From dff032e2b34fa28476e0b62197f8fe2c07d2775e Mon Sep 17 00:00:00 2001 From: Andrea Mannocci Date: Fri, 8 Oct 2021 13:55:20 +0200 Subject: [PATCH] regenerating datasets with proper column names --- notebooks/01.2-exploration-opendoar.ipynb | 2 +- notebooks/02-subjects&geographic.ipynb | 9917 +++++++++++++++------ notebooks/03-overlap.ipynb | 378 +- 3 files changed, 7212 insertions(+), 3085 deletions(-) diff --git a/notebooks/01.2-exploration-opendoar.ipynb b/notebooks/01.2-exploration-opendoar.ipynb index 394152e..c0f56e6 100644 --- a/notebooks/01.2-exploration-opendoar.ipynb +++ b/notebooks/01.2-exploration-opendoar.ipynb @@ -297,7 +297,7 @@ ], "source": [ "opendoar_df = pd.read_csv('../data/raw/openDoar.tsv', delimiter='\\t',\n", - " converters={'repository_metadata.content_subjects_phrases': ast.literal_eval,\n", + " converters={'repository_metadata.content_subjects': ast.literal_eval,\n", " 'repository_metadata.alternativename': ast.literal_eval,\n", " 'repository_metadata.content_types': ast.literal_eval,\n", " 'organization': ast.literal_eval\n", diff --git a/notebooks/02-subjects&geographic.ipynb b/notebooks/02-subjects&geographic.ipynb index f6fa7b9..29e818e 100644 --- a/notebooks/02-subjects&geographic.ipynb +++ b/notebooks/02-subjects&geographic.ipynb @@ -101,13 +101,47 @@ " \n", " \n", " \n", - " re3data_id\n", - " repository_name\n", + " orgIdentifier\n", + " repositoryName\n", + " repositoryName.language\n", + " additionalName\n", + " repositoryURL\n", + " repositoryIdentifier\n", + " repositoryContact\n", + " description\n", + " description.language\n", " type\n", + " size\n", + " startDate\n", + " endDate\n", + " repositoryLanguage\n", " subject\n", - " provider_type\n", + " missionStatementURL\n", + " contentType\n", + " providerType\n", " keyword\n", " institution\n", + " policy\n", + " databaseAccess\n", + " databaseLicense\n", + " dataAccess\n", + " dataLicense\n", + " dataUploadType\n", + " dataUploadLicense\n", + " software\n", + " versioning\n", + " api\n", + " pidSystem\n", + " citationGuidelineURL\n", + " aidSystem\n", + " enhancedPublication\n", + " qualityManagement\n", + " certificate\n", + " metadataStandard\n", + " syndication\n", + " remarks\n", + " entryDate\n", + " lastUpdate\n", " \n", " \n", " \n", @@ -115,72 +149,305 @@ " 0\n", " r3d100000001\n", " Odum Institute Archive Dataverse\n", + " eng\n", + " []\n", + " https://dataverse.unc.edu/dataverse/odum\n", + " []\n", + " [\"https://dataverse.unc.edu/dataverse/odum#\", ...\n", + " The Odum Institute Archive Dataverse contains ...\n", + " eng\n", " [disciplinary]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", + " {\"size\": \"13 dataverses; 3.050 datasets\", \"upd...\n", + " NaN\n", + " NaN\n", + " [\"eng\"]\n", + " [{'name': '1 Humanities and Social Sciences', ...\n", + " NaN\n", + " [{'name': 'Databases', 'scheme': 'parse'}, {'n...\n", " [dataProvider]\n", " [FAIR, Middle East, crime, demography, economy...\n", - " [[Odum Institute for Research in Social Scienc...\n", + " [{'institutionName': 'Odum Institute for Resea...\n", + " [{\"policyName\": \"Collection Development Policy...\n", + " {\"databaseAccessType\": \"open\", \"databaseAcces...\n", + " [{\"databaseLicenseName\": \"CC0\", \"databaseLicen...\n", + " [{\"dataAccessType\": \"embargoed\", \"dataAccessRe...\n", + " [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"...\n", + " restricted\n", + " []\n", + " [\"DataVerse\"]\n", + " NaN\n", + " {}\n", + " [\"DOI\"]\n", + " NaN\n", + " []\n", + " unknown\n", + " yes\n", + " [\"other\"]\n", + " [{\"metadataStandardName\": \"DDI - Data Document...\n", + " {}\n", + " Odum Dataverse is covered by Thomson Reuters D...\n", + " 2013-06-10\n", + " 2021-07-06\n", " \n", " \n", " 1\n", " r3d100000002\n", " Access to Archival Databases\n", + " eng\n", + " [{'additionalName': 'AAD', 'additionalNameLang...\n", + " https://aad.archives.gov/aad/\n", + " [RRID:SCR_010479, RRID:nlx_157752]\n", + " [\"https://www.archives.gov/contact\"]\n", + " You will find in the Access to Archival Databa...\n", + " eng\n", " [disciplinary]\n", - " [1 Humanities and Social Sciences, 102 History...\n", + " {\"size\": \"\", \"updatedp\": \"\"}\n", + " 1985\n", + " NaN\n", + " [\"eng\", \"spa\"]\n", + " [{'name': '1 Humanities and Social Sciences', ...\n", + " https://www.archives.gov/publications/general-...\n", + " [{'name': 'Images', 'scheme': 'parse'}, {'name...\n", " [dataProvider]\n", " [US History]\n", - " [[The U.S. National Archives and Records Admin...\n", + " [{'institutionName': 'The U.S. National Archiv...\n", + " [{\"policyName\": \"Contribution Policy\", \"policy...\n", + " {\"databaseAccessType\": \"open\", \"databaseAcces...\n", + " []\n", + " [{\"dataAccessType\": \"open\", \"dataAccessRestric...\n", + " [{\"dataLicenseName\": \"Copyrights\", \"dataLicens...\n", + " restricted\n", + " []\n", + " [\"unknown\"]\n", + " no\n", + " {\"api\": \"https://www.archives.gov/developer#to...\n", + " [\"none\"]\n", + " https://aad.archives.gov/aad/help/getting-star...\n", + " []\n", + " unknown\n", + " unknown\n", + " []\n", + " []\n", + " {\"syndication\": \"http://www.archives.gov/socia...\n", + " NaN\n", + " 2012-07-04\n", + " 2021-05-25\n", " \n", " \n", " 2\n", " r3d100000004\n", " Datenbank Gesprochenes Deutsch\n", + " deu\n", + " [{'additionalName': 'DGD', 'additionalNameLang...\n", + " https://dgd.ids-mannheim.de/\n", + " []\n", + " [\"dgd@ids-mannheim.de\"]\n", + " The \"Database for Spoken German (DGD)\" is a co...\n", + " eng\n", " [disciplinary]\n", - " [1 Humanities and Social Sciences, 104 Linguis...\n", + " {\"size\": \"34 corpora\", \"updatedp\": \"2020-02-03\"}\n", + " 2012\n", + " NaN\n", + " [\"deu\"]\n", + " [{'name': '1 Humanities and Social Sciences', ...\n", + " https://dgd.ids-mannheim.de/dgd/pragdb.dgd_ext...\n", + " [{'name': 'Audiovisual data', 'scheme': 'parse...\n", " [dataProvider, serviceProvider]\n", " [Australian German, FOLK, German dialects, Pfe...\n", - " [[Institut für Deutsche Sprache, Archiv für Ge...\n", + " [{'institutionName': 'Institut für Deutsche Sp...\n", + " [{\"policyName\": \"Erfurter Aufruf zur Sicherung...\n", + " {\"databaseAccessType\": \"restricted\", \"databas...\n", + " []\n", + " [{\"dataAccessType\": \"restricted\", \"dataAccessR...\n", + " [{\"dataLicenseName\": \"other\", \"dataLicenseURL\"...\n", + " restricted\n", + " []\n", + " [\"other\"]\n", + " yes\n", + " {}\n", + " [\"none\"]\n", + " http://agd.ids-mannheim.de/konditionen.shtml\n", + " []\n", + " unknown\n", + " unknown\n", + " [\"RatSWD\"]\n", + " []\n", + " {}\n", + " NaN\n", + " 2012-07-20\n", + " 2020-08-27\n", " \n", " \n", " 3\n", " r3d100000005\n", " UNC Dataverse\n", + " eng\n", + " [{'additionalName': 'University of North Carol...\n", + " https://dataverse.unc.edu/\n", + " []\n", + " [\"https://dataverse.unc.edu/\", \"odumarchive@un...\n", + " UNC Dataverse is an open-source repository sof...\n", + " eng\n", " [institutional]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", + " {\"size\": \"186 dataverses; 25.272 studies; 229....\n", + " 2011\n", + " NaN\n", + " [\"eng\"]\n", + " [{'name': '1 Humanities and Social Sciences', ...\n", + " https://odum.unc.edu/about/mission-vision/\n", + " [{'name': 'Archived data', 'scheme': 'parse'},...\n", " [dataProvider, serviceProvider]\n", " [FAIR, census, demographic survey, demography,...\n", - " [[Odum Institute for Research in Social Scienc...\n", + " [{'institutionName': 'Odum Institute for Resea...\n", + " [{\"policyName\": \"Collection Development Policy...\n", + " {\"databaseAccessType\": \"open\", \"databaseAcces...\n", + " []\n", + " [{\"dataAccessType\": \"open\", \"dataAccessRestric...\n", + " [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"...\n", + " restricted\n", + " [{\"dataUploadLicenseName\": \"Data Deposit Form\"...\n", + " [\"DataVerse\"]\n", + " yes\n", + " {\"api\": \"https://guides.dataverse.org/en/lates...\n", + " [\"ARK\", \"DOI\", \"PURL\", \"URN\", \"hdl\"]\n", + " https://dataverse.org/best-practices/data-cita...\n", + " []\n", + " unknown\n", + " yes\n", + " []\n", + " [{\"metadataStandardName\": \"DDI - Data Document...\n", + " {}\n", + " UNC Dataverse is covered by Clarivate Data Cit...\n", + " 2012-07-23\n", + " 2021-08-11\n", " \n", " \n", " 4\n", " r3d100000006\n", " Archaeology Data Service\n", + " eng\n", + " [{'additionalName': 'ADS', 'additionalNameLang...\n", + " https://archaeologydataservice.ac.uk/\n", + " [FAIRsharing_doi:10.25504/FAIRsharing.hm1mfg]\n", + " [\"help@archaeologydataservice.ac.uk\", \"https:/...\n", + " The ADS is an accredited digital repository fo...\n", + " eng\n", " [disciplinary]\n", - " [1 Humanities and Social Sciences, 101 Ancient...\n", + " {\"size\": \"1837 results\", \"updatedp\": \"2020-05-...\n", + " 1996-10-01\n", + " NaN\n", + " [\"eng\"]\n", + " [{'name': '1 Humanities and Social Sciences', ...\n", + " https://archaeologydataservice.ac.uk/about/our...\n", + " [{'name': 'Archived data', 'scheme': 'parse'},...\n", " [dataProvider, serviceProvider]\n", " [FAIR, archaeology, cultural heritage, prehist...\n", - " [[Arts and Humanities Research Council, [AHRC]...\n", + " [{'institutionName': 'Arts and Humanities Rese...\n", + " [{\"policyName\": \"ADS Guides to good practice\",...\n", + " {\"databaseAccessType\": \"open\", \"databaseAcces...\n", + " [{\"databaseLicenseName\": \"CC\", \"databaseLicens...\n", + " [{\"dataAccessType\": \"open\", \"dataAccessRestric...\n", + " [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"...\n", + " restricted\n", + " [{\"dataUploadLicenseName\": \"Guidelines for Dep...\n", + " [\"other\"]\n", + " yes\n", + " {\"api\": \"https://archaeologydataservice.ac.uk/...\n", + " [\"DOI\"]\n", + " https://archaeologydataservice.ac.uk/advice/te...\n", + " []\n", + " unknown\n", + " yes\n", + " [\"other\"]\n", + " [{\"metadataStandardName\": \"DataCite Metadata S...\n", + " {\"syndication\": \"https://archaeologydataservic...\n", + " ADS is covered by Clarivate Data Citation Inde...\n", + " 2012-07-23\n", + " 2021-09-02\n", " \n", " \n", "\n", "" ], "text/plain": [ - " re3data_id repository_name type \\\n", - "0 r3d100000001 Odum Institute Archive Dataverse [disciplinary] \n", - "1 r3d100000002 Access to Archival Databases [disciplinary] \n", - "2 r3d100000004 Datenbank Gesprochenes Deutsch [disciplinary] \n", - "3 r3d100000005 UNC Dataverse [institutional] \n", - "4 r3d100000006 Archaeology Data Service [disciplinary] \n", + " orgIdentifier repositoryName repositoryName.language \\\n", + "0 r3d100000001 Odum Institute Archive Dataverse eng \n", + "1 r3d100000002 Access to Archival Databases eng \n", + "2 r3d100000004 Datenbank Gesprochenes Deutsch deu \n", + "3 r3d100000005 UNC Dataverse eng \n", + "4 r3d100000006 Archaeology Data Service eng \n", + "\n", + " additionalName \\\n", + "0 [] \n", + "1 [{'additionalName': 'AAD', 'additionalNameLang... \n", + "2 [{'additionalName': 'DGD', 'additionalNameLang... \n", + "3 [{'additionalName': 'University of North Carol... \n", + "4 [{'additionalName': 'ADS', 'additionalNameLang... \n", + "\n", + " repositoryURL \\\n", + "0 https://dataverse.unc.edu/dataverse/odum \n", + "1 https://aad.archives.gov/aad/ \n", + "2 https://dgd.ids-mannheim.de/ \n", + "3 https://dataverse.unc.edu/ \n", + "4 https://archaeologydataservice.ac.uk/ \n", + "\n", + " repositoryIdentifier \\\n", + "0 [] \n", + "1 [RRID:SCR_010479, RRID:nlx_157752] \n", + "2 [] \n", + "3 [] \n", + "4 [FAIRsharing_doi:10.25504/FAIRsharing.hm1mfg] \n", + "\n", + " repositoryContact \\\n", + "0 [\"https://dataverse.unc.edu/dataverse/odum#\", ... \n", + "1 [\"https://www.archives.gov/contact\"] \n", + "2 [\"dgd@ids-mannheim.de\"] \n", + "3 [\"https://dataverse.unc.edu/\", \"odumarchive@un... \n", + "4 [\"help@archaeologydataservice.ac.uk\", \"https:/... \n", + "\n", + " description description.language \\\n", + "0 The Odum Institute Archive Dataverse contains ... eng \n", + "1 You will find in the Access to Archival Databa... eng \n", + "2 The \"Database for Spoken German (DGD)\" is a co... eng \n", + "3 UNC Dataverse is an open-source repository sof... eng \n", + "4 The ADS is an accredited digital repository fo... eng \n", + "\n", + " type size \\\n", + "0 [disciplinary] {\"size\": \"13 dataverses; 3.050 datasets\", \"upd... \n", + "1 [disciplinary] {\"size\": \"\", \"updatedp\": \"\"} \n", + "2 [disciplinary] {\"size\": \"34 corpora\", \"updatedp\": \"2020-02-03\"} \n", + "3 [institutional] {\"size\": \"186 dataverses; 25.272 studies; 229.... \n", + "4 [disciplinary] {\"size\": \"1837 results\", \"updatedp\": \"2020-05-... \n", + "\n", + " startDate endDate repositoryLanguage \\\n", + "0 NaN NaN [\"eng\"] \n", + "1 1985 NaN [\"eng\", \"spa\"] \n", + "2 2012 NaN [\"deu\"] \n", + "3 2011 NaN [\"eng\"] \n", + "4 1996-10-01 NaN [\"eng\"] \n", "\n", " subject \\\n", - "0 [1 Humanities and Social Sciences, 111 Social ... \n", - "1 [1 Humanities and Social Sciences, 102 History... \n", - "2 [1 Humanities and Social Sciences, 104 Linguis... \n", - "3 [1 Humanities and Social Sciences, 111 Social ... \n", - "4 [1 Humanities and Social Sciences, 101 Ancient... \n", + "0 [{'name': '1 Humanities and Social Sciences', ... \n", + "1 [{'name': '1 Humanities and Social Sciences', ... \n", + "2 [{'name': '1 Humanities and Social Sciences', ... \n", + "3 [{'name': '1 Humanities and Social Sciences', ... \n", + "4 [{'name': '1 Humanities and Social Sciences', ... \n", "\n", - " provider_type \\\n", + " missionStatementURL \\\n", + "0 NaN \n", + "1 https://www.archives.gov/publications/general-... \n", + "2 https://dgd.ids-mannheim.de/dgd/pragdb.dgd_ext... \n", + "3 https://odum.unc.edu/about/mission-vision/ \n", + "4 https://archaeologydataservice.ac.uk/about/our... \n", + "\n", + " contentType \\\n", + "0 [{'name': 'Databases', 'scheme': 'parse'}, {'n... \n", + "1 [{'name': 'Images', 'scheme': 'parse'}, {'name... \n", + "2 [{'name': 'Audiovisual data', 'scheme': 'parse... \n", + "3 [{'name': 'Archived data', 'scheme': 'parse'},... \n", + "4 [{'name': 'Archived data', 'scheme': 'parse'},... \n", + "\n", + " providerType \\\n", "0 [dataProvider] \n", "1 [dataProvider] \n", "2 [dataProvider, serviceProvider] \n", @@ -194,12 +461,103 @@ "3 [FAIR, census, demographic survey, demography,... \n", "4 [FAIR, archaeology, cultural heritage, prehist... \n", "\n", - " institution \n", - "0 [[Odum Institute for Research in Social Scienc... \n", - "1 [[The U.S. National Archives and Records Admin... \n", - "2 [[Institut für Deutsche Sprache, Archiv für Ge... \n", - "3 [[Odum Institute for Research in Social Scienc... \n", - "4 [[Arts and Humanities Research Council, [AHRC]... " + " institution \\\n", + "0 [{'institutionName': 'Odum Institute for Resea... \n", + "1 [{'institutionName': 'The U.S. National Archiv... \n", + "2 [{'institutionName': 'Institut für Deutsche Sp... \n", + "3 [{'institutionName': 'Odum Institute for Resea... \n", + "4 [{'institutionName': 'Arts and Humanities Rese... \n", + "\n", + " policy \\\n", + "0 [{\"policyName\": \"Collection Development Policy... \n", + "1 [{\"policyName\": \"Contribution Policy\", \"policy... \n", + "2 [{\"policyName\": \"Erfurter Aufruf zur Sicherung... \n", + "3 [{\"policyName\": \"Collection Development Policy... \n", + "4 [{\"policyName\": \"ADS Guides to good practice\",... \n", + "\n", + " databaseAccess \\\n", + "0 {\"databaseAccessType\": \"open\", \"databaseAcces... \n", + "1 {\"databaseAccessType\": \"open\", \"databaseAcces... \n", + "2 {\"databaseAccessType\": \"restricted\", \"databas... \n", + "3 {\"databaseAccessType\": \"open\", \"databaseAcces... \n", + "4 {\"databaseAccessType\": \"open\", \"databaseAcces... \n", + "\n", + " databaseLicense \\\n", + "0 [{\"databaseLicenseName\": \"CC0\", \"databaseLicen... \n", + "1 [] \n", + "2 [] \n", + "3 [] \n", + "4 [{\"databaseLicenseName\": \"CC\", \"databaseLicens... \n", + "\n", + " dataAccess \\\n", + "0 [{\"dataAccessType\": \"embargoed\", \"dataAccessRe... \n", + "1 [{\"dataAccessType\": \"open\", \"dataAccessRestric... \n", + "2 [{\"dataAccessType\": \"restricted\", \"dataAccessR... \n", + "3 [{\"dataAccessType\": \"open\", \"dataAccessRestric... \n", + "4 [{\"dataAccessType\": \"open\", \"dataAccessRestric... \n", + "\n", + " dataLicense dataUploadType \\\n", + "0 [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"... restricted \n", + "1 [{\"dataLicenseName\": \"Copyrights\", \"dataLicens... restricted \n", + "2 [{\"dataLicenseName\": \"other\", \"dataLicenseURL\"... restricted \n", + "3 [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"... restricted \n", + "4 [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"... restricted \n", + "\n", + " dataUploadLicense software \\\n", + "0 [] [\"DataVerse\"] \n", + "1 [] [\"unknown\"] \n", + "2 [] [\"other\"] \n", + "3 [{\"dataUploadLicenseName\": \"Data Deposit Form\"... [\"DataVerse\"] \n", + "4 [{\"dataUploadLicenseName\": \"Guidelines for Dep... [\"other\"] \n", + "\n", + " versioning api \\\n", + "0 NaN {} \n", + "1 no {\"api\": \"https://www.archives.gov/developer#to... \n", + "2 yes {} \n", + "3 yes {\"api\": \"https://guides.dataverse.org/en/lates... \n", + "4 yes {\"api\": \"https://archaeologydataservice.ac.uk/... \n", + "\n", + " pidSystem \\\n", + "0 [\"DOI\"] \n", + "1 [\"none\"] \n", + "2 [\"none\"] \n", + "3 [\"ARK\", \"DOI\", \"PURL\", \"URN\", \"hdl\"] \n", + "4 [\"DOI\"] \n", + "\n", + " citationGuidelineURL aidSystem \\\n", + "0 NaN [] \n", + "1 https://aad.archives.gov/aad/help/getting-star... [] \n", + "2 http://agd.ids-mannheim.de/konditionen.shtml [] \n", + "3 https://dataverse.org/best-practices/data-cita... [] \n", + "4 https://archaeologydataservice.ac.uk/advice/te... [] \n", + "\n", + " enhancedPublication qualityManagement certificate \\\n", + "0 unknown yes [\"other\"] \n", + "1 unknown unknown [] \n", + "2 unknown unknown [\"RatSWD\"] \n", + "3 unknown yes [] \n", + "4 unknown yes [\"other\"] \n", + "\n", + " metadataStandard \\\n", + "0 [{\"metadataStandardName\": \"DDI - Data Document... \n", + "1 [] \n", + "2 [] \n", + "3 [{\"metadataStandardName\": \"DDI - Data Document... \n", + "4 [{\"metadataStandardName\": \"DataCite Metadata S... \n", + "\n", + " syndication \\\n", + "0 {} \n", + "1 {\"syndication\": \"http://www.archives.gov/socia... \n", + "2 {} \n", + "3 {} \n", + "4 {\"syndication\": \"https://archaeologydataservic... \n", + "\n", + " remarks entryDate lastUpdate \n", + "0 Odum Dataverse is covered by Thomson Reuters D... 2013-06-10 2021-07-06 \n", + "1 NaN 2012-07-04 2021-05-25 \n", + "2 NaN 2012-07-20 2020-08-27 \n", + "3 UNC Dataverse is covered by Clarivate Data Cit... 2012-07-23 2021-08-11 \n", + "4 ADS is covered by Clarivate Data Citation Inde... 2012-07-23 2021-09-02 " ] }, "execution_count": 3, @@ -208,40 +566,23 @@ } ], "source": [ - "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t', \n", + "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t',\n", " converters={'subject': ast.literal_eval,\n", " 'keyword': ast.literal_eval,\n", - " 'additional_name': ast.literal_eval,\n", - " 'repository_id': ast.literal_eval,\n", + " 'additionalName': ast.literal_eval,\n", + " 'repositoryIdentifier': ast.literal_eval,\n", " 'type': ast.literal_eval,\n", - " 'content_type': ast.literal_eval,\n", - " 'provider_type': ast.literal_eval,\n", + " 'contentType': ast.literal_eval,\n", + " 'providerType': ast.literal_eval,\n", " 'institution': ast.literal_eval\n", - " },\n", - " usecols=['re3data_id', 'repository_name', 'subject', 'keyword', 'type', 'provider_type', 'institution'])\n", + " })\n", + "\n", "re3data_df.head()" ] }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**HERE I AM FILTERING SERVICE PROVIDERS OUT!!**" - ] - }, { "cell_type": "code", "execution_count": 4, - "metadata": {}, - "outputs": [], - "source": [ - "re3data_df = re3data_df.explode('provider_type')\n", - "re3data_df = re3data_df[re3data_df.provider_type != 'serviceProvider']" - ] - }, - { - "cell_type": "code", - "execution_count": 5, "metadata": { "scrolled": false }, @@ -267,81 +608,335 @@ " \n", " \n", " \n", - " re3data_id\n", - " repository_name\n", + " orgIdentifier\n", + " repositoryName\n", + " repositoryName.language\n", + " additionalName\n", + " repositoryURL\n", + " repositoryIdentifier\n", + " repositoryContact\n", + " description\n", + " description.language\n", " type\n", + " size\n", + " startDate\n", + " endDate\n", + " repositoryLanguage\n", " subject\n", - " provider_type\n", + " missionStatementURL\n", + " contentType\n", + " providerType\n", " keyword\n", " institution\n", + " policy\n", + " databaseAccess\n", + " databaseLicense\n", + " dataAccess\n", + " dataLicense\n", + " dataUploadType\n", + " dataUploadLicense\n", + " software\n", + " versioning\n", + " api\n", + " pidSystem\n", + " citationGuidelineURL\n", + " aidSystem\n", + " enhancedPublication\n", + " qualityManagement\n", + " certificate\n", + " metadataStandard\n", + " syndication\n", + " remarks\n", + " entryDate\n", + " lastUpdate\n", " \n", " \n", " \n", " \n", " count\n", - 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"top [1 Humanities and Social Sciences, 2 Life Scie... dataProvider \n", - "freq 200 2459 \n", + " repositoryURL repositoryIdentifier \\\n", + "count 2716 2739 \n", + "unique 2713 864 \n", + "top http://icgem.gfz-potsdam.de/home [] \n", + "freq 2 1876 \n", "\n", - " keyword institution \n", - "count 2467 2467 \n", - "unique 2248 2447 \n", - "top [multidisciplinary] [[National Center for Biotechnology Informatio... \n", - "freq 181 6 " + " repositoryContact description \\\n", + "count 2739 2739 \n", + "unique 2459 2737 \n", + "top [] The National Archives and Records Administrati... \n", + "freq 202 2 \n", + "\n", + " description.language type size \\\n", + "count 2739 2739 2739 \n", + "unique 6 9 1289 \n", + "top eng [disciplinary] {\"size\": \"\", \"updatedp\": \"\"} \n", + "freq 2723 1733 1450 \n", + "\n", + " startDate endDate repositoryLanguage \\\n", + "count 1776 157 2739 \n", + "unique 352 80 107 \n", + "top 2008 2015 [\"eng\"] \n", + "freq 92 11 2063 \n", + "\n", + " subject \\\n", + "count 2739 \n", + "unique 1389 \n", + "top [{'name': '1 Humanities and Social Sciences', ... \n", + "freq 226 \n", + "\n", + " missionStatementURL \\\n", + "count 2318 \n", + "unique 2249 \n", + "top https://learn.scholarsportal.info/all-guides/d... \n", + "freq 14 \n", + "\n", + " contentType providerType \\\n", + "count 2739 2739 \n", + "unique 1338 5 \n", + "top [{'name': 'Standard office documents', 'scheme... [dataProvider] \n", + "freq 30 1771 \n", + "\n", + " keyword \\\n", + "count 2739 \n", + "unique 2504 \n", + "top [multidisciplinary] \n", + "freq 193 \n", + "\n", + " institution policy \\\n", + "count 2739 2739 \n", + "unique 2720 2319 \n", + "top [{'institutionName': 'National Center for Biot... [][] \n", + "freq 6 312 \n", + "\n", + " databaseAccess databaseLicense \\\n", + "count 2739 2739 \n", + "unique 12 375 \n", + "top {\"databaseAccessType\": \"open\", \"databaseAcces... [] \n", + "freq 2571 2159 \n", + "\n", + " dataAccess \\\n", + "count 2739 \n", + "unique 145 \n", + "top [{\"dataAccessType\": \"open\", \"dataAccessRestric... \n", + "freq 1269 \n", + "\n", + " dataLicense dataUploadType \\\n", + "count 2739 2711 \n", + "unique 2263 3 \n", + "top [{\"dataLicenseName\": \"CC\", \"dataLicenseURL\": \"... restricted \n", + "freq 64 1793 \n", + "\n", + " dataUploadLicense software versioning api pidSystem \\\n", + "count 2739 2739 1316 2739 2739 \n", + "unique 681 23 2 1146 29 \n", + "top [] [\"unknown\"] yes {} [\"none\"] \n", + "freq 2013 1226 1108 1498 1361 \n", + "\n", + " citationGuidelineURL aidSystem \\\n", + "count 1512 2739 \n", + "unique 1321 12 \n", + "top https://dataverse.org/best-practices/data-cita... [] \n", + "freq 72 2155 \n", + "\n", + " enhancedPublication qualityManagement certificate metadataStandard \\\n", + "count 2737 2739 2739 2739 \n", + "unique 3 3 14 172 \n", + "top unknown yes [] [] \n", + "freq 1608 1515 2509 1669 \n", + "\n", + " syndication remarks entryDate lastUpdate \n", + "count 2739 1674 2739 2739 \n", + "unique 563 1656 1275 740 \n", + "top {} is covered by Elsevier. 2016-05-10 2021-09-03 \n", + "freq 2162 14 20 137 " ] }, - "execution_count": 5, + "execution_count": 4, "metadata": {}, "output_type": "execute_result" } @@ -357,6 +952,285 @@ "**openDOAR**" ] }, + { + "cell_type": "code", + "execution_count": 48, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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0175{\"name\": \"hku theses online\", \"language\": \"en\"}[]http://hub.hku.hk/handle/10722/1057this is an institutional repository providing ...institutional[\"zh\", \"en\"]2021-03-25 10:16:182005-12-21 12:44:08[multidisciplinary][bibliographic_references, theses_and_disserta...[{'name': 'university of hong kong', 'alternat...[]{\"name\": \"dspace\", \"version\": \"cris-5.3.1-snap...NaNyesfully_functionalNaN11850.0
164{\"name\": \"research support scheme - central eu...[]http://rss.archives.ceu.hu/this is an institutional repository collecting...institutional[\"cs\", \"en\", \"hu\", \"ru\"]2021-03-25 09:48:312006-01-04 14:59:30[multidisciplinary][unpub_reports_and_working_papers][{'name': 'central european university', 'alte...[]{\"name\": \"eprints\", \"version\": \"2.2.1\"}http://rss.archives.ceu.hu/perl/oai2yesfully_functionalNaN164.0
2151{\"name\": \"cadmus, eui research repository\", \"l...[]http://cadmus.eui.eu/cadmus is the name of the eui research reposit...institutional[\"nl\", \"en\", \"fr\", \"de\", \"it\"]2021-09-13 13:35:362006-01-04 12:07:07[history and archaeology, multidisciplinary, s...[journal_articles, theses_and_dissertations, u...[{'name': 'european university institute', 'al...[{\"policy_url\": \"https://www.eui.eu/research/e...{\"name\": \"dspace\", \"version\": \"5.2\"}http://cadmus.eui.eu/oai/requestyesfully_functional3867.024869.0
3105{\"name\": \"document server@uhasselt\", \"language...[]https://doclib.uhasselt.be/dspace/this site is a university repository providing...institutional[\"nl\", \"en\", \"fr\", \"de\"]2021-04-16 15:23:522006-01-24 15:46:44[multidisciplinary][journal_articles, conference_and_workshop_pap...[{'name': 'uhasselt', 'alternativeName': 'hass...[]{\"name\": \"dspace\", \"version\": \"1.7.2\"}http://doclib.uhasselt.be/dspace-oai/requestyesfully_functional0.027376.0
4101{\"name\": \"utrecht university repository\", \"lan...[]http://dspace.library.uu.nlthis site is a university repository providing...institutional[\"nl\", \"en\"]2021-04-16 15:22:032006-01-13 12:55:13[multidisciplinary][journal_articles, conference_and_workshop_pap...[{'name': 'university of utrecht', 'alternativ...[]{\"name\": \"dspace\", \"version\": \"\"}https://dspace.library.uu.nl/oai/requestyesfully_functional1686.0185637.0
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" disciplinary\n", - " [earth and planetary sciences]\n", - " [[istituto nazionale di geofisica e vulcanolog...\n", - " \n", - " \n", - "\n", - "" - ], - "text/plain": [ - " opendoar_id repository_name \\\n", - "0 101 utrecht university repository \n", - "1 115 dspace at indian institute of management kozhi... \n", - "2 41 caltech engineering and science online \n", - "3 119 dcu online research access service \n", - "4 129 earth-prints repository \n", - "\n", - " type subject \\\n", - "0 institutional [multidisciplinary] \n", - "1 institutional [ecology and environment, social sciences gene... \n", - "2 institutional [biology and biochemistry, chemistry and chemi... \n", - "3 institutional [multidisciplinary] \n", - "4 disciplinary [earth and planetary sciences] \n", - "\n", - " institution \n", - "0 [[university of utrecht, [universiteit utrecht... \n", - "1 [[indian institute of management kozhikode, [i... \n", - "2 [[california institute of technology, [caltech... \n", - "3 [[dublin city university, [dcu], ie, [], , htt... \n", - 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full_nameshort_namefs_urlurlcountriessubjects
0GenBankGenBankhttps://fairsharing.org/10.25504/FAIRsharing.9...https://www.ncbi.nlm.nih.gov/genbank/European Union,Japan,United StatesBioinformatics,Data Management,Data Submission...
1GlycoNAVIGlycoNAVIhttps://fairsharing.org/10.25504/FAIRsharing.w...https://glyconavi.org/JapanChemistry,Glycomics,Life Science,Organic Chemi...10511archive1NaNNaNdisk0/00/00/00/102010-01-06 13:43:482011-07-18 05:40:132010-01-06 13:43:48institutionalNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN0NaNNaNNaNhttp://www.diva-portal.org/mdh/Academic Archive On-line (Mälardalen Universit...http://www.diva-portal.org/oai/mdh/OAINaNNaNNaNNaNTRUETRUENaNNaNNaNseUppsala59.866717.6333divageoname_2_SEotherNaN2005-12-08 13:15:22NaNNaN0001000,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,100,100...NaNNaNNaNNaN[opendoar, celestial][258, 526]NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
2ADHDgeneADHDgenehttps://fairsharing.org/10.25504/FAIRsharing.m...http://adhd.psych.ac.cn/ChinaBiomedical Science,Genetics1000274archive1NaNNaNdisk0/00/00/10/002010-01-06 13:45:012011-07-06 08:21:212010-01-06 13:45:01subjectNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN0NaNNaNNaNhttp://pam.pisharp.org/PAM - Portuguese Archive of MathematicsNaNNaNNaNNaNNaNTRUETRUENaNNaNNaNptBellevue, WA47.6034-122.155dspacegeoname_2_PTotherNaN2006-05-04 10:48:14NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
3Allele frequency resource for research and tea...ALFREDhttps://fairsharing.org/10.25504/FAIRsharing.y...http://alfred.med.yale.eduUnited StatesLife Science1000120archive91NaNNaNdisk0/00/01/00/012015-08-08 14:52:112016-03-21 19:44:012015-08-08 14:52:11subjectNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNhttp://edoc.sub.uni-hamburg.de/klimawandel/Klimawandel Dokumentenserverhttp://edoc.sub.uni-hamburg.de/klimawandel/oaiNaNNaNNaNThe \"Documentenserver Klimawandel\" (Repository...TRUETRUETRUE[KLIMZUG projects, Climate Service Center 2.0,...[http://www.climateservicecenter.de/, http://w...deHamburg53.55119.9937opusgeoname_2_DEother[GF, GE, HD, G1, S1]2015-07-02 08:08:31NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN[opendoar, celestial][3408, 5881]NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
4Animal Transcription Factor DatabaseAnimalTFDBhttps://fairsharing.org/10.25504/FAIRsharing.e...http://bioinfo.life.hust.edu.cn/AnimalTFDB/ChinaLife Science1000811archive404NaNNaNdisk0/00/01/00/082015-08-08 14:52:262016-03-21 19:43:512015-08-08 14:52:26institutionalNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNhttp://creativematter.skidmore.edu/Creative Matter | Skidmore College Researchhttp://creativematter.skidmore.edu/do/oai/NaNhttp://creativematter.skidmore.edu/recent.rssNaNWelcome to Creative Matter, a repository for t...TRUEFALSEFALSESkidmore Collegehttp://www.skidmore.edu/usSaratoga Springs43.0961-73.7818bepressgeoname_2_USotherNaN2015-07-06 17:35:50NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNcelestial5882NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
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" ], "text/plain": [ - " full_name short_name \\\n", - "0 GenBank GenBank \n", - "1 GlycoNAVI GlycoNAVI \n", - "2 ADHDgene ADHDgene \n", - "3 Allele frequency resource for research and tea... ALFRED \n", - "4 Animal Transcription Factor Database AnimalTFDB \n", + " eprintid rev_number eprint_status userid importid source \\\n", + "0 1 633 archive 1 NaN NaN \n", + "1 10 511 archive 1 NaN NaN \n", + "2 1000 274 archive 1 NaN NaN \n", + "3 10001 20 archive 91 NaN NaN \n", + "4 10008 11 archive 404 NaN NaN \n", "\n", - " fs_url \\\n", - "0 https://fairsharing.org/10.25504/FAIRsharing.9... \n", - "1 https://fairsharing.org/10.25504/FAIRsharing.w... \n", - "2 https://fairsharing.org/10.25504/FAIRsharing.m... \n", - "3 https://fairsharing.org/10.25504/FAIRsharing.y... \n", - "4 https://fairsharing.org/10.25504/FAIRsharing.e... \n", + " dir datestamp lastmod \\\n", + "0 disk0/00/00/00/01 2010-01-06 13:43:48 2011-07-18 05:40:07 \n", + "1 disk0/00/00/00/10 2010-01-06 13:43:48 2011-07-18 05:40:13 \n", + "2 disk0/00/00/10/00 2010-01-06 13:45:01 2011-07-06 08:21:21 \n", + "3 disk0/00/01/00/01 2015-08-08 14:52:11 2016-03-21 19:44:01 \n", + "4 disk0/00/01/00/08 2015-08-08 14:52:26 2016-03-21 19:43:51 \n", "\n", - " url \\\n", - "0 https://www.ncbi.nlm.nih.gov/genbank/ \n", - "1 https://glyconavi.org/ \n", - "2 http://adhd.psych.ac.cn/ \n", - "3 http://alfred.med.yale.edu \n", - "4 http://bioinfo.life.hust.edu.cn/AnimalTFDB/ \n", + " status_changed type succeeds commentary \\\n", + "0 2010-01-06 13:43:48 subject NaN NaN \n", + "1 2010-01-06 13:43:48 institutional NaN NaN \n", + "2 2010-01-06 13:45:01 subject NaN NaN \n", + "3 2015-08-08 14:52:11 subject NaN NaN \n", + "4 2015-08-08 14:52:26 institutional NaN NaN \n", "\n", - " countries \\\n", - "0 European Union,Japan,United States \n", - "1 Japan \n", - "2 China \n", - "3 United States \n", - "4 China \n", + " metadata_visibility latitude longitude relation_type relation_uri \\\n", + "0 show NaN NaN NaN NaN \n", + "1 show NaN NaN NaN NaN \n", + "2 show NaN NaN NaN NaN \n", + "3 show NaN NaN NaN NaN \n", + "4 show NaN NaN NaN NaN \n", "\n", - " subjects \n", - "0 Bioinformatics,Data Management,Data Submission... \n", - "1 Chemistry,Glycomics,Life Science,Organic Chemi... \n", - "2 Biomedical Science,Genetics \n", - "3 Life Science \n", - "4 Life Science " + " item_issues_id item_issues_type item_issues_description \\\n", + "0 NaN NaN NaN \n", + "1 NaN NaN NaN \n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " item_issues_timestamp item_issues_status item_issues_reported_by \\\n", + "0 NaN NaN NaN \n", + "1 NaN NaN NaN \n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " item_issues_resolved_by item_issues_comment item_issues_count \\\n", + "0 NaN NaN 0 \n", + "1 NaN NaN 0 \n", + "2 NaN NaN 0 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " sword_depositor sword_slug exemplar \\\n", + "0 NaN NaN NaN \n", + "1 NaN NaN NaN \n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " home_page \\\n", + "0 http://archivesic.ccsd.cnrs.fr/ \n", + "1 http://www.diva-portal.org/mdh/ \n", + "2 http://pam.pisharp.org/ \n", + "3 http://edoc.sub.uni-hamburg.de/klimawandel/ \n", + "4 http://creativematter.skidmore.edu/ \n", + "\n", + " title \\\n", + "0 @RCHIVESIC \n", + "1 Academic Archive On-line (Mälardalen Universit... \n", + "2 PAM - Portuguese Archive of Mathematics \n", + "3 Klimawandel Dokumentenserver \n", + "4 Creative Matter | Skidmore College Research \n", + "\n", + " oai_pmh sword_endpoint \\\n", + "0 http://archivesic.ccsd.cnrs.fr/oai/oai.php NaN \n", + "1 http://www.diva-portal.org/oai/mdh/OAI NaN \n", + "2 NaN NaN \n", + "3 http://edoc.sub.uni-hamburg.de/klimawandel/oai NaN \n", + "4 http://creativematter.skidmore.edu/do/oai/ NaN \n", + "\n", + " rss_feed twitter_feed \\\n", + "0 NaN NaN \n", + "1 NaN NaN \n", + "2 NaN NaN \n", + "3 NaN NaN \n", + "4 http://creativematter.skidmore.edu/recent.rss NaN \n", + "\n", + " description fulltext open_access \\\n", + "0 NaN NaN NaN \n", + "1 NaN TRUE TRUE \n", + "2 NaN TRUE TRUE \n", + "3 The \"Documentenserver Klimawandel\" (Repository... TRUE TRUE \n", + "4 Welcome to Creative Matter, a repository for t... TRUE FALSE \n", + "\n", + " mandate organisation_title \\\n", + "0 NaN NaN \n", + "1 NaN NaN \n", + "2 NaN NaN \n", + "3 TRUE [KLIMZUG projects, Climate Service Center 2.0,... \n", + "4 FALSE Skidmore College \n", + "\n", + " organisation_home_page location_country \\\n", + "0 NaN fr \n", + "1 NaN se \n", + "2 NaN pt \n", + "3 [http://www.climateservicecenter.de/, http://w... de \n", + "4 http://www.skidmore.edu/ us \n", + "\n", + " location_city location_latitude location_longitude software \\\n", + "0 NaN NaN NaN hal \n", + "1 Uppsala 59.8667 17.6333 diva \n", + "2 Bellevue, WA 47.6034 -122.155 dspace \n", + "3 Hamburg 53.5511 9.9937 opus \n", + "4 Saratoga Springs 43.0961 -73.7818 bepress \n", + "\n", + " geoname version subjects date note \\\n", + "0 geoname_2_FR other NaN 2002-05-17 19:24:41 NaN \n", + "1 geoname_2_SE other NaN 2005-12-08 13:15:22 NaN \n", + "2 geoname_2_PT other NaN 2006-05-04 10:48:14 NaN \n", + "3 geoname_2_DE other [GF, GE, HD, G1, S1] 2015-07-02 08:08:31 NaN \n", + "4 geoname_2_US other NaN 2015-07-06 17:35:50 NaN \n", + "\n", + " suggestions activity_low activity_medium activity_high recordcount \\\n", + "0 NaN 0 0 0 25 \n", + "1 NaN 0 0 0 100 \n", + "2 NaN NaN NaN NaN NaN \n", + "3 NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN \n", + "\n", + " recordhistory fulltexts_total \\\n", + "0 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,... NaN \n", + "1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,100,100... NaN \n", + "2 NaN NaN \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " fulltexts_docs fulltexts_rtotal fulltexts_rdocs registry_name \\\n", + "0 NaN NaN NaN [opendoar, celestial] \n", + "1 NaN NaN NaN [opendoar, celestial] \n", + "2 NaN NaN NaN NaN \n", + "3 NaN NaN NaN [opendoar, celestial] \n", + "4 NaN NaN NaN celestial \n", + "\n", + " registry_id submit_to submitted_to_name submitted_to_done \\\n", + "0 [58, 669] NaN NaN NaN \n", + "1 [258, 526] NaN NaN NaN \n", + "2 NaN NaN NaN NaN \n", + "3 [3408, 5881] NaN NaN NaN \n", + "4 5882 NaN NaN NaN \n", + "\n", + " webometrics_rank webometrics_size webometrics_visibility \\\n", + "0 NaN NaN NaN \n", + "1 NaN NaN NaN \n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " webometrics_rich_files webometrics_scholar monthly_deposits total_deposits \\\n", + "0 NaN NaN NaN NaN \n", + "1 NaN NaN NaN NaN \n", + "2 NaN NaN NaN NaN \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " association \n", + "0 NaN \n", + "1 NaN \n", + "2 NaN \n", + "3 NaN \n", + "4 NaN " ] }, - "execution_count": 11, + "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ - "fairsharing_df = pd.read_csv('../data/raw/FAIRsharingDBrec_summary20210304.csv', \n", - " delimiter='|', header=0,\n", - " names=['full_name', 'short_name', 'fs_url', 'url', 'countries', 'subjects'])\n", - "fairsharing_df.head()" + "roar_df = pd.read_csv('../data/raw/export_roar_CSV.csv', dtype='str')\n", + "roar_df = roar_df.groupby('eprintid').aggregate(set)\n", + "\n", + "def value_or_list(cell_set):\n", + " copy = set(cell_set)\n", + " copy.discard(np.nan) \n", + " if len(copy) == 0:\n", + " return np.nan\n", + " if len(copy) == 1:\n", + " return copy.pop()\n", + " return list(copy)\n", + " \n", + "roar_df = roar_df.applymap(value_or_list)\n", + "roar_df.reset_index(inplace=True)\n", + "\n", + "roar_df.head()" ] }, { @@ -1261,73 +2417,1297 @@ " \n", " \n", " \n", - " full_name\n", - " short_name\n", - " fs_url\n", - " url\n", - " countries\n", + " eprintid\n", + " rev_number\n", + " eprint_status\n", + " userid\n", + " importid\n", + " source\n", + " dir\n", + " datestamp\n", + " lastmod\n", + " status_changed\n", + " type\n", + " succeeds\n", + " commentary\n", + " metadata_visibility\n", + " latitude\n", + " longitude\n", + " relation_type\n", + " relation_uri\n", + " item_issues_id\n", + " item_issues_type\n", + " item_issues_description\n", + " item_issues_timestamp\n", + " item_issues_status\n", + " item_issues_reported_by\n", + " item_issues_resolved_by\n", + " item_issues_comment\n", + " item_issues_count\n", + " sword_depositor\n", + " sword_slug\n", + " exemplar\n", + " home_page\n", + " title\n", + " oai_pmh\n", + " sword_endpoint\n", + " rss_feed\n", + " twitter_feed\n", + " description\n", + " fulltext\n", + " open_access\n", + " mandate\n", + " organisation_title\n", + " organisation_home_page\n", + " location_country\n", + " location_city\n", + " 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idtypeattributes.created-atattributes.updated-atattributes.metadata.doiattributes.metadata.nameattributes.metadata.statusattributes.metadata.contactsattributes.metadata.homepageattributes.metadata.identifierattributes.metadata.descriptionattributes.metadata.support-linksattributes.metadata.year-creationattributes.metadata.data-processesattributes.legacy-idsattributes.fairsharing-registryattributes.record-typeattributes.subjectsattributes.domainsattributes.taxonomiesattributes.user-defined-tagsattributes.countriesattributes.nameattributes.abbreviationattributes.urlattributes.doiattributes.fairsharing-licenceattributes.descriptionattributes.publicationsattributes.licence-linksattributes.metadata.citationsattributes.metadata.abbreviationattributes.metadata.access-pointsattributes.metadata.associated-toolsattributes.metadata.deprecation-dateattributes.metadata.deprecation-reasonattributes.metadata.tombstone
01723fairsharing-records2014-11-04T15:23:40.000Z2021-09-30T11:39:06.829Z10.25504/FAIRsharing.8t18teCell Image Libraryready[{'contact-name': 'David Orloff', 'contact-ema...http://www.cellimagelibrary.org1723This library is a public and easily accessible...[{'url': 'http://www.cellimagelibrary.org/page...2010.0[{'name': 'live update', 'type': 'data release...[biodbcore-000180, bsg-d000180]Databaserepository[Cell Biology, Life Science][Cell, Microscopy, Light microscopy, Electron ...[All][][United States]FAIRsharing record for: Cell Image LibraryNonehttps://fairsharing.org/10.25504/FAIRsharing.8...10.25504/FAIRsharing.8t18tehttps://creativecommons.org/licenses/by-sa/4.0...This FAIRsharing record describes: This librar...[{'id': 232, 'pubmed_id': 23203874, 'title': '...[{'licence-name': 'Cell Image Library Data Pol...NaNNaNNaNNaNNaNNaNNaN
13101fairsharing-records2020-09-16T08:49:13.000Z2021-09-30T11:36:45.452ZNaNWHOI Ship Data-Grabber SystemreadyNaNhttp://4dgeo.whoi.edu/shipdata/SDG_shipdata.html3101The WHOI Ship DataGrabber system provides the ...[{'url': 'http://4dgeo.whoi.edu/shipdata/SDG_o...2004.0[{'url': 'http://4dgeo.whoi.edu/sdg-bin/dv_mai...[biodbcore-001609, bsg-d001609]Databaserepository[Earth Science, Water Research, Oceanography][][Not applicable][subseafloor environments][United States]FAIRsharing record for: WHOI Ship Data-Grabber...Nonehttps://fairsharing.org/fairsharing_records/3101Nonehttps://creativecommons.org/licenses/by-sa/4.0...This FAIRsharing record describes: The WHOI Sh...[][{'licence-name': 'NDSF Data Archive Policy', ...NaNNaNNaNNaNNaNNaNNaN
22649fairsharing-records2018-08-07T20:23:32.000Z2021-09-30T11:39:07.898ZNaNElectron Microscope Public Image Archiveready[{'contact-name': 'General contact', 'contact-...https://www.ebi.ac.uk/pdbe/emdb/empiar/2649EMPIAR, the Electron Microscopy Public Image A...[{'url': 'https://www.ebi.ac.uk/support/EMPIAR...2015.0[{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi...[biodbcore-001140, bsg-d001140]Databaserepository[Bioinformatics, Biology][Protein image, Microscopy, Electron microscop...[All][][Greece, Czech Republic, United Kingdom, Icela...FAIRsharing record for: Electron Microscope Pu...EMPIARhttps://fairsharing.org/fairsharing_records/2649Nonehttps://creativecommons.org/licenses/by-sa/4.0...This FAIRsharing record describes: EMPIAR, the...[{'id': 2232, 'pubmed_id': 27067018, 'title': ...[{'licence-name': 'EMBL-EBI Terms of Use', 'li...[{'doi': '10.1038/nmeth.3806', 'pubmed-id': 27...EMPIAR[{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi...[{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi...NaNNaNNaN
32657fairsharing-records2018-08-13T15:12:11.000Z2021-09-30T11:37:28.736Z10.25504/FAIRsharing.tnByoGClinicalStudyDataRequest.comready[{'contact-email': 'support@clinicalstudydatar...https://clinicalstudydatarequest.com/2657ClinicalStudyDataRequest.com (CSDR) is a conso...[{'url': 'https://clinicalstudydatarequest.com...2014.0[{'url': 'https://clinicalstudydatarequest.com...[biodbcore-001149, bsg-d001149]Databaserepository[Preclinical Studies, Biomedical Science][][Homo sapiens][][Worldwide]FAIRsharing record for: ClinicalStudyDataReque...CSDRhttps://fairsharing.org/10.25504/FAIRsharing.t...10.25504/FAIRsharing.tnByoGhttps://creativecommons.org/licenses/by-sa/4.0...This FAIRsharing record describes: ClinicalStu...[][{'licence-name': 'CSDR Data Sharing Agreement...NaNCSDRNaNNaNNaNNaNNaN
42078fairsharing-records2014-11-04T15:23:40.000Z2021-09-30T11:34:43.129Z10.25504/FAIRsharing.3axym7Germplasm Resources Information Networkready[{'contact-email': 'dbmu@ars-grin.gov'}]https://www.ars-grin.gov/2078GRIN provides National Genetic Resources Progr...[{'url': 'https://www.ars-grin.gov/Pages/Colle...2010.0[{'url': 'https://www.ars-grin.gov/', 'name': ...[biodbcore-000546, bsg-d000546]Databaserepository[Life Science][Cell, Cell culture, Germplasm][Bacteria, Metazoa, Viridiplantae][][United States]FAIRsharing record for: Germplasm Resources In...GRINhttps://fairsharing.org/10.25504/FAIRsharing.3...10.25504/FAIRsharing.3axym7https://creativecommons.org/licenses/by-sa/4.0...This FAIRsharing record describes: GRIN provid...[][]NaNGRINNaNNaNNaNNaNNaN
\n", + "" + ], + "text/plain": [ + " id type attributes.created-at \\\n", + "0 1723 fairsharing-records 2014-11-04T15:23:40.000Z \n", + "1 3101 fairsharing-records 2020-09-16T08:49:13.000Z \n", + "2 2649 fairsharing-records 2018-08-07T20:23:32.000Z \n", + "3 2657 fairsharing-records 2018-08-13T15:12:11.000Z \n", + "4 2078 fairsharing-records 2014-11-04T15:23:40.000Z \n", + "\n", + " attributes.updated-at attributes.metadata.doi \\\n", + "0 2021-09-30T11:39:06.829Z 10.25504/FAIRsharing.8t18te \n", + "1 2021-09-30T11:36:45.452Z NaN \n", + "2 2021-09-30T11:39:07.898Z NaN \n", + "3 2021-09-30T11:37:28.736Z 10.25504/FAIRsharing.tnByoG \n", + "4 2021-09-30T11:34:43.129Z 10.25504/FAIRsharing.3axym7 \n", + "\n", + " attributes.metadata.name attributes.metadata.status \\\n", + "0 Cell Image Library ready \n", + "1 WHOI Ship Data-Grabber System ready \n", + "2 Electron Microscope Public Image Archive ready \n", + "3 ClinicalStudyDataRequest.com ready \n", + "4 Germplasm Resources Information Network ready \n", + "\n", + " attributes.metadata.contacts \\\n", + "0 [{'contact-name': 'David Orloff', 'contact-ema... \n", + "1 NaN \n", + "2 [{'contact-name': 'General contact', 'contact-... \n", + "3 [{'contact-email': 'support@clinicalstudydatar... \n", + "4 [{'contact-email': 'dbmu@ars-grin.gov'}] \n", + "\n", + " attributes.metadata.homepage \\\n", + "0 http://www.cellimagelibrary.org \n", + "1 http://4dgeo.whoi.edu/shipdata/SDG_shipdata.html \n", + "2 https://www.ebi.ac.uk/pdbe/emdb/empiar/ \n", + "3 https://clinicalstudydatarequest.com/ \n", + "4 https://www.ars-grin.gov/ \n", + "\n", + " attributes.metadata.identifier \\\n", + "0 1723 \n", + "1 3101 \n", + "2 2649 \n", + "3 2657 \n", + "4 2078 \n", + "\n", + " attributes.metadata.description \\\n", + "0 This library is a public and easily accessible... \n", + "1 The WHOI Ship DataGrabber system provides the ... \n", + "2 EMPIAR, the Electron Microscopy Public Image A... \n", + "3 ClinicalStudyDataRequest.com (CSDR) is a conso... \n", + "4 GRIN provides National Genetic Resources Progr... \n", + "\n", + " attributes.metadata.support-links \\\n", + "0 [{'url': 'http://www.cellimagelibrary.org/page... \n", + "1 [{'url': 'http://4dgeo.whoi.edu/shipdata/SDG_o... \n", + "2 [{'url': 'https://www.ebi.ac.uk/support/EMPIAR... \n", + "3 [{'url': 'https://clinicalstudydatarequest.com... \n", + "4 [{'url': 'https://www.ars-grin.gov/Pages/Colle... \n", + "\n", + " attributes.metadata.year-creation \\\n", + "0 2010.0 \n", + "1 2004.0 \n", + "2 2015.0 \n", + "3 2014.0 \n", + "4 2010.0 \n", + "\n", + " attributes.metadata.data-processes \\\n", + "0 [{'name': 'live update', 'type': 'data release... \n", + "1 [{'url': 'http://4dgeo.whoi.edu/sdg-bin/dv_mai... \n", + "2 [{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi... \n", + "3 [{'url': 'https://clinicalstudydatarequest.com... \n", + "4 [{'url': 'https://www.ars-grin.gov/', 'name': ... \n", + "\n", + " attributes.legacy-ids attributes.fairsharing-registry \\\n", + "0 [biodbcore-000180, bsg-d000180] Database \n", + "1 [biodbcore-001609, bsg-d001609] Database \n", + "2 [biodbcore-001140, bsg-d001140] Database \n", + "3 [biodbcore-001149, bsg-d001149] Database \n", + "4 [biodbcore-000546, bsg-d000546] Database \n", + "\n", + " attributes.record-type attributes.subjects \\\n", + "0 repository [Cell Biology, Life Science] \n", + "1 repository [Earth Science, Water Research, Oceanography] \n", + "2 repository [Bioinformatics, Biology] \n", + "3 repository [Preclinical Studies, Biomedical Science] \n", + "4 repository [Life Science] \n", + "\n", + " attributes.domains \\\n", + "0 [Cell, Microscopy, Light microscopy, Electron ... \n", + "1 [] \n", + "2 [Protein image, Microscopy, Electron microscop... \n", + "3 [] \n", + "4 [Cell, Cell culture, Germplasm] \n", + "\n", + " attributes.taxonomies attributes.user-defined-tags \\\n", + "0 [All] [] \n", + "1 [Not applicable] [subseafloor environments] \n", + "2 [All] [] \n", + "3 [Homo sapiens] [] \n", + "4 [Bacteria, Metazoa, Viridiplantae] [] \n", + "\n", + " attributes.countries \\\n", + "0 [United States] \n", + "1 [United States] \n", + "2 [Greece, Czech Republic, United Kingdom, Icela... \n", + "3 [Worldwide] \n", + "4 [United States] \n", + "\n", + " attributes.name attributes.abbreviation \\\n", + "0 FAIRsharing record for: Cell Image Library None \n", + "1 FAIRsharing record for: WHOI Ship Data-Grabber... None \n", + "2 FAIRsharing record for: Electron Microscope Pu... EMPIAR \n", + "3 FAIRsharing record for: ClinicalStudyDataReque... CSDR \n", + "4 FAIRsharing record for: Germplasm Resources In... GRIN \n", + "\n", + " attributes.url \\\n", + "0 https://fairsharing.org/10.25504/FAIRsharing.8... \n", + "1 https://fairsharing.org/fairsharing_records/3101 \n", + "2 https://fairsharing.org/fairsharing_records/2649 \n", + "3 https://fairsharing.org/10.25504/FAIRsharing.t... \n", + "4 https://fairsharing.org/10.25504/FAIRsharing.3... \n", + "\n", + " attributes.doi \\\n", + "0 10.25504/FAIRsharing.8t18te \n", + "1 None \n", + "2 None \n", + "3 10.25504/FAIRsharing.tnByoG \n", + "4 10.25504/FAIRsharing.3axym7 \n", + "\n", + " attributes.fairsharing-licence \\\n", + "0 https://creativecommons.org/licenses/by-sa/4.0... \n", + "1 https://creativecommons.org/licenses/by-sa/4.0... \n", + "2 https://creativecommons.org/licenses/by-sa/4.0... \n", + "3 https://creativecommons.org/licenses/by-sa/4.0... \n", + "4 https://creativecommons.org/licenses/by-sa/4.0... \n", + "\n", + " attributes.description \\\n", + "0 This FAIRsharing record describes: This librar... \n", + "1 This FAIRsharing record describes: The WHOI Sh... \n", + "2 This FAIRsharing record describes: EMPIAR, the... \n", + "3 This FAIRsharing record describes: ClinicalStu... \n", + "4 This FAIRsharing record describes: GRIN provid... \n", + "\n", + " attributes.publications \\\n", + "0 [{'id': 232, 'pubmed_id': 23203874, 'title': '... \n", + "1 [] \n", + "2 [{'id': 2232, 'pubmed_id': 27067018, 'title': ... \n", + "3 [] \n", + "4 [] \n", + "\n", + " attributes.licence-links \\\n", + "0 [{'licence-name': 'Cell Image Library Data Pol... \n", + "1 [{'licence-name': 'NDSF Data Archive Policy', ... \n", + "2 [{'licence-name': 'EMBL-EBI Terms of Use', 'li... \n", + "3 [{'licence-name': 'CSDR Data Sharing Agreement... \n", + "4 [] \n", + "\n", + " attributes.metadata.citations \\\n", + "0 NaN \n", + "1 NaN \n", + "2 [{'doi': '10.1038/nmeth.3806', 'pubmed-id': 27... \n", + "3 NaN \n", + "4 NaN \n", + "\n", + " attributes.metadata.abbreviation \\\n", + "0 NaN \n", + "1 NaN \n", + "2 EMPIAR \n", + "3 CSDR \n", + "4 GRIN \n", + "\n", + " attributes.metadata.access-points \\\n", + "0 NaN \n", + "1 NaN \n", + "2 [{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi... \n", + "3 NaN \n", + "4 NaN \n", + "\n", + " attributes.metadata.associated-tools \\\n", + "0 NaN \n", + "1 NaN \n", + "2 [{'url': 'https://www.ebi.ac.uk/pdbe/emdb/empi... \n", + "3 NaN \n", + "4 NaN \n", + "\n", + " attributes.metadata.deprecation-date attributes.metadata.deprecation-reason \\\n", + "0 NaN NaN \n", + "1 NaN NaN \n", + "2 NaN NaN \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " attributes.metadata.tombstone \n", + "0 NaN \n", + "1 NaN \n", + "2 NaN \n", + "3 NaN \n", + "4 NaN " + ] + }, + "execution_count": 57, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "with open('../data/raw/fairsharing_dump_api_09_2021.json') as f:\n", + " lines = f.read().splitlines()\n", + " \n", + "fairsharing_df = pd.DataFrame(lines)\n", + "fairsharing_df.columns = ['json_element']\n", + "fairsharing_df['json_element'].apply(json.loads)\n", + "fairsharing_df = pd.json_normalize(fairsharing_df['json_element'].apply(json.loads))\n", + "\n", + "fairsharing_df.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 58, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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" ] }, - "execution_count": 39, "metadata": {}, - "output_type": "execute_result" + "output_type": "display_data" } ], "source": [ - "roar_df[roar_df.subjects == 'HD28']" + "data = roar_subjects.groupby('subjects')[['eprintid']].count().sort_values('eprintid', ascending=False)\n", + "plot = [\n", + " go.Bar(\n", + " x=data.index,\n", + " y=data['eprintid'],\n", + " ) \n", + "] \n", + "\n", + "layout = go.Layout(\n", + " title='Subject coverage OpenDOAR',\n", + " xaxis=dict(tickangle=45, tickfont=dict(size=12))\n", + ")\n", + "\n", + "fig = go.Figure(plot, layout).show()" ] }, { @@ -3889,16 +9036,16 @@ }, { "cell_type": "code", - "execution_count": 19, + "execution_count": 59, "metadata": {}, "outputs": [], "source": [ - "fairsharing_subjects = fairsharing_df.explode('subjects')" + "fairsharing_subjects = fairsharing_df.explode('attributes.subjects')" ] }, { "cell_type": "code", - "execution_count": 20, + "execution_count": 61, "metadata": {}, "outputs": [ { @@ -3913,858 +9060,436 @@ 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Genetics", - "Cheminformatics,Life Science,Pharmacogenomics,Pharmacology", - "Atmospheric Science,Ecosystem Science,Environmental Science", - "Atmospheric Science,Earth Science,Environmental Science,Remote Sensing", - "Atmospheric Science,Earth Science,Environmental Science,Water Research", - "Atmospheric Science,Earth Science,Geochemistry", - "Atmospheric Science,Earth Science,Geochemistry,Geophysics", - "Atmospheric Science,Earth Science,Geodesy,Geography,Hydrogeology,Meteorology", - "Atmospheric Science,Earth Science,Geodesy,Geophysics", - "Atmospheric Science,Earth Science,Geodesy,Geophysics,Meteorology", - "Atmospheric Science,Earth Science,Geodesy,Marine Biology,Oceanography", - "Atmospheric Science,Earth Science,Geography,Hydrogeology,Hydrology,Meteorology,Water Management", - "Atmospheric Science,Earth Science,Geography,Meteorology,Oceanography", - "Atmospheric Science,Earth Science,Geology,Geophysics,Hydrology,Oceanography", - "Atmospheric Science,Earth Science,Geology,Natural Science,Oceanography", - "Atmospheric Science,Earth Science,Geology,Oceanography,Paleontology", - "Atmospheric Science,Earth Science,Geology,Oceanography,Physical Geography", - "Atmospheric Science,Earth Science,Geophysics", - "Atmospheric Science,Earth Science,Geophysics,Hydrology,Meteorology,Oceanography,Water Research", - "Atmospheric Science,Earth Science,Health Science", - "Atmospheric Science,Earth Science,Hydrogeology,Oceanography", - "Atmospheric Science,Earth Science,Meteorology,Oceanography", - "Atmospheric Science,Earth Science,Meteorology,Oceanography,Remote Sensing,Social Science", - "Atmospheric Science,Earth Science,Meteorology,Soil Science", - "Atmospheric Science,Earth Science,Environmental Science,Meteorology,Oceanography", - "Atmospheric Science,Earth Science,Environmental Science,Hydrology,Oceanography", - "Atmospheric Science,Earth Science,Environmental Science,Hydrology", - "Astrophysics and Astronomy,Geochemistry", - "Astrophysics and Astronomy,Biology,Demographics,Ecosystem Science,Humanities and Social Sciences,Marine Biology,Materials Science,Tropical Medicine,Urban Planning", - "Astrophysics and Astronomy,Biomedical Science,Chemistry,Humanities,Life Science,Medicine,Natural Science,Physics,Social Science,Social and Behavioural Science", - "Astrophysics and Astronomy,Cartography,Earth Science,Geodesy", - "Astrophysics and Astronomy,Chemistry,Nanotechnology,Pharmacology", - "Astrophysics and Astronomy,Computer Science,Culture,Data Submission, Annotation and Curation,Earth Science,Engineering Science,Environmental Science,Health Science,Life Science,Physics,Social Science", - "Astrophysics and Astronomy,Data Management,Earth Science,Humanities and Social Sciences,Life Science", - "Astrophysics and Astronomy,Earth Science", - "Astrophysics and Astronomy,Earth Science,Geodesy", - "Astrophysics and Astronomy,Earth Science,Natural Science,Physics", - "Astrophysics and Astronomy,Natural Science,Physics", - "Atmospheric Science,Earth Science,Environmental Science,Hydrogeology,Oceanography", - "Atmospheric Science,Biochemistry,Biodiversity,Biology,Ecology,Genomics,Geography,Life Science,Limnology,Microbiology,Oceanography,Proteomics", - "Atmospheric Science,Biodiversity,Earth Science,Environmental Science,Geology,Geophysics,Oceanography,Remote Sensing", - "Atmospheric Science,Biology,Earth Science,Environmental Science,Geology,Geophysics,Life Science,Natural Science,Oceanography", - "Atmospheric Science,Biology,Earth Science,Geophysics,Oceanography,Physics", - "Atmospheric Science,Chemistry,Earth Science", - "Atmospheric Science,Data Management,Engineering Science,Humanities and Social Sciences,Natural Science", - "Atmospheric Science,Earth Science,Ecology,Geography,Geology,Geophysics,Hydrology,Water Research", - "Atmospheric Science,Earth Science,Environmental Science,Geology,Oceanography", - "Atmospheric Science,Earth Science,Environmental Science,Health Science,Meteorology", - "Atmospheric Science,Earth Science,Remote Sensing", - "Atmospheric Science,Ecosystem Science,Environmental Science,Forest Management", - "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Environmental Science,Geology", - "Atmospheric Science,Energy Engineering", - "Biodiversity,Bioinformatics,Life Science", - "Biodiversity,Biology,Earth Science,Environmental Science,Forest Management,Landscape Planning,Plant Genetics,Population Dynamics", - "Biodiversity,Biology,Ecology,Taxonomy", - "Biodiversity,Biomedical Science,Data Submission, Annotation and Curation,Environmental Science,Life Science,Phylogenomics,Phylogeny,Taxonomy", - "Biodiversity,Botany,Cartography,Earth Science,Ecology,Environmental Science,Geoinformatics,Life Science,Zoology", - "Biodiversity,Botany,Earth Science,Ecology,Forest Management,Life Science,Meteorology,Plant Ecology,Soil Science,Water Management", - "Biodiversity,Botany,Ecology,Ecosystem Science,Forest Management,Plant Breeding", - "Biodiversity,Botany,Ecology,Soil Science,Zoology", - "Biodiversity,Botany,Life Science,Natural History,Paleontology", - "Biodiversity,Botany,Natural History,Paleontology,Zoology", - "Biodiversity,Chemistry,Earth Science,Environmental Science,Geography,Geophysics,Marine Biology,Oceanography,Taxonomy", - "Biodiversity,Earth Science,Ecology,Economics,Ecosystem Science,Environmental Science,Marine Biology,Oceanography,Zoology", - "Biodiversity,Earth Science,Economics,Meteorology,Water Management", - "Biodiversity,Earth Science,Ecosystem Science,Life Science,Marine Biology,Oceanography", - "Biodiversity,Earth Science,Environmental Science,Geography,Geophysics,Marine Biology,Oceanography,Physical Geography", - "Biodiversity,Earth Science,Environmental Science,Geography,Marine Biology,Oceanography", - "Biodiversity,Earth Science,Environmental Science,Geography,Marine Biology,Oceanography,Taxonomy", - "Biodiversity,Earth Science,Environmental Science,Marine Biology,Oceanography", - "Biodiversity,Earth Science,Environmental Science,Marine Biology,Oceanography,Taxonomy", - "Biodiversity,Ecology", - "Biodiversity,Ecology,Ecosystem Science,Environmental Science", + "Oceanography", + "Epidemiology", + "Biology", "Biodiversity", - "Biochemistry,Life Science,Proteomics", - "Biochemistry,Life Science,Metabolomics,Molecular biology", - "Biochemistry,Bioinformatics,Cheminformatics,Computational Biology,Life Science", - "Atmospheric Science,Environmental Science,Geology,Marine Biology,Oceanography", - "Atmospheric Science,Geology,Marine Biology,Meteorology,Remote Sensing", - "Atmospheric Science,Geophysics,Hydrology,Meteorology,Soil Science", - "Atmospheric Science,Meteorology", - "Atomic, Molecular, Optical and Plasma Physics,Materials Science,Medical Physics,Physical Chemistry", + "Atmospheric Science", + "Genetics", + "Health Science", + "Virology", + "Proteomics", + "Bioinformatics", + "Agriculture", + "Geology", + "Transcriptomics", + "Clinical Studies", + "Humanities and Social Sciences", + "Preclinical Studies", + "Chemistry", + "Comparative Genomics", + "Botany", + "Data Management", + "Medicine", + "Natural Science", + "Functional Genomics", + "Meteorology", + "Geophysics", + "Systems Biology", + "Social Science", + "Ecology", + "Engineering Science", + "Geography", + "Data Submission, Annotation and Curation", + "Metabolomics", + "Marine Biology", + "Economics", + "Physics", "Biochemistry", - "Biochemistry,Biodiversity,Bioinformatics,Biology,Earth Science,Ecology,Environmental Science,Evolutionary Biology,Geochemistry,Geography,Geology,Geophysics,Life Science,Marine Biology,Microbial Ecology,Oceanography,Population Dynamics,Population Genetics", - "Biochemistry,Bioinformatics,Biology,Biomaterials,Biophysics,Computational Biology,Structural Biology", - "Biochemistry,Bioinformatics,Chemical Biology,Cheminformatics,Life Science,Proteomics,Systems Biology", - "Biochemistry,Biology,Enzymology", - "Biochemistry,Genetics,Life Science", - "Biochemistry,Biomedical Science,Life Science", - "Biochemistry,Biomedical Science,Life Science,Preclinical Studies,Systems Biology", - "Biochemistry,Cheminformatics,Chemistry,Computational Chemistry,Molecular Chemistry,Molecular Dynamics,Molecular Physical Chemistry,Molecular biology", - "Biochemistry,Cheminformatics,Systems Biology", - "Biochemistry,Chemistry,Organic Chemistry,Organic Molecular Chemistry", - "Biochemistry,Data Integration,Genomics,Metabolomics,Molecular biology,Omics,Systems Biology", - "Biochemistry,Data Integration,Life Science", - "Biochemistry,Data Submission, Annotation and Curation,Life Science", - "Biochemistry,Drug Discovery,Genomics,Medicinal Chemistry", - "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Geophysics", - "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Energy Engineering,Geodesy,Geophysics,Oceanography,Remote Sensing,Water Research", - "Cheminformatics,Life Science", - "Agriculture,Genomics,Life Science", - "Agriculture,Botany,Forest Management", - "Agriculture,Botany,Genomics,Life Science,Plant Breeding", - "Agriculture,Botany,Genomics,Life Science,Plant Breeding,Plant Genetics", - "Agriculture,Botany,Genomics,Plant Genetics", - "Agriculture,Botany,Life Science", - "Agriculture,Botany,Life Science,Plant Genetics", - "Agriculture,Comparative Genomics,Genomics", - "Agriculture,Comparative Genomics,Life Science,Plant Breeding", - "Agriculture,Computer Science,Earth Science,Engineering Science,Humanities,Humanities and Social Sciences,Life Science,Medicine,Natural Science,Social Science", - "Agriculture,Criminology,Demographics,Developmental Biology,Energy Engineering,Environmental Science,Global Health,Health Science,Public Finance", - "Agriculture,Demographics,Earth Science,Ecology,Energy Engineering,Environmental Science,Global Health,Public Health,Public Law,Water Management", - "Agriculture,Demographics,Earth Science,Economics,Energy Engineering,Global Health,Public Health,Social Science", - "Agriculture,Earth Science,Ecology,Environmental Science,Hydrology", - "Agriculture,Earth Science,Energy Engineering,Geriatric Medicine,Health Science,Maritime Engineering,Oceanography", - "Agriculture,Earth Science,Engineering Science,Environmental Science,Health Science,Humanities and Social Sciences,Natural Science", - "Agriculture,Earth Science,Food Security,Forest Management,Soil Science", - "Agriculture,Ecology,Population Dynamics,Remote Sensing", - "Agriculture,Environmental Science,Social Science", - "Agriculture,Food Security,Nutritional Science", - "Agriculture,Forest Management,Health Science,Health Services Research,Meteorology", - "Agriculture,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics", - "Agriculture,Botany,Comparative Genomics,Genomics", - "Agriculture,Biotechnology,Life Science,Nutritional Science", - "Agriculture,Biomedical Science,Earth Science,Environmental Science,Humanities,Life Science,Natural Science", - "Agriculture,Animal Genetics,Animal Husbandry,Animal Physiology,Aquaculture,Biology,Biomedical Science,Botany,Economics,Food Security,Genomics,Horticulture,Life Science,Nutritional Science,Plant Genetics,Soil Science,Veterinary Medicine", - "Aerospace Engineering,Astrophysics and Astronomy", - "Aerospace Engineering,Biology,Chemical Engineering,Data Management,Earth Science,Life Science,Mechanics", - "Agricultural Economics,Agriculture,Business Administration,Earth Science", - "Agricultural Economics,Economic Theory,Economic and Social History,Social Policy", - "Agricultural Engineering,Agricultural Law,Agriculture,Animal Husbandry,Aquaculture,Biodiversity,Botany,Ecology,Entomology,Farming Systems Research,Fisheries Science,Food Security,Health Science,Nutritional Science,Pathology,Physics,Plant Anatomy,Plant Breeding,Plant Cell Biology,Rural and Agricultural Sociology", - "Agricultural Engineering,Agriculture,Agroecology,Agronomy,Animal Husbandry,Biology,Botany,Data Management,Data Visualization,Economics,Engineering Science,Entomology,Environmental Science,Farming Systems Research,Genomics,Health Science,Hydrology,Jurisprudence,Life Science,Nutritional Science,Pathology,Physics,Rural and Agricultural Sociology,Soil Science", - "Agriculture,Agroecology,Biodiversity,Biology,Botany,Ecosystem Science,Life Science,Taxonomy", - "Agriculture,Agronomy,Biotechnology", - "Agriculture,Animal Breeding,Animal Husbandry,Environmental Science,Food Security,Forest Management", - "Agriculture,Animal Husbandry,Biodiversity,Earth Science,Economics,Energy Engineering,Environmental Science,Forest Management,Health Science,Water Research", - "Agriculture,Biology,Life Science", - "Agriculture,Art,Biodiversity,Biology,Chemistry,Ecology,Engineering Science,Environmental Science,Humanities,Humanities and Social Sciences,Life Science,Physics,Social Science,Veterinary Medicine", - "Agriculture,Art,Biotechnology,Culture,Demographics,Economics,Energy Engineering,Forest Management,Global Health,Humanities and Social Sciences,Life Science,Telecommunication Engineering,Urban Planning,Water Management", - "Agriculture,Art,Communication Science,Culture,Economics,Education Science,Environmental Science,Forest Management,Health Science,Humanities and Social Sciences,Industrial Engineering,Public Finance,Water Management", - "Agriculture,Atmospheric Science,Biodiversity,Biology,Chemistry,Earth Science,Ecology,Environmental Science,Fisheries Science,Freshwater Science,Geophysics,Life Science,Oceanography,Paleontology", - "Agriculture,Atmospheric Science,Biology,Botany,Chemistry,Earth Science,Environmental Science,Geochemistry,Geography,Humanities,Humanities and Social Sciences,Hydrogeology,Life Science,Mineralogy,Natural Science,Oceanography,Physics,Soil Science,Zoology", - "Agriculture,Atmospheric Science,Biology,Botany,Earth Science,Ecology,Ecosystem Science,Environmental Science,Geophysics,Life Science,Microbial Ecology,Microbiology,Natural Science,Oceanography,Plant Ecology,Zoology", - "Agriculture,Biodiversity,Biotechnology,Life Science,Nutritional Science,Phylogenetics", - "Agriculture,Biodiversity,Food Security", - "Agriculture,Biology,Genetics,Genomics,Life Science,Plant Genetics", - "Agriculture,Genetics,Genomics,Life Science,Transcriptomics", - "Agriculture,Genomics,Life Science,Plant Breeding,Plant Genetics", - "Astrophysics and Astronomy,Atmospheric Science,Earth Science", - "Agriculture,Knowledge and Information Systems,Life Science", - "Ancient Cultures,Cartography,Earth Science,Geoinformatics,Humanities", - "Animal Genetics", - "Animal Genetics,Bioinformatics,Biology,Cell Biology,Cheminformatics,Database Management,Drug Metabolism,Endocrinology,Genetics,Human Genetics,Medical Informatics,Metabolomics,Microbiology,Molecular Microbiology,Molecular biology,Plant Genetics,Proteomics,Systems Biology,Transcriptomics", - "Animal Genetics,Genetics,Genomics,Life Science", - "Animal Genetics,Genetics,Life Science", - "Animal Genetics,Genetics,Life Science,Systems Biology", - "Animal Genetics,Life Science", - "Animal Genetics,Pathology", - "Anthropology,Classical Archaeology,Data Integration,Data Management", - "Anthropology,Criminology,Data Governance,Data Management,Data Submission, Annotation and Curation,Demographics,Economics,Political Science,Psychology,Public Health,Social Science,Social and Behavioural Science", - "Anthropology,Cultural Studies,Culture,Historical Linguistics,Human Geography,Linguistics", - "Anthropology,Fine Arts,Geography,History,Humanities and Social Sciences,Life Science,Literary Studies,Political Science,Psychology,Social Science", - "Applied Linguistics,Classical Philology,Historical Linguistics,Linguistics", - "Applied Mathematics,Biology,Biotechnology,Communication Science,Computer Science,Data Management,Earth Science,Economics,Education Science,Environmental Science,Humanities and Social Sciences,Materials Science,Medicine,Physics,Psychology,Statistics,Surgery", - "Applied Microbiology,Data Integration,Data Management,Data Quality,Data Submission, Annotation and Curation,Microbial Ecology,Microbial Physiology,Proteomics,Transcriptomics", - "Aquaculture,Earth Science,Geography,Maritime Engineering", - "Architecture,Bioengineering,Civil Engineering,Computer Science,Earth Science,Economics,Environmental Science,Health Science,Humanities and Social Sciences,Life Science,Mathematics,Physics,Political Science", - "Architecture,Building Engineering Physics,Chemistry,Construction Engineering,Earth Science,Economics,Energy Engineering,Engineering Science,Environmental Science,Geography,Physics,Power Engineering", - "Art,Art History,Culture,Economics,Fine Arts,Humanities,Social Science", - "Artificial Intelligence,Biomedical Science,Digital Image Processing,Oncology,Radiology", - "Astrophysics and Astronomy,Atmospheric Science,Chemistry", - "Ancient Cultures,Architecture,Art History,Astrophysics and Astronomy,Chemistry,Classical Archaeology,Earth Science,History of Science,Humanities,Linguistics,Philosophy,Prehistory,Religious Studies", - "Anatomy,Endocrinology,Genetics,Life Science", - "Anatomy,Developmental Biology,Embryology,Life Science", - "Analytical Chemistry,Biology,Chemistry,Engineering Science,Life Science,Physics,Synthetic Chemistry", - "Agriculture,Life Science,Ontology and Terminology", - "Agriculture,Plant Breeding,Plant Cultivation", - "Agriculture,Soil Science", - "Agriculture,Soil Science,Urban Planning", - "Agroecology,Biodiversity,Ecology,Genomics,Metagenomics,Microbial Ecology,Phylogenomics", - "Agronomy,Bioinformatics,Botany,Genetics,Genomics,Life Science", - "Agronomy,Botany,Genetics,Life Science,Plant Genetics", - "Analytical Chemistry", - "Analytical Chemistry,Biology,Chemistry,Composite Materials,Materials Engineering,Materials Informatics,Nanotechnology,Occupational Medicine,Safety Science,Toxicogenomics,Toxicology", - "Analytical Chemistry,Biomimetic Chemistry,Chemistry,Inorganic Molecular Chemistry,Medicinal Chemistry,Molecular Chemistry,Organic Chemistry,Synthesis Chemistry,Synthetic Chemistry,Technical Chemistry", - "Anatomy,Comparative Genomics,Life Science", - "Analytical Chemistry,Drug Metabolism,Environmental Science,Metabolomics", + "Ontology and Terminology", + "Hydrology", + "Astrophysics and Astronomy", + "Molecular biology", + "Infectious Disease Medicine", + "Medical Virology", + "Computational Biology", + "Neurobiology", + "Phylogenetics", + "Structural Biology", + "Humanities", + "Developmental Biology", + "Computer Science", + "Immunology", + "Geochemistry", "Anatomy", - "Anatomy,Behavioural Biology,Biodiversity,Biology,Evolutionary Biology,Paleontology,Phylogenetics,Phylogeny", - "Anatomy,Bioinformatics,Comparative Genomics,Data Submission, Annotation and Curation,Functional Genomics,Genetics,Genomics,Life Science,Molecular Genetics,Molecular biology", - "Anatomy,Biomedical Science,Comparative Genomics,Environmental Science,Systems Biology,Toxicogenomics,Toxicology", - "Anatomy,Biomedical Science,Life Science", - "Anatomy,Cell Biology,Developmental Biology,Functional Genomics,Genetics,Genomics,Proteomics", - "Anatomy,Comparative Genomics,Developmental Biology,Embryology,Epigenomics,Functional Genomics,Genomics,Life Science,Ontology and Terminology,Phylogenomics,Transcriptomics", - "Anatomy,Comparative Genomics,Functional Genomics,Life Science", - "Biodiversity,Ecology,Evolutionary Biology,Genetics,Oceanography", - "Biodiversity,Environmental Science", - "Biodiversity,Environmental Science,Marine Biology", - "Biomedical Science,Life Science,Transcriptomics", - "Biomedical Science,Genomics,Life Science,Proteomics,Transcriptomics", - "Biomedical Science,Genomics,Medicine,Phenomics", - "Biomedical Science,Genomics,Preclinical Studies", - "Biomedical Science,Genomics,Preclinical Studies,Proteomics", - "Biomedical Science,Genomics,Structural Biology,Structural Genomics", - "Biomedical Science,Glycomics,Health Science", - "Biomedical Science,Glycomics,Life Science", - "Biomedical Science,Health Science,Humanities,Life Science,Social Science,Social and Behavioural Science", - "Biomedical Science,Health Science,Life Science,Medicine", - "Biomedical Science,Health Science,Medicine,Preclinical Studies", - "Biomedical Science,Health Science,Oncology", - "Biomedical Science,Human Genetics,Medicine,Ophthalmology,Preclinical Studies", - "Biomedical Science,Immunology", - "Biomedical Science,Immunology,Life Science", - "Biomedical Science,Immunology,Life Science,Preclinical Studies", - "Biomedical Science,Life Science,Mathematics,Physiology,Systems Biology", - "Biomedical Science,Life Science,Neurobiology,Neuroscience", - "Biomedical Science,Life Science,Oncology", - "Biomedical Science,Life Science,Population Genetics", - "Biomedical Science,Life Science,Preclinical Studies", - "Biomedical Science,Life Science,Preclinical Studies,Proteomics", - "Biomedical Science,Genomics,Life Science,Proteomics", - "Biomedical Science,Genomics,Geriatric Medicine", - "Biomedical Science,Genetics,Preclinical Studies,Proteomics", - "Biomedical Science,Epidemiology,Life Science,Molecular biology", - "Biomedical Science,Ecology,Epidemiology,Life Science,Preclinical Studies", - "Biomedical Science,Endocrinology,Life Science,Systems Biology", - "Biomedical Science,Epidemiology,Genomics", - "Biomedical Science,Epidemiology,Genomics,Life Science,Proteomics,Virology", - "Biomedical Science,Epidemiology,Genomics,Medicine,Preclinical Studies", - "Biomedical Science,Epidemiology,Genomics,Proteomics,Virology", - "Biomedical Science,Epidemiology,Global Health,Health Science,Medicine", - "Biomedical Science,Epidemiology,Health Science,Virology", - "Biomedical Science,Epidemiology,Life Science", - "Biomedical Science,Epidemiology,Life Science,Virology", - "Biomedical Science,Genetics,Life Science,Oncology,Preclinical Studies", - "Biomedical Science,Epidemiology,Preclinical Studies", - "Biomedical Science,Epidemiology,Translational Medicine,Virology", - "Biomedical Science,Epigenetics,Functional Genomics,Life Science", - "Biomedical Science,Epigenetics,Genetics", - "Biomedical Science,Epigenetics,Life Science", - "Biomedical Science,Epigenetics,Life Science,Population Genetics,Transcriptomics", - "Biomedical Science,Evolutionary Biology", - "Biomedical Science,Functional Genomics,Genomics,Life Science", - "Biomedical Science,Genetics,Life Science,Medicine", - "Biomedical Science,Life Science,Systems Biology", - "Biomedical Science,Medical Informatics,Medicine", - "Biodiversity,Environmental Science,Marine Biology,Oceanography", - "Biomedical Science,Medicine", - "Botany,Genetics,Life Science", - "Botany,Life Science,Ontology and Terminology,Plant Anatomy", - "Botany,Life Science,Plant Anatomy", - "Botany,Life Science,Plant Breeding,Population Genetics", - "Botany,Life Science,Plant Genetics", - "Botany,Paleontology,Plant Anatomy", - "Botany,Plant Genetics", - "Botany,Plant Genetics,Transcriptomics", - "Botany,Taxonomy", - "Business Administration,Chemistry,Clinical Psychology,Computer Science,Education Science,Engineering Science,Geography,History,Life Science,Medicine,Physics,Policy,Psychology,Research on Teaching, Learning and Training", - "Cardiology,Clinical Studies,Community Care,Epidemiology,Genomics,Global Health,Health Science,Health Services Research,Medical Virology,Occupational Medicine,Primary Health Care,Public Health,Reproductive Health,Respiratory Medicine,Virology", - "Cardiology,Clinical Studies,Critical Care Medicine,Health Science,Infectious Disease Medicine,Medical Virology,Medicine,Respiratory Medicine", - "Cardiology,Clinical Studies,Health Science,Infectious Disease Medicine,Medical Virology,Medicine", - "Cardiology,Genetics", - "Cartography,Earth Science,Environmental Science,Photogrammetry,Physical Geography,Remote Sensing", - "Cartography,Earth Science,Geography,Remote Sensing", - "Cell Biology,Developmental Biology,Molecular Dynamics", - "Cell Biology,Life Science", - "Cell Biology,Life Science,Transcriptomics", - "Cellular Neuroscience,Comparative Neurobiology,Molecular Neuroscience,Neurobiology,Neurophysiology", - "Chemical Engineering,Chemistry,Thermodynamics", - "Botany,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics", - "Aerospace Engineering,Agricultural Engineering,Agriculture,Architecture,Atmospheric Science,Bioengineering,Biological Process Engineering,Biology,Building Design,Building Engineering Physics,Business Administration,Chemical Engineering,Chemistry,Civil Engineering,Component Engineering,Computer Science,Construction Engineering,Earth Science,Electrical Engineering,Energy Engineering,Engineering Science,Environmental Science,Food Process Engineering,Geography,Health Science,Human-Machine Systems Engineering,Hydraulic Engineering,Hydrology,Industrial Engineering,Informatics,Life Science,Logistics Engineering,Maritime Engineering,Materials Engineering,Mathematics,Mechanical Engineering,Mechanical Process Engineering,Metal-Cutting Manufacturing Engineering,Nanotechnology,Physics,Plastics Engineering,Power Engineering,Process Engineering,Water Research", - "Botany,Entomology,Geochemistry,Life Science,Natural History,Paleontology,Zoology", - "Biomedical Science,Oncology", - "Biomedical Science,Medicine,Neurobiology,Translational Medicine", - "Biomedical Science,Medicine,Preclinical Studies", - "Biomedical Science,Medicine,Translational Medicine", - "Biomedical Science,Molecular biology", - "Biomedical Science,Nanotechnology", - "Biomedical Science,Neurobiology,Neurophysiology", - "Biomedical Science,Neurobiology,Neuroscience", - "Biomedical Science,Neurobiology,Preclinical Studies", - "Biomedical Science,Neuroscience", - "Biomedical Science,Pathology,Toxicogenomics", - "Botany,Data Visualization,Genomics,Life Science", - "Biomedical Science,Physiology", - "Biomedical Science,Physiology,Preclinical Studies", - "Biomedical Science,Preclinical Studies,Psychology,Social and Behavioural Science", - "Biomedical Science,Proteomics", - "Biomedical Science,Public Health,Social Science,Social and Behavioural Science", - "Biomedical Science,Social Science", - "Biomedical Science,Translational Medicine", - "Biotherapeutics,Structural Biology", - "Botany,Data Management", - "Biomedical Science,Earth Science,Environmental Science,Life Science,Traditional Medicine", - "Biomedical Science,Earth Science,Environmental Science,Epidemiology,Life Science,Virology", - "Biomedical Science,Drug Repositioning,Epidemiology,Life Science,Virology", - "Biomedical Science,Drug Metabolism,Medical Informatics,Medicine", - "Bioinformatics,Data Management,Data Submission, Annotation and Curation,Epidemiology,Functional Genomics,Genomics,Metagenomics,Transcriptomics,Virology", - "Bioinformatics,Data Management,Epidemiology,Functional Genomics,Genomics,Life Science,Metagenomics,Virology", - "Bioinformatics,Data Submission, Annotation and Curation,Epigenomics,Genetics,Genomics,Knowledge and Information Systems,Life 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"Bioinformatics,Computational Biology,Life Science,Metabolomics,Proteomics,Transcriptomics", - "Bioinformatics,Computational Biology,Genomics", - "Bioengineering,Biomedical Science,Computational Biology,Computer Science,Neurobiology,Neuroscience", - "Biodiversity,Freshwater Science,Life Science", - "Biodiversity,Life Science,Microbiology", - "Biodiversity,Life Science,Natural History", - "Biodiversity,Life Science,Oceanography", - "Biodiversity,Life Science,Phylogeny", - "Biodiversity,Life Science,Tropical Medicine", - "Biodiversity,Natural History", - "Biodiversity,Population Genetics", - "Biodiversity,Taxonomy", - "Bioengineering,Genetics", - "Bioinformatics,Comparative Genomics,Oncology,Translational Medicine", - "Bioengineering,Synthetic Biology", - "Bioinformatics,Biological Psychology,Computational Neuroscience,Epigenomics,Life Science,Neuroscience", - "Bioinformatics,Biology,Data Integration,Data Submission, Annotation and Curation,Genetics,Life Science,Molecular Genetics", - 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