actions promotion can optionally avoid grouping objects by id (configured via shouldGroupById parameter)

dhp-workflows/dhp-actionmanager/src/main/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadForGraphTableJob.java

@@ -68,6 +68,12 @@ public class PromoteActionPayloadForGraphTableJob {
 		MergeAndGet.Strategy strategy = MergeAndGet.Strategy.valueOf(parser.get("mergeAndGetStrategy").toUpperCase());
 		logger.info("strategy: {}", strategy);
 
+		Boolean shouldGroupById = Optional
+				.ofNullable(parser.get("shouldGroupById"))
+				.map(Boolean::valueOf)
+				.orElse(true);
+		logger.info("shouldGroupById: {}", shouldGroupById);
+
 		Class<? extends Oaf> rowClazz = (Class<? extends Oaf>) Class.forName(graphTableClassName);
 		Class<? extends Oaf> actionPayloadClazz = (Class<? extends Oaf>) Class.forName(actionPayloadClassName);
 
@@ -89,7 +95,8 @@ public class PromoteActionPayloadForGraphTableJob {
 					outputGraphTablePath,
 					strategy,
 					rowClazz,
-					actionPayloadClazz);
+					actionPayloadClazz,
+					shouldGroupById);
 			});
 	}
 
@@ -115,12 +122,12 @@ public class PromoteActionPayloadForGraphTableJob {
 			String outputGraphTablePath,
 			MergeAndGet.Strategy strategy,
 			Class<G> rowClazz,
-		Class<A> actionPayloadClazz) {
+			Class<A> actionPayloadClazz, Boolean shouldGroupById) {
 		Dataset<G> rowDS = readGraphTable(spark, inputGraphTablePath, rowClazz);
 		Dataset<A> actionPayloadDS = readActionPayload(spark, inputActionPayloadPath, actionPayloadClazz);
 
 		Dataset<G> result = promoteActionPayloadForGraphTable(
-			rowDS, actionPayloadDS, strategy, rowClazz, actionPayloadClazz)
+			rowDS, actionPayloadDS, strategy, rowClazz, actionPayloadClazz, shouldGroupById)
 				.map((MapFunction<G, G>) value -> value, Encoders.bean(rowClazz));
 
 		saveGraphTable(result, outputGraphTablePath);
@@ -174,7 +181,8 @@ public class PromoteActionPayloadForGraphTableJob {
 		Dataset<A> actionPayloadDS,
 		MergeAndGet.Strategy strategy,
 		Class<G> rowClazz,
-		Class<A> actionPayloadClazz) {
+		Class<A> actionPayloadClazz,
+		Boolean shouldGroupById) {
 		logger
 			.info(
 				"Promoting action payload for graph table: payload={}, table={}",
@@ -198,9 +206,13 @@ public class PromoteActionPayloadForGraphTableJob {
 				rowClazz,
 				actionPayloadClazz);
 
+		if (shouldGroupById) {
 			return PromoteActionPayloadFunctions
 					.groupGraphTableByIdAndMerge(
 							joinedAndMerged, rowIdFn, mergeRowsAndGetFn, zeroFn, isNotZeroFn, rowClazz);
+		} else {
+			return joinedAndMerged;
+		}
 	}
 
 	private static <T extends Oaf> SerializableSupplier<T> zeroFn(Class<T> clazz) {

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/promote/promote_action_payload_for_graph_table_input_parameters.json

@@ -40,5 +40,11 @@
     "paramLongName": "mergeAndGetStrategy",
     "paramDescription": "strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET",
     "paramRequired": true
+  },
+  {
+    "paramName": "sgid",
+    "paramLongName": "shouldGroupById",
+    "paramDescription": "indicates whether the promotion operation should group objects in the graph by id or not",
+    "paramRequired": true
   }
 ]

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/dataset/oozie_app/workflow.xml

@@ -24,6 +24,10 @@
             <name>mergeAndGetStrategy</name>
             <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
         </property>
+        <property>
+            <name>shouldGroupById</name>
+            <description>indicates whether the promotion operation should group objects in the graph by id or not</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -111,6 +115,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
             <arg>--outputGraphTablePath</arg><arg>${workingDir}/dataset</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="DecisionPromoteResultActionPayloadForDatasetTable"/>
         <error to="Kill"/>
@@ -162,6 +167,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
             <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/dataset</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="End"/>
         <error to="Kill"/>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/main/oozie_app/workflow.xml

@@ -56,6 +56,11 @@
             <name>mergeAndGetStrategy</name>
             <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
         </property>
+        <property>
+            <name>shouldGroupById</name>
+            <value>false</value>
+            <description>indicates whether the promotion operation should group objects in the graph by id or not</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/otherresearchproduct/oozie_app/workflow.xml

@@ -24,6 +24,10 @@
             <name>mergeAndGetStrategy</name>
             <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
         </property>
+        <property>
+            <name>shouldGroupById</name>
+            <description>indicates whether the promotion operation should group objects in the graph by id or not</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -110,6 +114,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
             <arg>--outputGraphTablePath</arg><arg>${workingDir}/otherresearchproduct</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="DecisionPromoteResultActionPayloadForOtherResearchProductTable"/>
         <error to="Kill"/>
@@ -161,6 +166,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
             <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/otherresearchproduct</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="End"/>
         <error to="Kill"/>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/publication/oozie_app/workflow.xml

@@ -24,6 +24,10 @@
             <name>mergeAndGetStrategy</name>
             <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
         </property>
+        <property>
+            <name>shouldGroupById</name>
+            <description>indicates whether the promotion operation should group objects in the graph by id or not</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -111,6 +115,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
             <arg>--outputGraphTablePath</arg><arg>${workingDir}/publication</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="DecisionPromoteResultActionPayloadForPublicationTable"/>
         <error to="Kill"/>
@@ -162,6 +167,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
             <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/publication</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="End"/>
         <error to="Kill"/>

dhp-workflows/dhp-actionmanager/src/main/resources/eu/dnetlib/dhp/actionmanager/wf/software/oozie_app/workflow.xml

@@ -24,6 +24,10 @@
             <name>mergeAndGetStrategy</name>
             <description>strategy for merging graph table objects with action payload instances, MERGE_FROM_AND_GET or SELECT_NEWER_AND_GET</description>
         </property>
+        <property>
+            <name>shouldGroupById</name>
+            <description>indicates whether the promotion operation should group objects in the graph by id or not</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -110,6 +114,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
             <arg>--outputGraphTablePath</arg><arg>${workingDir}/software</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="DecisionPromoteResultActionPayloadForSoftwareTable"/>
         <error to="Kill"/>
@@ -161,6 +166,7 @@
             <arg>--actionPayloadClassName</arg><arg>eu.dnetlib.dhp.schema.oaf.Result</arg>
             <arg>--outputGraphTablePath</arg><arg>${outputGraphRootPath}/software</arg>
             <arg>--mergeAndGetStrategy</arg><arg>${mergeAndGetStrategy}</arg>
+            <arg>--shouldGroupById</arg><arg>${shouldGroupById}</arg>
         </spark>
         <ok to="End"/>
         <error to="Kill"/>

dhp-workflows/dhp-actionmanager/src/test/java/eu/dnetlib/dhp/actionmanager/promote/PromoteActionPayloadForGraphTableJobTest.java

@@ -101,7 +101,9 @@ public class PromoteActionPayloadForGraphTableJobTest {
 							"-outputGraphTablePath",
 							"",
 							"-mergeAndGetStrategy",
-							MergeAndGet.Strategy.SELECT_NEWER_AND_GET.name()
+							MergeAndGet.Strategy.SELECT_NEWER_AND_GET.name(),
+							"--shouldGroupById",
+							"true"
 						}));
 
 			// then
@@ -141,7 +143,9 @@ public class PromoteActionPayloadForGraphTableJobTest {
 						"-outputGraphTablePath",
 						outputGraphTableDir.toString(),
 						"-mergeAndGetStrategy",
-						strategy.name()
+						strategy.name(),
+						"--shouldGroupById",
+						"true"
 					});
 
 			// then