, new ContextDef(level2Id, level2.valueOf("./description"), "concept", ""));
contextes.add(level2Id);
contexts.add(level2Id);
}
}
}