From 638ad9e74f09a7ea975e49cc7842746096608cbc Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Fri, 3 Nov 2023 15:06:50 +0100 Subject: [PATCH] changing test for new implementation --- ...kResultToCommunityFromOrganizationJob.java | 2 - .../dnetlib/dhp/bulktag/BulkTagJobTest.java | 4 +- .../PrepareAssocTest.java | 95 ------------------ .../ResultToCommunityJobTest.java | 8 +- .../sample/dataset | 10 ++ .../sample/dataset_10.json.gz | Bin 7128 -> 0 bytes 6 files changed, 16 insertions(+), 103 deletions(-) delete mode 100644 dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/PrepareAssocTest.java create mode 100644 dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/dataset delete mode 100644 dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/dataset_10.json.gz diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java index fe79f1be1..df8ca3805 100644 --- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java +++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java @@ -60,8 +60,6 @@ public class SparkResultToCommunityFromOrganizationJob { conf, isSparkSessionManaged, spark -> { - // removeOutputDir(spark, outputPath); - execPropagation(spark, inputPath, outputPath, possibleupdatespath); }); diff --git a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java index efabcc6bc..64eb86338 100644 --- a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java +++ b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java @@ -40,7 +40,9 @@ public class BulkTagJobTest { "\"fos\" : \"$['subject'][?(@['qualifier']['classid']=='FOS')].value\"," + "\"sdg\" : \"$['subject'][?(@['qualifier']['classid']=='SDG')].value\"," + "\"hostedby\" : \"$['instance'][*]['hostedby']['key']\" , " + - "\"collectedfrom\" : \"$['instance'][*]['collectedfrom']['key']\"} "; + "\"collectedfrom\" : \"$['instance'][*]['collectedfrom']['key']\"," + + "\"publisher\":\"$['publisher'].value\"," + + "\"publicationyear\":\"$['dateofacceptance'].value\"} "; private static SparkSession spark; diff --git a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/PrepareAssocTest.java b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/PrepareAssocTest.java deleted file mode 100644 index 6536ecc85..000000000 --- a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/PrepareAssocTest.java +++ /dev/null @@ -1,95 +0,0 @@ - -package eu.dnetlib.dhp.resulttocommunityfromorganization; - -import java.io.IOException; -import java.nio.file.Files; -import java.nio.file.Path; - -import org.apache.commons.io.FileUtils; -import org.apache.commons.io.IOUtils; -import org.apache.spark.SparkConf; -import org.apache.spark.api.java.JavaRDD; -import org.apache.spark.api.java.JavaSparkContext; -import org.apache.spark.sql.Encoders; -import org.apache.spark.sql.SparkSession; -import org.junit.jupiter.api.AfterAll; -import org.junit.jupiter.api.Assertions; -import org.junit.jupiter.api.BeforeAll; -import org.junit.jupiter.api.Test; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.google.gson.Gson; - -import eu.dnetlib.dhp.api.Utils; -import eu.dnetlib.dhp.api.model.CommunityEntityMap; -import eu.dnetlib.dhp.bulktag.BulkTagJobTest; -import eu.dnetlib.dhp.bulktag.SparkBulkTagJob; -import eu.dnetlib.dhp.schema.oaf.Dataset; - -/** - * @author miriam.baglioni - * @Date 13/10/23 - */ -public class PrepareAssocTest { - - private static SparkSession spark; - - private static Path workingDir; - - private static final Logger log = LoggerFactory.getLogger(PrepareAssocTest.class); - - @BeforeAll - public static void beforeAll() throws IOException { - workingDir = Files.createTempDirectory(BulkTagJobTest.class.getSimpleName()); - log.info("using work dir {}", workingDir); - - SparkConf conf = new SparkConf(); - conf.setAppName(BulkTagJobTest.class.getSimpleName()); - - conf.setMaster("local[*]"); - conf.set("spark.driver.host", "localhost"); - conf.set("hive.metastore.local", "true"); - conf.set("spark.ui.enabled", "false"); - conf.set("spark.sql.warehouse.dir", workingDir.toString()); - conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString()); - - spark = SparkSession - .builder() - .appName(PrepareAssocTest.class.getSimpleName()) - .config(conf) - .getOrCreate(); - } - - @AfterAll - public static void afterAll() throws IOException { - FileUtils.deleteDirectory(workingDir.toFile()); - spark.stop(); - } - - @Test - void test1() throws Exception { - - PrepareResultCommunitySet - .main( - new String[] { - - "-isSparkSessionManaged", Boolean.FALSE.toString(), - "-sourcePath", - getClass().getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/relation/").getPath(), - "-outputPath", workingDir.toString() + "/prepared", - "-production", Boolean.TRUE.toString(), - "-hive_metastore_uris", "" - }); - - final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext()); - - JavaRDD tmp = sc - .textFile(workingDir.toString() + "/prepared") - .map(item -> new ObjectMapper().readValue(item, ResultCommunityList.class)); - - tmp.foreach(r -> System.out.println(new ObjectMapper().writeValueAsString(r))); - } - -} diff --git a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/ResultToCommunityJobTest.java b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/ResultToCommunityJobTest.java index da3be8b35..6440ded92 100644 --- a/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/ResultToCommunityJobTest.java +++ b/dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/ResultToCommunityJobTest.java @@ -72,15 +72,13 @@ public class ResultToCommunityJobTest { SparkResultToCommunityFromOrganizationJob .main( new String[] { - "-isTest", Boolean.TRUE.toString(), + "-isSparkSessionManaged", Boolean.FALSE.toString(), "-sourcePath", getClass() - .getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/sample") + .getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/") .getPath(), - "-hive_metastore_uris", "", - "-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset", - "-outputPath", workingDir.toString() + "/dataset", + "-outputPath", workingDir.toString() + "/", "-preparedInfoPath", preparedInfoPath }); diff --git a/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/dataset b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/dataset new file mode 100644 index 000000000..61a1da1ac --- /dev/null +++ b/dhp-workflows/dhp-enrichment/src/test/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/sample/dataset @@ -0,0 +1,10 @@ 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puede tener para el deportista. \"Lo que estamos investigando es cómo una sustancia, que te puede hacer rendir mejor, cómo puede afectar negativamente cuando termina una competición\".\n\nPero esta investigación no sólo puede extraer conclusiones interesantes y útiles para los deportistas profesionales, \"investigando el deporte de alto rendimiento podemos conocer los beneficios y perjuicios de la cafeína que también afectarían al deportista amateur y hacer un deporte en general más seguro\".\n\nPara el desarrollo de este proyecto de investigación están colaborando el Laboratorio de Fisiología del Ejercicio de la Universidad Camilo José Cela y la Agencia para la Protección de la Salud en el Deporte.\nPara el desarrollo de este proyecto de investigación están colaborando el Laboratorio de Fisiología del Ejercicio de la Universidad Camilo José Cela y la Agencia para la Protección de la Salud en el 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El formato es al estilo inglés, similar al de la Oxford Union, donde algunos jóvenes se reunían a debatir sobre temas de la más candente actualidad y polemizaban con la intención de formarse en tan valoradas habilidades.\n\nLa Liga de Debate CICAE-UCJC es una ocasión única para los alumnos de ponerse en contacto con herramientas tan útiles como la oratoria y la comunicación efectiva. Pero, sobre todo, una oportunidad de fomentar el pensamiento crítico y la socialización entre alumnos con espíritu emprendedor. La Liga de Debate CICAE - Universidad Camilo José Cela se diferencia del resto de torneos en que potenciamos que sea eminentemente formativa. 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La fase final del tratamiento se enfoca en que el paciente \"sea capaz de reconstruir su vida\" a través de programas de entrenamiento de habilidades sociales, asertividad, familias... \"Juntando todas las áreas de intervención, la abstinencia se mantiene mucho más tiempo y las recaídas 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