code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala

fixed test
This commit is contained in:
Sandro La Bruzzo 2021-11-17 12:23:52 +01:00
parent 2fd9ceac13
commit 1f5ee116ed
26 changed files with 235 additions and 303 deletions

View File

@ -1,31 +0,0 @@
package eu.dnetlib.dhp.oa.sx.graphimport
import eu.dnetlib.dhp.application.ArgumentApplicationParser
import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf
import org.apache.spark.sql.SparkSession
object SparkDataciteToOAF {
def main(args: Array[String]): Unit = {
val conf: SparkConf = new SparkConf()
val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/ebi/datacite_to_df_params.json")))
parser.parseArgument(args)
val spark: SparkSession =
SparkSession
.builder()
.config(conf)
.appName(getClass.getSimpleName)
.master(parser.get("master")).getOrCreate()
import spark.implicits._
val sc = spark.sparkContext
val inputPath = parser.get("inputPath")
}
}

View File

@ -1,8 +1,8 @@
package eu.dnetlib.dhp.oa.graph.hostedbymap package eu.dnetlib.dhp.oa.graph.hostedbymap
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo
import org.apache.spark.sql.{Dataset, Encoder, Encoders, TypedColumn}
import org.apache.spark.sql.expressions.Aggregator import org.apache.spark.sql.expressions.Aggregator
import org.apache.spark.sql.{Dataset, Encoder, Encoders, TypedColumn}
case class HostedByItemType(id: String, officialname: String, issn: String, eissn: String, lissn: String, openAccess: Boolean) {} case class HostedByItemType(id: String, officialname: String, issn: String, eissn: String, lissn: String, openAccess: Boolean) {}

View File

@ -2,13 +2,12 @@ package eu.dnetlib.dhp.oa.graph.hostedbymap
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.oa.graph.hostedbymap.SparkApplyHostedByMapToResult.{applyHBtoPubs, getClass}
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo
import eu.dnetlib.dhp.schema.common.ModelConstants import eu.dnetlib.dhp.schema.common.ModelConstants
import eu.dnetlib.dhp.schema.oaf.{Datasource, Publication} import eu.dnetlib.dhp.schema.oaf.Datasource
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}

View File

@ -5,16 +5,13 @@ import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo
import eu.dnetlib.dhp.schema.common.ModelConstants import eu.dnetlib.dhp.schema.common.ModelConstants
import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils
import eu.dnetlib.dhp.schema.oaf.{Datasource, Instance, OpenAccessRoute, Publication} import eu.dnetlib.dhp.schema.oaf.{Instance, OpenAccessRoute, Publication}
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
import scala.collection.JavaConverters._ import scala.collection.JavaConverters._
object SparkApplyHostedByMapToResult { object SparkApplyHostedByMapToResult {
def applyHBtoPubs(join: Dataset[EntityInfo], pubs: Dataset[Publication]) = { def applyHBtoPubs(join: Dataset[EntityInfo], pubs: Dataset[Publication]) = {
@ -39,6 +36,7 @@ object SparkApplyHostedByMapToResult {
p p
})(Encoders.bean(classOf[Publication])) })(Encoders.bean(classOf[Publication]))
} }
def main(args: Array[String]): Unit = { def main(args: Array[String]): Unit = {

View File

@ -3,18 +3,15 @@ package eu.dnetlib.dhp.oa.graph.hostedbymap
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo
import eu.dnetlib.dhp.schema.oaf.{Journal, Publication} import eu.dnetlib.dhp.schema.oaf.{Journal, Publication}
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.json4s import org.json4s
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.json4s.jackson.JsonMethods.parse import org.json4s.jackson.JsonMethods.parse
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
object SparkPrepareHostedByInfoToApply { object SparkPrepareHostedByInfoToApply {
implicit val mapEncoderPInfo: Encoder[EntityInfo] = Encoders.bean(classOf[EntityInfo]) implicit val mapEncoderPInfo: Encoder[EntityInfo] = Encoders.bean(classOf[EntityInfo])

View File

@ -1,22 +1,20 @@
package eu.dnetlib.dhp.oa.graph.hostedbymap package eu.dnetlib.dhp.oa.graph.hostedbymap
import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.{DOAJModel, UnibiGoldModel} import eu.dnetlib.dhp.oa.graph.hostedbymap.model.{DOAJModel, UnibiGoldModel}
import eu.dnetlib.dhp.schema.oaf.Datasource import eu.dnetlib.dhp.schema.oaf.Datasource
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.hadoop.conf.Configuration
import org.apache.hadoop.fs.{FileSystem, Path}
import org.apache.hadoop.io.compress.GzipCodec
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession}
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
import com.fasterxml.jackson.databind.ObjectMapper
import org.apache.hadoop.conf.Configuration
import org.apache.hadoop.fs.FileSystem
import org.apache.hadoop.fs.Path
import java.io.PrintWriter import java.io.PrintWriter
import org.apache.hadoop.io.compress.GzipCodec
object SparkProduceHostedByMap { object SparkProduceHostedByMap {
@ -52,7 +50,6 @@ object SparkProduceHostedByMap {
} }
def getHostedByItemType(id: String, officialname: String, issn: String, eissn: String, issnl: String, oa: Boolean): HostedByItemType = { def getHostedByItemType(id: String, officialname: String, issn: String, eissn: String, issnl: String, oa: Boolean): HostedByItemType = {
if (issn != null) { if (issn != null) {
if (eissn != null) { if (eissn != null) {
@ -163,7 +160,6 @@ object SparkProduceHostedByMap {
} }
def writeToHDFS(input: Array[String], outputPath: String, hdfsNameNode: String): Unit = { def writeToHDFS(input: Array[String], outputPath: String, hdfsNameNode: String): Unit = {
val conf = new Configuration() val conf = new Configuration()
@ -182,7 +178,6 @@ object SparkProduceHostedByMap {
} }
def main(args: Array[String]): Unit = { def main(args: Array[String]): Unit = {
val logger: Logger = LoggerFactory.getLogger(getClass) val logger: Logger = LoggerFactory.getLogger(getClass)

View File

@ -4,20 +4,14 @@ import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.common.HdfsSupport import eu.dnetlib.dhp.common.HdfsSupport
import eu.dnetlib.dhp.schema.common.ModelSupport import eu.dnetlib.dhp.schema.common.ModelSupport
import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo
import eu.dnetlib.dhp.schema.oaf.Oaf import eu.dnetlib.dhp.schema.oaf.Oaf
import eu.dnetlib.dhp.utils.DHPUtils import eu.dnetlib.dhp.utils.DHPUtils
import org.apache.commons.io.IOUtils
import org.apache.commons.lang3.StringUtils
import org.apache.http.client.methods.HttpGet
import org.apache.http.impl.client.HttpClients
import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
import org.apache.spark.{SparkConf, SparkContext} import org.apache.spark.{SparkConf, SparkContext}
import org.slf4j.LoggerFactory import org.slf4j.LoggerFactory
import scala.collection.JavaConverters._
import scala.io.Source import scala.io.Source
import scala.collection.JavaConverters._
object CopyHdfsOafSparkApplication { object CopyHdfsOafSparkApplication {
def main(args: Array[String]): Unit = { def main(args: Array[String]): Unit = {

View File

@ -2,7 +2,6 @@ package eu.dnetlib.dhp.oa.graph.resolution
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.common.HdfsSupport
import eu.dnetlib.dhp.schema.common.EntityType import eu.dnetlib.dhp.schema.common.EntityType
import eu.dnetlib.dhp.schema.oaf.{OtherResearchProduct, Publication, Result, Software, Dataset => OafDataset} import eu.dnetlib.dhp.schema.oaf.{OtherResearchProduct, Publication, Result, Software, Dataset => OafDataset}
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils

View File

@ -3,7 +3,7 @@ package eu.dnetlib.dhp.oa.graph.resolution
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.common.HdfsSupport import eu.dnetlib.dhp.common.HdfsSupport
import eu.dnetlib.dhp.schema.oaf.{Relation, Result} import eu.dnetlib.dhp.schema.oaf.Relation
import eu.dnetlib.dhp.utils.DHPUtils import eu.dnetlib.dhp.utils.DHPUtils
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.hadoop.fs.{FileSystem, Path} import org.apache.hadoop.fs.{FileSystem, Path}

View File

@ -2,7 +2,7 @@ package eu.dnetlib.dhp.sx.graph
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.schema.oaf.{Oaf, OtherResearchProduct, Publication, Result, Software, Dataset => OafDataset} import eu.dnetlib.dhp.schema.oaf.Result
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.hadoop.io.compress.GzipCodec import org.apache.hadoop.io.compress.GzipCodec
import org.apache.spark.SparkConf import org.apache.spark.SparkConf

View File

@ -5,10 +5,10 @@ import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.schema.sx.scholix.Scholix import eu.dnetlib.dhp.schema.sx.scholix.Scholix
import eu.dnetlib.dhp.schema.sx.summary.ScholixSummary import eu.dnetlib.dhp.schema.sx.summary.ScholixSummary
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.hadoop.io.compress.GzipCodec
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession} import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession}
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
import org.apache.hadoop.io.compress._
object SparkConvertObjectToJson { object SparkConvertObjectToJson {

View File

@ -2,11 +2,12 @@ package eu.dnetlib.dhp.sx.graph
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.schema.oaf.{OtherResearchProduct, Publication, Relation, Result, Software, Dataset => OafDataset} import eu.dnetlib.dhp.schema.oaf.{OtherResearchProduct, Publication, Relation, Software, Dataset => OafDataset}
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
object SparkConvertRDDtoDataset { object SparkConvertRDDtoDataset {
def main(args: Array[String]): Unit = { def main(args: Array[String]): Unit = {

View File

@ -1,14 +1,12 @@
package eu.dnetlib.dhp.sx.graph package eu.dnetlib.dhp.sx.graph
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import eu.dnetlib.dhp.schema.oaf.{Oaf, OtherResearchProduct, Publication, Relation, Result, Software, Dataset => OafDataset} import eu.dnetlib.dhp.schema.oaf.{Dataset => OafDataset, _}
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
object SparkCreateInputGraph { object SparkCreateInputGraph {
def main(args: Array[String]): Unit = { def main(args: Array[String]): Unit = {
@ -41,9 +39,6 @@ object SparkCreateInputGraph {
implicit val relEncoder: Encoder[Relation] = Encoders.kryo(classOf[Relation]) implicit val relEncoder: Encoder[Relation] = Encoders.kryo(classOf[Relation])
val sourcePath = parser.get("sourcePath") val sourcePath = parser.get("sourcePath")
log.info(s"sourcePath -> $sourcePath") log.info(s"sourcePath -> $sourcePath")
val targetPath = parser.get("targetPath") val targetPath = parser.get("targetPath")

View File

@ -9,7 +9,7 @@ import eu.dnetlib.dhp.sx.graph.scholix.ScholixUtils.RelatedEntities
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.functions.count import org.apache.spark.sql.functions.count
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
object SparkCreateScholix { object SparkCreateScholix {

View File

@ -6,7 +6,7 @@ import eu.dnetlib.dhp.schema.sx.summary.ScholixSummary
import eu.dnetlib.dhp.sx.graph.scholix.ScholixUtils import eu.dnetlib.dhp.sx.graph.scholix.ScholixUtils
import org.apache.commons.io.IOUtils import org.apache.commons.io.IOUtils
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql._
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
object SparkCreateSummaryObject { object SparkCreateSummaryObject {

View File

@ -5,6 +5,7 @@ import org.apache.spark.sql.{Encoder, Encoders}
import org.json4s import org.json4s
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.json4s.jackson.JsonMethods.parse import org.json4s.jackson.JsonMethods.parse
import java.util.regex.Pattern import java.util.regex.Pattern
import scala.language.postfixOps import scala.language.postfixOps
import scala.xml.{Elem, Node, XML} import scala.xml.{Elem, Node, XML}

View File

@ -2,13 +2,12 @@ package eu.dnetlib.dhp.sx.graph.pangaea
import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.application.ArgumentApplicationParser
import org.apache.spark.rdd.RDD import org.apache.spark.rdd.RDD
import org.apache.spark.{SparkConf, SparkContext}
import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession} import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
import org.apache.spark.{SparkConf, SparkContext}
import org.slf4j.{Logger, LoggerFactory} import org.slf4j.{Logger, LoggerFactory}
import scala.collection.JavaConverters._
import scala.io.Source import scala.io.Source
import scala.collection.JavaConverters._
object SparkGeneratePanagaeaDataset { object SparkGeneratePanagaeaDataset {
@ -46,7 +45,4 @@ object SparkGeneratePanagaeaDataset {
} }
} }

View File

@ -1,6 +1,5 @@
package eu.dnetlib.dhp.sx.graph.scholix package eu.dnetlib.dhp.sx.graph.scholix
import eu.dnetlib.dhp.schema.oaf.{Publication, Relation, Result, StructuredProperty} import eu.dnetlib.dhp.schema.oaf.{Publication, Relation, Result, StructuredProperty}
import eu.dnetlib.dhp.schema.sx.scholix._ import eu.dnetlib.dhp.schema.sx.scholix._
import eu.dnetlib.dhp.schema.sx.summary.{CollectedFromType, SchemeValue, ScholixSummary, Typology} import eu.dnetlib.dhp.schema.sx.summary.{CollectedFromType, SchemeValue, ScholixSummary, Typology}
@ -11,9 +10,9 @@ import org.json4s
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.json4s.jackson.JsonMethods.parse import org.json4s.jackson.JsonMethods.parse
import scala.collection.JavaConverters._
import scala.io.Source import scala.io.Source
import scala.language.postfixOps import scala.collection.JavaConverters._
object ScholixUtils { object ScholixUtils {
@ -21,6 +20,7 @@ object ScholixUtils {
val DNET_IDENTIFIER_SCHEMA: String = "DNET Identifier" val DNET_IDENTIFIER_SCHEMA: String = "DNET Identifier"
val DATE_RELATION_KEY: String = "RelationDate" val DATE_RELATION_KEY: String = "RelationDate"
case class RelationVocabulary(original: String, inverse: String) {} case class RelationVocabulary(original: String, inverse: String) {}
case class RelatedEntities(id: String, relatedDataset: Long, relatedPublication: Long) {} case class RelatedEntities(id: String, relatedDataset: Long, relatedPublication: Long) {}
@ -66,7 +66,6 @@ object ScholixUtils {
} }
val statsAggregator: Aggregator[(String, String, Long), RelatedEntities, RelatedEntities] = new Aggregator[(String, String, Long), RelatedEntities, RelatedEntities] with Serializable { val statsAggregator: Aggregator[(String, String, Long), RelatedEntities, RelatedEntities] = new Aggregator[(String, String, Long), RelatedEntities, RelatedEntities] with Serializable {
override def zero: RelatedEntities = null override def zero: RelatedEntities = null
@ -85,8 +84,7 @@ object ScholixUtils {
if (b1 != null && b2 != null) if (b1 != null && b2 != null)
RelatedEntities(b1.id, b1.relatedDataset + b2.relatedDataset, b1.relatedPublication + b2.relatedPublication) RelatedEntities(b1.id, b1.relatedDataset + b2.relatedDataset, b1.relatedPublication + b2.relatedPublication)
else else if (b1 != null)
if (b1!= null)
b1 b1
else else
b2 b2
@ -144,7 +142,6 @@ object ScholixUtils {
s s
} }
@ -203,8 +200,7 @@ object ScholixUtils {
if (summaryObject.getDate != null && !summaryObject.getDate.isEmpty) if (summaryObject.getDate != null && !summaryObject.getDate.isEmpty)
r.setPublicationDate(summaryObject.getDate.get(0)) r.setPublicationDate(summaryObject.getDate.get(0))
if (summaryObject.getPublisher!= null && !summaryObject.getPublisher.isEmpty) if (summaryObject.getPublisher != null && !summaryObject.getPublisher.isEmpty) {
{
val plist: List[ScholixEntityId] = summaryObject.getPublisher.asScala.map(p => new ScholixEntityId(p, null)).toList val plist: List[ScholixEntityId] = summaryObject.getPublisher.asScala.map(p => new ScholixEntityId(p, null)).toList
if (plist.nonEmpty) if (plist.nonEmpty)
@ -228,9 +224,6 @@ object ScholixUtils {
} }
def scholixFromSource(relation: Relation, source: ScholixSummary): Scholix = { def scholixFromSource(relation: Relation, source: ScholixSummary): Scholix = {
if (relation == null || source == null) if (relation == null || source == null)

View File

@ -3,13 +3,9 @@ package eu.dnetlib.dhp.oa.graph.hostedbymap
import com.fasterxml.jackson.databind.ObjectMapper import com.fasterxml.jackson.databind.ObjectMapper
import eu.dnetlib.dhp.oa.graph.hostedbymap.SparkPrepareHostedByInfoToApply.{joinResHBM, prepareResultInfo, toEntityInfo} import eu.dnetlib.dhp.oa.graph.hostedbymap.SparkPrepareHostedByInfoToApply.{joinResHBM, prepareResultInfo, toEntityInfo}
import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo import eu.dnetlib.dhp.oa.graph.hostedbymap.model.EntityInfo
import eu.dnetlib.dhp.schema.oaf.{Datasource, OpenAccessRoute, Publication}
import javax.management.openmbean.OpenMBeanAttributeInfo
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession} import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession}
import org.json4s
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import eu.dnetlib.dhp.schema.common.ModelConstants
import org.junit.jupiter.api.Assertions.{assertEquals, assertTrue} import org.junit.jupiter.api.Assertions.{assertEquals, assertTrue}
import org.junit.jupiter.api.Test import org.junit.jupiter.api.Test

View File

@ -4,10 +4,9 @@ import eu.dnetlib.dhp.schema.oaf.Datasource
import org.apache.spark.SparkConf import org.apache.spark.SparkConf
import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession} import org.apache.spark.sql.{Dataset, Encoder, Encoders, SparkSession}
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.junit.jupiter.api.Assertions.{assertNotNull, assertTrue}
import org.junit.jupiter.api.Test
import org.junit.jupiter.api.Assertions._
import org.json4s.jackson.Serialization.write import org.json4s.jackson.Serialization.write
import org.junit.jupiter.api.Assertions._
import org.junit.jupiter.api.Test
class TestPreprocess extends java.io.Serializable{ class TestPreprocess extends java.io.Serializable{

View File

@ -159,6 +159,7 @@ class ResolveEntitiesTest extends Serializable {
val datDS:Dataset[Result] = spark.read.text(s"$workingDir/work/resolvedGraph/dataset").as[String].map(s => SparkResolveEntities.deserializeObject(s, EntityType.dataset)) val datDS:Dataset[Result] = spark.read.text(s"$workingDir/work/resolvedGraph/dataset").as[String].map(s => SparkResolveEntities.deserializeObject(s, EntityType.dataset))
val td = datDS.filter(p => p.getTitle!=null && p.getSubject!=null).filter(p => p.getTitle.asScala.exists(t => t.getValue.equalsIgnoreCase("FAKETITLE"))).count() val td = datDS.filter(p => p.getTitle!=null && p.getSubject!=null).filter(p => p.getTitle.asScala.exists(t => t.getValue.equalsIgnoreCase("FAKETITLE"))).count()

View File

@ -3,7 +3,6 @@ package eu.dnetlib.dhp.sx.pangaea
import eu.dnetlib.dhp.sx.graph.pangaea.PangaeaUtils import eu.dnetlib.dhp.sx.graph.pangaea.PangaeaUtils
import org.junit.jupiter.api.Test import org.junit.jupiter.api.Test
import java.util.TimeZone
import java.text.SimpleDateFormat import java.text.SimpleDateFormat
import java.util.Date import java.util.Date
import scala.io.Source import scala.io.Source