diff --git a/dhp-workflows/dhp-worfklow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/provision.xml b/dhp-workflows/dhp-worfklow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/provision.xml
index 487afee4fa..28cbde70de 100644
--- a/dhp-workflows/dhp-worfklow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/provision.xml
+++ b/dhp-workflows/dhp-worfklow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/provision.xml
@@ -4,7 +4,7 @@
-
+
Data Provision [OCEAN]
@@ -61,11 +61,23 @@
+
+
+ Set the target path to store the CLEANED graph
+
+ cleanedGraphPath
+ /tmp/beta_provision/graph/05_graph_cleaned
+
+
+
+
+
+
Set the target path to store the ORCID enriched graph
orcidGraphPath
- /tmp/beta_provision/graph/05_graph_orcid
+ /tmp/beta_provision/graph/06_graph_orcid
@@ -75,7 +87,7 @@
Set the target path to store the BULK TAGGED graph
bulkTaggingGraphPath
- /tmp/beta_provision/graph/06_graph_bulktagging
+ /tmp/beta_provision/graph/07_graph_bulktagging
@@ -85,7 +97,7 @@
Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph
affiliationGraphPath
- /tmp/beta_provision/graph/07_graph_affiliation
+ /tmp/beta_provision/graph/08_graph_affiliation
@@ -95,7 +107,7 @@
Set the target path to store the COMMUNITY from SELECTED SOURCES graph
communityOrganizationGraphPath
- /tmp/beta_provision/graph/08_graph_comunity_organization
+ /tmp/beta_provision/graph/09_graph_comunity_organization
@@ -105,7 +117,7 @@
Set the target path to store the FUNDING from SEMANTIC RELATION graph
fundingGraphPath
- /tmp/beta_provision/graph/09_graph_funding
+ /tmp/beta_provision/graph/10_graph_funding
@@ -115,7 +127,7 @@
Set the target path to store the COMMUNITY from SEMANTIC RELATION graph
communitySemRelGraphPath
- /tmp/beta_provision/graph/10_graph_comunity_sem_rel
+ /tmp/beta_provision/graph/11_graph_comunity_sem_rel
@@ -125,7 +137,7 @@
Set the target path to store the COUNTRY enriched graph
countryGraphPath
- /tmp/beta_provision/graph/11_graph_country
+ /tmp/beta_provision/graph/12_graph_country
@@ -135,7 +147,7 @@
Set the target path to store the blacklisted graph
blacklistedGraphPath
- /tmp/beta_provision/graph/12_graph_blacklisted
+ /tmp/beta_provision/graph/13_graph_blacklisted
@@ -217,7 +229,8 @@
IIS
{
- 'graphOutputPath' : 'aggregatorGraphPath'
+ 'graphOutputPath' : 'aggregatorGraphPath',
+ 'isLookupUrl' : 'isLookUpUrl'
}
@@ -227,8 +240,8 @@
'mongoDb' : 'mdstore',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
- 'postgresPassword' : 'dnetPwd',
- 'reuseContent' : 'true',
+ 'postgresPassword' : '',
+ 'reuseContent' : 'false',
'contentPath' : '/tmp/beta_provision/aggregator',
'workingDir' : '/tmp/beta_provision/working_dir/aggregator'
}
@@ -255,6 +268,8 @@
{
'oozie.wf.application.path' : '/lib/dnet/actionmanager/wf/main/oozie_app',
+ 'sparkExecutorCores' : '3',
+ 'sparkExecutorMemory' : '10G',
'activePromoteDatasetActionPayload' : 'true',
'activePromoteDatasourceActionPayload' : 'true',
'activePromoteOrganizationActionPayload' : 'true',
@@ -315,6 +330,8 @@
{
'oozie.wf.application.path' : '/lib/dnet/actionmanager/wf/main/oozie_app',
+ 'sparkExecutorCores' : '3',
+ 'sparkExecutorMemory' : '10G',
'activePromoteDatasetActionPayload' : 'true',
'activePromoteDatasourceActionPayload' : 'true',
'activePromoteOrganizationActionPayload' : 'true',
@@ -354,7 +371,43 @@
build-report
-
+
+
+
+
+
+ clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid
+
+ executeOozieJob
+ IIS
+
+ {
+ 'graphInputPath' : 'consistentGraphPath',
+ 'graphOutputPath': 'cleanedGraphPath',
+ 'isLookupUrl': 'isLookUpUrl'
+ }
+
+
+ {
+ 'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
+ 'workingPath' : '/tmp/beta_provision/working_dir/clean'
+ }
+
+ build-report
+
+
+
+
+
+
+
+ Do we skip the graph enrichment steps? (Yes to prepare the graph for the IIS)
+
+ NO
+
+
+
+
@@ -364,7 +417,7 @@
IIS
{
- 'sourcePath' : 'consistentGraphPath',
+ 'sourcePath' : 'cleanedGraphPath',
'outputPath': 'orcidGraphPath'
}
@@ -552,7 +605,7 @@
'workingDir' : '/tmp/beta_provision/working_dir/blacklist',
'postgresURL' : 'jdbc:postgresql://beta.services.openaire.eu:5432/dnet_openaireplus',
'postgresUser' : 'dnet',
- 'postgresPassword' : 'dnetPwd'
+ 'postgresPassword' : ''
}
build-report
@@ -561,12 +614,13 @@
+
- wf_20200509_100941_857
- 2020-05-09T13:26:09+00:00
- FAILURE
- eu.dnetlib.data.hadoop.rmi.HadoopServiceException: hadoop job: 0002933-200403132837156-oozie-oozi-W failed with status: KILLED, oozie log: 2020-05-09 13:23:31,194 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[] No results found 2020-05-09 13:23:31,216 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@:start:] Start action [0002933-200403132837156-oozie-oozi-W@:start:] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:31,216 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@:start:] [***0002933-200403132837156-oozie-oozi-W@:start:***]Action status=DONE 2020-05-09 13:23:31,216 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@:start:] [***0002933-200403132837156-oozie-oozi-W@:start:***]Action updated in DB! 2020-05-09 13:23:31,257 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@:start:] No results found 2020-05-09 13:23:31,275 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@:start:] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@:start: 2020-05-09 13:23:31,275 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W 2020-05-09 13:23:31,314 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@reset-outputpath] Start action [0002933-200403132837156-oozie-oozi-W@reset-outputpath] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:33,897 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@reset-outputpath] [***0002933-200403132837156-oozie-oozi-W@reset-outputpath***]Action status=DONE 2020-05-09 13:23:33,897 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@reset-outputpath] [***0002933-200403132837156-oozie-oozi-W@reset-outputpath***]Action updated in DB! 2020-05-09 13:23:33,947 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@reset-outputpath] No results found 2020-05-09 13:23:33,966 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] Start action [0002933-200403132837156-oozie-oozi-W@copy_entities] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:33,966 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] [***0002933-200403132837156-oozie-oozi-W@copy_entities***]Action status=DONE 2020-05-09 13:23:33,966 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] [***0002933-200403132837156-oozie-oozi-W@copy_entities***]Action updated in DB! 2020-05-09 13:23:34,012 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] No results found 2020-05-09 13:23:34,018 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] No results found 2020-05-09 13:23:34,023 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] No results found 2020-05-09 13:23:34,029 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] No results found 2020-05-09 13:23:34,124 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] Start action [0002933-200403132837156-oozie-oozi-W@copy_relation] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:34,130 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] Start action [0002933-200403132837156-oozie-oozi-W@copy_projects] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:34,130 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] Start action [0002933-200403132837156-oozie-oozi-W@copy_datasources] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:34,140 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] Start action [0002933-200403132837156-oozie-oozi-W@copy_organization] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:23:35,010 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] checking action, hadoop job ID [job_1585920557248_14569] status [RUNNING] 2020-05-09 13:23:35,018 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] [***0002933-200403132837156-oozie-oozi-W@copy_projects***]Action status=RUNNING 2020-05-09 13:23:35,018 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] [***0002933-200403132837156-oozie-oozi-W@copy_projects***]Action updated in DB! 2020-05-09 13:23:35,022 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] checking action, hadoop job ID [job_1585920557248_14568] status [RUNNING] 2020-05-09 13:23:35,027 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_projects 2020-05-09 13:23:35,028 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] [***0002933-200403132837156-oozie-oozi-W@copy_relation***]Action status=RUNNING 2020-05-09 13:23:35,028 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] [***0002933-200403132837156-oozie-oozi-W@copy_relation***]Action updated in DB! 2020-05-09 13:23:35,031 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] checking action, hadoop job ID [job_1585920557248_14570] status [RUNNING] 2020-05-09 13:23:35,035 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] [***0002933-200403132837156-oozie-oozi-W@copy_datasources***]Action status=RUNNING 2020-05-09 13:23:35,035 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] [***0002933-200403132837156-oozie-oozi-W@copy_datasources***]Action updated in DB! 2020-05-09 13:23:35,037 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_relation 2020-05-09 13:23:35,048 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_datasources 2020-05-09 13:23:35,072 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] checking action, hadoop job ID [job_1585920557248_14571] status [RUNNING] 2020-05-09 13:23:35,076 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] [***0002933-200403132837156-oozie-oozi-W@copy_organization***]Action status=RUNNING 2020-05-09 13:23:35,076 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] [***0002933-200403132837156-oozie-oozi-W@copy_organization***]Action updated in DB! 2020-05-09 13:23:35,084 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_organization 2020-05-09 13:23:35,090 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_entities] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_entities 2020-05-09 13:23:35,090 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@reset-outputpath] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@reset-outputpath 2020-05-09 13:23:58,926 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] callback for action [0002933-200403132837156-oozie-oozi-W@copy_datasources] 2020-05-09 13:23:59,085 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] checking action, hadoop job ID [job_1585920557248_14570] status [RUNNING] 2020-05-09 13:23:59,242 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] callback for action [0002933-200403132837156-oozie-oozi-W@copy_projects] 2020-05-09 13:23:59,386 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] checking action, hadoop job ID [job_1585920557248_14569] status [RUNNING] 2020-05-09 13:24:01,343 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] callback for action [0002933-200403132837156-oozie-oozi-W@copy_datasources] 2020-05-09 13:24:01,418 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] Hadoop Jobs launched : [job_1585920557248_14573] 2020-05-09 13:24:01,418 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] action completed, external ID [job_1585920557248_14570] 2020-05-09 13:24:01,493 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_datasources] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_datasources 2020-05-09 13:24:01,935 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] callback for action [0002933-200403132837156-oozie-oozi-W@copy_projects] 2020-05-09 13:24:02,012 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] Hadoop Jobs launched : [job_1585920557248_14572] 2020-05-09 13:24:02,012 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] action completed, external ID [job_1585920557248_14569] 2020-05-09 13:24:02,076 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_projects] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_projects 2020-05-09 13:25:03,172 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] callback for action [0002933-200403132837156-oozie-oozi-W@copy_organization] 2020-05-09 13:25:03,336 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] checking action, hadoop job ID [job_1585920557248_14571] status [RUNNING] 2020-05-09 13:25:05,598 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] callback for action [0002933-200403132837156-oozie-oozi-W@copy_organization] 2020-05-09 13:25:05,688 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] Hadoop Jobs launched : [job_1585920557248_14574] 2020-05-09 13:25:05,691 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] action completed, external ID [job_1585920557248_14571] 2020-05-09 13:25:05,748 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_organization] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_organization 2020-05-09 13:25:23,274 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] callback for action [0002933-200403132837156-oozie-oozi-W@copy_relation] 2020-05-09 13:25:23,409 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] checking action, hadoop job ID [job_1585920557248_14568] status [RUNNING] 2020-05-09 13:25:25,419 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] callback for action [0002933-200403132837156-oozie-oozi-W@copy_relation] 2020-05-09 13:25:25,510 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] Hadoop Jobs launched : [job_1585920557248_14575] 2020-05-09 13:25:25,511 INFO org.apache.oozie.action.hadoop.DistcpActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] action completed, external ID [job_1585920557248_14568] 2020-05-09 13:25:25,565 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] No results found 2020-05-09 13:25:25,585 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_wait] Start action [0002933-200403132837156-oozie-oozi-W@copy_wait] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:25,585 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_wait] [***0002933-200403132837156-oozie-oozi-W@copy_wait***]Action status=DONE 2020-05-09 13:25:25,585 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_wait] [***0002933-200403132837156-oozie-oozi-W@copy_wait***]Action updated in DB! 2020-05-09 13:25:25,627 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_wait] No results found 2020-05-09 13:25:25,648 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] Start action [0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:25,648 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] [***0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1***]Action status=DONE 2020-05-09 13:25:25,648 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] [***0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1***]Action updated in DB! 2020-05-09 13:25:25,694 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] No results found 2020-05-09 13:25:25,700 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] No results found 2020-05-09 13:25:25,706 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] No results found 2020-05-09 13:25:25,711 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] No results found 2020-05-09 13:25:25,801 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] Start action [0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:25,825 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] Start action [0002933-200403132837156-oozie-oozi-W@join_prepare_software] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:25,825 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] Start action [0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:25,828 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] Start action [0002933-200403132837156-oozie-oozi-W@join_prepare_publication] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:27,165 INFO org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] checking action, hadoop job ID [job_1585920557248_14578] status [RUNNING] 2020-05-09 13:25:27,170 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] [***0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct***]Action status=RUNNING 2020-05-09 13:25:27,170 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] [***0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct***]Action updated in DB! 2020-05-09 13:25:27,179 INFO org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] checking action, hadoop job ID [job_1585920557248_14577] status [RUNNING] 2020-05-09 13:25:27,181 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct 2020-05-09 13:25:27,183 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] [***0002933-200403132837156-oozie-oozi-W@join_prepare_software***]Action status=RUNNING 2020-05-09 13:25:27,183 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] [***0002933-200403132837156-oozie-oozi-W@join_prepare_software***]Action updated in DB! 2020-05-09 13:25:27,188 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_software 2020-05-09 13:25:27,617 INFO org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] checking action, hadoop job ID [job_1585920557248_14576] status [RUNNING] 2020-05-09 13:25:27,622 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] [***0002933-200403132837156-oozie-oozi-W@join_prepare_publication***]Action status=RUNNING 2020-05-09 13:25:27,622 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] [***0002933-200403132837156-oozie-oozi-W@join_prepare_publication***]Action updated in DB! 2020-05-09 13:25:27,625 INFO org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] checking action, hadoop job ID [job_1585920557248_14579] status [RUNNING] 2020-05-09 13:25:27,628 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_publication 2020-05-09 13:25:27,629 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] [***0002933-200403132837156-oozie-oozi-W@join_prepare_dataset***]Action status=RUNNING 2020-05-09 13:25:27,629 INFO org.apache.oozie.command.wf.ForkedActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] [***0002933-200403132837156-oozie-oozi-W@join_prepare_dataset***]Action updated in DB! 2020-05-09 13:25:27,634 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_dataset 2020-05-09 13:25:27,639 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@fork_prepare_assoc_step1 2020-05-09 13:25:27,639 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_wait] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_wait 2020-05-09 13:25:27,640 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@copy_relation] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@copy_relation 2020-05-09 13:25:41,416 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] callback for action [0002933-200403132837156-oozie-oozi-W@join_prepare_software] 2020-05-09 13:25:41,490 INFO org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] action completed, external ID [job_1585920557248_14577] 2020-05-09 13:25:41,495 WARN org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] Launcher ERROR, reason: Main class [org.apache.oozie.action.hadoop.SparkMain], main() threw exception, File file:/data/3/yarn/nm/usercache/dnet.beta/appcache/application_1585920557248_14577/container_e68_1585920557248_14577_01_000002/dhp-propagation-1.1.8-SNAPSHOT.jar does not exist 2020-05-09 13:25:41,495 WARN org.apache.oozie.action.hadoop.SparkActionExecutor: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] Launcher exception: File file:/data/3/yarn/nm/usercache/dnet.beta/appcache/application_1585920557248_14577/container_e68_1585920557248_14577_01_000002/dhp-propagation-1.1.8-SNAPSHOT.jar does not exist java.io.FileNotFoundException: File file:/data/3/yarn/nm/usercache/dnet.beta/appcache/application_1585920557248_14577/container_e68_1585920557248_14577_01_000002/dhp-propagation-1.1.8-SNAPSHOT.jar does not exist at org.apache.hadoop.fs.RawLocalFileSystem.deprecatedGetFileStatus(RawLocalFileSystem.java:598) at org.apache.hadoop.fs.RawLocalFileSystem.getFileLinkStatusInternal(RawLocalFileSystem.java:811) at org.apache.hadoop.fs.RawLocalFileSystem.getFileStatus(RawLocalFileSystem.java:588) at org.apache.hadoop.fs.FilterFileSystem.getFileStatus(FilterFileSystem.java:432) at org.apache.hadoop.fs.FileUtil.copy(FileUtil.java:340) at org.apache.hadoop.fs.FileUtil.copy(FileUtil.java:292) at org.apache.spark.deploy.yarn.Client.copyFileToRemote(Client.scala:404) at org.apache.spark.deploy.yarn.Client.org$apache$spark$deploy$yarn$Client$$distribute$1(Client.scala:496) at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$9.apply(Client.scala:595) at org.apache.spark.deploy.yarn.Client$$anonfun$prepareLocalResources$9.apply(Client.scala:594) at scala.Option.foreach(Option.scala:257) at org.apache.spark.deploy.yarn.Client.prepareLocalResources(Client.scala:594) at org.apache.spark.deploy.yarn.Client.createContainerLaunchContext(Client.scala:886) at org.apache.spark.deploy.yarn.Client.submitApplication(Client.scala:180) at org.apache.spark.deploy.yarn.Client.run(Client.scala:1156) at org.apache.spark.deploy.yarn.YarnClusterApplication.start(Client.scala:1608) at org.apache.spark.deploy.SparkSubmit.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:849) at org.apache.spark.deploy.SparkSubmit.doRunMain$1(SparkSubmit.scala:167) at org.apache.spark.deploy.SparkSubmit.submit(SparkSubmit.scala:195) at org.apache.spark.deploy.SparkSubmit.doSubmit(SparkSubmit.scala:86) at org.apache.spark.deploy.SparkSubmit$$anon$2.doSubmit(SparkSubmit.scala:924) at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:933) at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala) at org.apache.oozie.action.hadoop.SparkMain.runSpark(SparkMain.java:178) at org.apache.oozie.action.hadoop.SparkMain.run(SparkMain.java:90) at org.apache.oozie.action.hadoop.LauncherMain.run(LauncherMain.java:81) at org.apache.oozie.action.hadoop.SparkMain.main(SparkMain.java:57) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.oozie.action.hadoop.LauncherMapper.map(LauncherMapper.java:235) at org.apache.hadoop.mapred.MapRunner.run(MapRunner.java:54) at org.apache.hadoop.mapred.MapTask.runOldMapper(MapTask.java:459) at org.apache.hadoop.mapred.MapTask.run(MapTask.java:343) at org.apache.hadoop.mapred.YarnChild$2.run(YarnChild.java:164) at java.security.AccessController.doPrivileged(Native Method) at javax.security.auth.Subject.doAs(Subject.java:422) at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1924) at org.apache.hadoop.mapred.YarnChild.main(YarnChild.java:158) 2020-05-09 13:25:41,514 INFO org.apache.oozie.command.wf.ActionEndXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] ERROR is considered as FAILED for SLA 2020-05-09 13:25:41,541 INFO org.apache.oozie.service.JPAService: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] No results found 2020-05-09 13:25:41,580 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@Kill] Start action [0002933-200403132837156-oozie-oozi-W@Kill] with user-retry state : userRetryCount [0], userRetryMax [0], userRetryInterval [10] 2020-05-09 13:25:41,580 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@Kill] [***0002933-200403132837156-oozie-oozi-W@Kill***]Action status=DONE 2020-05-09 13:25:41,580 INFO org.apache.oozie.command.wf.ActionStartXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@Kill] [***0002933-200403132837156-oozie-oozi-W@Kill***]Action updated in DB! 2020-05-09 13:25:41,692 WARN org.apache.oozie.workflow.lite.LiteWorkflowInstance: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@Kill] Workflow completed [KILLED], killing [3] running nodes 2020-05-09 13:25:41,760 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@Kill] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@Kill 2020-05-09 13:25:41,766 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_software] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_software 2020-05-09 13:25:41,852 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct 2020-05-09 13:25:41,914 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] callback for action [0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] 2020-05-09 13:25:41,920 ERROR org.apache.oozie.command.wf.CompletedActionXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] XException, org.apache.oozie.command.CommandException: E0800: Action it is not running its in [KILLED] state, action [0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] at org.apache.oozie.command.wf.CompletedActionXCommand.eagerVerifyPrecondition(CompletedActionXCommand.java:92) at org.apache.oozie.command.XCommand.call(XCommand.java:257) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.oozie.service.CallableQueueService$CallableWrapper.run(CallableQueueService.java:179) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) 2020-05-09 13:25:41,938 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_publication 2020-05-09 13:25:42,005 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] callback for action [0002933-200403132837156-oozie-oozi-W@join_prepare_publication] 2020-05-09 13:25:42,010 ERROR org.apache.oozie.command.wf.CompletedActionXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_publication] XException, org.apache.oozie.command.CommandException: E0800: Action it is not running its in [KILLED] state, action [0002933-200403132837156-oozie-oozi-W@join_prepare_publication] at org.apache.oozie.command.wf.CompletedActionXCommand.eagerVerifyPrecondition(CompletedActionXCommand.java:92) at org.apache.oozie.command.XCommand.call(XCommand.java:257) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.oozie.service.CallableQueueService$CallableWrapper.run(CallableQueueService.java:179) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) 2020-05-09 13:25:42,028 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[dnet.beta] GROUP[-] TOKEN[] APP[orcid_to_result_from_semrel_propagation] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W 2020-05-09 13:25:42,028 INFO org.apache.oozie.command.wf.WorkflowNotificationXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_dataset] No Notification URL is defined. Therefore nothing to notify for job 0002933-200403132837156-oozie-oozi-W@join_prepare_dataset 2020-05-09 13:25:42,113 INFO org.apache.oozie.servlet.CallbackServlet: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[-] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] callback for action [0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] 2020-05-09 13:25:42,116 ERROR org.apache.oozie.command.wf.CompletedActionXCommand: SERVER[iis-cdh5-test-m3.ocean.icm.edu.pl] USER[-] GROUP[-] TOKEN[] APP[-] JOB[0002933-200403132837156-oozie-oozi-W] ACTION[0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] XException, org.apache.oozie.command.CommandException: E0800: Action it is not running its in [KILLED] state, action [0002933-200403132837156-oozie-oozi-W@join_prepare_otherresearchproduct] at org.apache.oozie.command.wf.CompletedActionXCommand.eagerVerifyPrecondition(CompletedActionXCommand.java:92) at org.apache.oozie.command.XCommand.call(XCommand.java:257) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.oozie.service.CallableQueueService$CallableWrapper.run(CallableQueueService.java:179) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745)
+ wf_20200615_163630_609
+ 2020-06-15T17:08:00+00:00
+ SUCCESS
+
\ No newline at end of file