From be70e8cc74f8fcbb60e0804ab0d416b4eddc0361 Mon Sep 17 00:00:00 2001 From: Andrea Mannocci Date: Fri, 23 Jul 2021 12:38:56 +0200 Subject: [PATCH 1/2] added first dedup results --- data/interim/ds_dedup03.csv | 8744 ++++++++++++++++++++++ data/interim/ds_dedup05.csv | 8325 ++++++++++++++++++++ data/interim/ds_dedup07.csv | 7284 ++++++++++++++++++ data/interim/ds_dedup09.csv | 5250 +++++++++++++ notebooks/01.1-exploration-re3data.ipynb | 1922 ++--- notebooks/01.3-exploration-roar.ipynb | 6095 ++++++++++++--- 6 files changed, 35531 insertions(+), 2089 deletions(-) create mode 100644 data/interim/ds_dedup03.csv create mode 100644 data/interim/ds_dedup05.csv create mode 100644 data/interim/ds_dedup07.csv create mode 100644 data/interim/ds_dedup09.csv diff --git a/data/interim/ds_dedup03.csv b/data/interim/ds_dedup03.csv new file mode 100644 index 0000000..4cc0515 --- /dev/null +++ b/data/interim/ds_dedup03.csv @@ -0,0 +1,8744 @@ +dedup_id;duplicate_id;original_id;name;source +dedup::252773ebafcbbac75238b419d964068e;https://fairsharing.org/bsg-d001520;https://fairsharing.org/bsg-d001520;ACTRIS Data Centre;FAIRsharing +dedup::29a83a8a9641bb860a679d7e5ba52d26;14174;14174;OHIO Open Library | Ohio University Research;roar +dedup::bdba33c9c0089cabdd362693a28afd33;11829;11829;Intézményi publikációk repozitóriuma;roar +dedup::5db60c98209913790e4fcce4597ee37c;opendoar____::7de6cd35982b5384abd11277d1c25f4f;9413;data.gov.uk;OpenDOAR +dedup::1aa7a8773e6a7fdacbcedf9999009a38;opendoar____::191f8f858acda435ae0daf994e2a72c2;8648;digital commons@georgia southern;OpenDOAR +dedup::4801441f041958afaca324c43c40787b;10453;10453;MCStor;roar +dedup::e37b08dd3015330dcbb5d6663667b8b8;opendoar____::18997733ec258a9fcaf239cc55d53363;427;digital repository at the university of maryland;OpenDOAR +dedup::2841194266115ac1cc04d19630cde46b;re3data_____::3afbb2b45a3dd218a5a091ca773cf6c5;r3d100011189;PRISM: University of Calgary's Digital Repository;re3data +dedup::55b1927fdafef39c48e5b73b5d61ea60;opendoar____::0c9ebb2ded806d7ffda75cd0b95eb70c;1505;sapientia;OpenDOAR +dedup::17be105a567329efecd4fc3c3606a6b6;https://fairsharing.org/10.25504/FAIRsharing.zcveaz;https://fairsharing.org/10.25504/FAIRsharing.zcveaz;4TU.ResearchData;FAIRsharing +dedup::860320be12a1c050cd7731794e231bd3;opendoar____::2290a7385ed77cc5592dc2153229f082;1064;oxford university research archive;OpenDOAR +dedup::525a7257779ebe4303274e45e3a6ef7b;https://fairsharing.org/bsg-d001726;https://fairsharing.org/bsg-d001726;GEOFON;FAIRsharing +dedup::b99e288da490b7b5795c749505ba34e0;opendoar____::70efdf2ec9b086079795c442636b55fb;17;unsworks;OpenDOAR +dedup::41869b81c91e34f789fb0175802326d3;opendoar____::d4b5b5c16df28e61124e13181db7774c;4991;digital commons @ du;OpenDOAR +dedup::db8419f41d890df802dca330e6284952;opendoar____::f3ac63c91272f19ce97c7397825cc15f;2313;dbs esource;OpenDOAR +dedup::a425170bf40e8d6ee473b271d96dae18;opendoar____::6c524f9d5d7027454a783c841250ba71;356;university of utah institutional repository;OpenDOAR +dedup::a655fbe4b8d7439994aa37ddad80de56;4145;4145;Bibliotecas Virtuales FHL. 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Research at York St John | Research at York St John;roar +dedup::0d2b2061826a5df3221116a5085a6052;4762;4762;FREDE G. 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b/notebooks/01.1-exploration-re3data.ipynb index b79a854..5bfe9b5 100644 --- a/notebooks/01.1-exploration-re3data.ipynb +++ b/notebooks/01.1-exploration-re3data.ipynb @@ -1,5 +1,20 @@ { "cells": [ + { + "cell_type": "markdown", + "metadata": {}, + "source": [ + "Information to check\n", + "- names\n", + "- description\n", + "- url\n", + "- subjects & keywords\n", + "- content type\n", + "- repo type\n", + "- policies\n", + "\n" + ] + }, { "cell_type": "code", "execution_count": 1, @@ -31,14 +46,459 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "## Loading datasets" + "## Loading dataset" ] }, { - "cell_type": "markdown", + "cell_type": "code", + "execution_count": 20, "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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openaire_idre3data_idrepository_nameadditional_namerepository_urlrepository_iddescriptiontypesizeupdate_datestart_dateend_datesubjectmission_statementcontent_typeprovider_typekeywordinstitutionpolicydatabase_accessdatabase_licensedata_accessdata_licensedata_uploaddata_upload_licensesoftwareversioningapipid_systemcitation_guideline_urlaid_systemenhanced_publicationquality_managementcertificatemetadata_standardsyndicationremarksentry_datelast_update
0re3data_____::91780fe96da5ba32f804e43359c154bar3d100000001Odum Institute Archive Dataverse[]https://dataverse.unc.edu/dataverse/odum[]The Odum Institute Archive Dataverse contains ...[disciplinary]13 dataverses; 3.050 datasets2020-12-04NaNNaN[1 Humanities and Social Sciences, 111 Social ...false[Databases, Plain text, Scientific and statist...[dataProvider][FAIR, Middle East, crime, demography, economy...[[Odum Institute for Research in Social Scienc...truetruetruetruetruetruefalsetrueNaNfalsetruetruetrueunknownyestruetruefalseOdum Dataverse is covered by Thomson Reuters D...2013-06-102021-07-06
1re3data_____::cc3ea05c863cd49af75f7f54e0e86f09r3d100000002Access to Archival Databases[AAD]https://aad.archives.gov/aad/[RRID:SCR_010479, RRID:nlx_157752]You will find in the Access to Archival Databa...[disciplinary]NaNNaN1985NaN[1 Humanities and Social Sciences, 102 History...true[Images, Standard office documents, Structured...[dataProvider][US History][[The U.S. National Archives and Records Admin...truetruefalsetruetruetruefalsetruenotruetruetruetrueunknownunknownfalsefalsetrueNaN2012-07-042021-05-25
2re3data_____::a2f73fbe91311f4356d0d7957c441773r3d100000004Datenbank Gesprochenes Deutsch[DGD, DGD2 (formerly), Database for Spoken Ger...https://dgd.ids-mannheim.de/[]The \"Database for Spoken German (DGD)\" is a co...[disciplinary]34 corpora2020-02-032012NaN[1 Humanities and Social Sciences, 104 Linguis...true[Audiovisual data, Standard office documents, ...[dataProvider, serviceProvider][Australian German, FOLK, German dialects, Pfe...[[Institut für Deutsche Sprache, Archiv für Ge...truetruefalsetruetruetruefalsetrueyesfalsetruetruetrueunknownunknowntruefalsefalseNaN2012-07-202020-08-27
3re3data_____::0394b97eb11f19785cbca1ec830429dar3d100000005UNC Dataverse[University of North Carolina Dataverse]https://dataverse.unc.edu/[]UNC Dataverse is an open-source repository sof...[institutional]186 dataverses; 25.272 studies; 229.442 files2020-11-302011NaN[1 Humanities and Social Sciences, 111 Social ...true[Archived data, Plain text, Raw data, Scientif...[dataProvider, serviceProvider][FAIR, census, demographic survey, demography,...[[Odum Institute for Research in Social Scienc...truetruefalsetruetruetruetruetrueyestruetruetruetrueunknownyesfalsetruefalseThe Odum Institute houses one of the oldest an...2012-07-232020-11-30
4re3data_____::a48f09c562b247a9919acfe195549b47r3d100000006Archaeology Data Service[ADS]https://archaeologydataservice.ac.uk/[FAIRsharing_doi:10.25504/FAIRsharing.hm1mfg]The ADS is an accredited digital repository fo...[disciplinary]1837 results2020-05-201996-10-01NaN[1 Humanities and Social Sciences, 101 Ancient...true[Archived data, Audiovisual data, Databases, I...[dataProvider, serviceProvider][FAIR, archaeology, cultural heritage, prehist...[[Arts and Humanities Research Council, [AHRC]...truetruetruetruetruetruetruetrueyestruetruetruetrueunknownyestruetruetrueADS is covered by Clarivate Data Citation Inde...2012-07-232021-06-11
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" + ], + "text/plain": [ + " openaire_id re3data_id \\\n", + "0 re3data_____::91780fe96da5ba32f804e43359c154ba r3d100000001 \n", + "1 re3data_____::cc3ea05c863cd49af75f7f54e0e86f09 r3d100000002 \n", + "2 re3data_____::a2f73fbe91311f4356d0d7957c441773 r3d100000004 \n", + "3 re3data_____::0394b97eb11f19785cbca1ec830429da r3d100000005 \n", + "4 re3data_____::a48f09c562b247a9919acfe195549b47 r3d100000006 \n", + "\n", + " repository_name \\\n", + "0 Odum Institute Archive Dataverse \n", + "1 Access to Archival Databases \n", + "2 Datenbank Gesprochenes Deutsch \n", + "3 UNC Dataverse \n", + "4 Archaeology Data Service \n", + "\n", + " additional_name \\\n", + "0 [] \n", + "1 [AAD] \n", + "2 [DGD, DGD2 (formerly), Database for Spoken Ger... \n", + "3 [University of North Carolina Dataverse] \n", + "4 [ADS] \n", + "\n", + " repository_url \\\n", + "0 https://dataverse.unc.edu/dataverse/odum \n", + "1 https://aad.archives.gov/aad/ \n", + "2 https://dgd.ids-mannheim.de/ \n", + "3 https://dataverse.unc.edu/ \n", + "4 https://archaeologydataservice.ac.uk/ \n", + "\n", + " repository_id \\\n", + "0 [] \n", + "1 [RRID:SCR_010479, RRID:nlx_157752] \n", + "2 [] \n", + "3 [] \n", + "4 [FAIRsharing_doi:10.25504/FAIRsharing.hm1mfg] \n", + "\n", + " description type \\\n", + "0 The Odum Institute Archive Dataverse contains ... [disciplinary] \n", + "1 You will find in the Access to Archival Databa... [disciplinary] \n", + "2 The \"Database for Spoken German (DGD)\" is a co... [disciplinary] \n", + "3 UNC Dataverse is an open-source repository sof... [institutional] \n", + "4 The ADS is an accredited digital repository fo... [disciplinary] \n", + "\n", + " size update_date start_date \\\n", + "0 13 dataverses; 3.050 datasets 2020-12-04 NaN \n", + "1 NaN NaN 1985 \n", + "2 34 corpora 2020-02-03 2012 \n", + "3 186 dataverses; 25.272 studies; 229.442 files 2020-11-30 2011 \n", + "4 1837 results 2020-05-20 1996-10-01 \n", + "\n", + " end_date subject \\\n", + "0 NaN [1 Humanities and Social Sciences, 111 Social ... \n", + "1 NaN [1 Humanities and Social Sciences, 102 History... \n", + "2 NaN [1 Humanities and Social Sciences, 104 Linguis... \n", + "3 NaN [1 Humanities and Social Sciences, 111 Social ... \n", + "4 NaN [1 Humanities and Social Sciences, 101 Ancient... \n", + "\n", + " mission_statement content_type \\\n", + "0 false [Databases, Plain text, Scientific and statist... \n", + "1 true [Images, Standard office documents, Structured... \n", + "2 true [Audiovisual data, Standard office documents, ... \n", + "3 true [Archived data, Plain text, Raw data, Scientif... \n", + "4 true [Archived data, Audiovisual data, Databases, I... \n", + "\n", + " provider_type \\\n", + "0 [dataProvider] \n", + "1 [dataProvider] \n", + "2 [dataProvider, serviceProvider] \n", + "3 [dataProvider, serviceProvider] \n", + "4 [dataProvider, serviceProvider] \n", + "\n", + " keyword \\\n", + "0 [FAIR, Middle East, crime, demography, economy... \n", + "1 [US History] \n", + "2 [Australian German, FOLK, German dialects, Pfe... \n", + "3 [FAIR, census, demographic survey, demography,... \n", + "4 [FAIR, archaeology, cultural heritage, prehist... \n", + "\n", + " institution policy database_access \\\n", + "0 [[Odum Institute for Research in Social Scienc... true true \n", + "1 [[The U.S. National Archives and Records Admin... true true \n", + "2 [[Institut für Deutsche Sprache, Archiv für Ge... true true \n", + "3 [[Odum Institute for Research in Social Scienc... true true \n", + "4 [[Arts and Humanities Research Council, [AHRC]... true true \n", + "\n", + " database_license data_access data_license data_upload data_upload_license \\\n", + "0 true true true true false \n", + "1 false true true true false \n", + "2 false true true true false \n", + "3 false true true true true \n", + "4 true true true true true \n", + "\n", + " software versioning api pid_system citation_guideline_url aid_system \\\n", + "0 true NaN false true true true \n", + "1 true no true true true true \n", + "2 true yes false true true true \n", + "3 true yes true true true true \n", + "4 true yes true true true true \n", + "\n", + " enhanced_publication quality_management certificate metadata_standard \\\n", + "0 unknown yes true true \n", + "1 unknown unknown false false \n", + "2 unknown unknown true false \n", + "3 unknown yes false true \n", + "4 unknown yes true true \n", + "\n", + " syndication remarks entry_date \\\n", + "0 false Odum Dataverse is covered by Thomson Reuters D... 2013-06-10 \n", + "1 true NaN 2012-07-04 \n", + "2 false NaN 2012-07-20 \n", + "3 false The Odum Institute houses one of the oldest an... 2012-07-23 \n", + "4 true ADS is covered by Clarivate Data Citation Inde... 2012-07-23 \n", + "\n", + " last_update \n", + "0 2021-07-06 \n", + "1 2021-05-25 \n", + "2 2020-08-27 \n", + "3 2020-11-30 \n", + "4 2021-06-11 " + ] + }, + "execution_count": 20, + "metadata": {}, + "output_type": "execute_result" + } + ], "source": [ - "**re3data**" + "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t', \n", + " converters={'subject': ast.literal_eval,\n", + " 'keyword': ast.literal_eval,\n", + " 'additional_name': ast.literal_eval,\n", + " 'repository_id': ast.literal_eval,\n", + " 'type': ast.literal_eval,\n", + " 'content_type': ast.literal_eval,\n", + " 'provider_type': ast.literal_eval,\n", + " 'institution': ast.literal_eval\n", + " })\n", + "re3data_df.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "Index(['openaire_id', 're3data_id', 'repository_name', 'additional_name',\n", + " 'repository_url', 'repository_id', 'description', 'type', 'size',\n", + " 'update_date', 'start_date', 'end_date', 'subject', 'mission_statement',\n", + " 'content_type', 'provider_type', 'keyword', 'institution', 'policy',\n", + " 'database_access', 'database_license', 'data_access', 'data_license',\n", + " 'data_upload', 'data_upload_license', 'software', 'versioning', 'api',\n", + " 'pid_system', 'citation_guideline_url', 'aid_system',\n", + " 'enhanced_publication', 'quality_management', 'certificate',\n", + " 'metadata_standard', 'syndication', 'remarks', 'entry_date',\n", + " 'last_update'],\n", + " dtype='object')" + ] + }, + "execution_count": 14, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "re3data_df.columns" ] }, { @@ -67,247 +527,307 @@ " \n", " \n", " \n", + " openaire_id\n", " re3data_id\n", " repository_name\n", + " additional_name\n", + " repository_url\n", + " repository_id\n", + " description\n", " type\n", + " size\n", + " update_date\n", + " start_date\n", + " end_date\n", " subject\n", + " mission_statement\n", + " content_type\n", " provider_type\n", " keyword\n", " institution\n", - " \n", - " \n", - " \n", - " \n", - " 0\n", - " r3d100000001\n", - " Odum Institute Archive Dataverse\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", - " [dataProvider]\n", - " [FAIR, Middle East, crime, demography, economy...\n", - " [[Odum Institute for Research in Social Scienc...\n", - " \n", - " \n", - " 1\n", - " r3d100000002\n", - " Access to Archival Databases\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 102 History...\n", - " [dataProvider]\n", - " [US History]\n", - " [[The U.S. National Archives and Records Admin...\n", - " \n", - " \n", - " 2\n", - " r3d100000004\n", - " Datenbank Gesprochenes Deutsch\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 104 Linguis...\n", - " [dataProvider, serviceProvider]\n", - " [Australian German, FOLK, German dialects, Pfe...\n", - " [[Institut für Deutsche Sprache, Archiv für Ge...\n", - " \n", - " \n", - " 3\n", - " r3d100000005\n", - " UNC Dataverse\n", - " [institutional]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", - " [dataProvider, serviceProvider]\n", - " [FAIR, census, demographic survey, demography,...\n", - " [[Odum Institute for Research in Social Scienc...\n", - " \n", - " \n", - " 4\n", - " r3d100000006\n", - " Archaeology Data Service\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 101 Ancient...\n", - " [dataProvider, serviceProvider]\n", - " [FAIR, archaeology, cultural heritage, prehist...\n", - " [[Arts and Humanities Research Council, [AHRC]...\n", - " \n", - " \n", - "\n", - "" - ], - "text/plain": [ - " re3data_id repository_name type \\\n", - "0 r3d100000001 Odum Institute Archive Dataverse [disciplinary] \n", - "1 r3d100000002 Access to Archival Databases [disciplinary] \n", - "2 r3d100000004 Datenbank Gesprochenes Deutsch [disciplinary] \n", - "3 r3d100000005 UNC Dataverse [institutional] \n", - "4 r3d100000006 Archaeology Data Service [disciplinary] \n", - "\n", - " subject \\\n", - "0 [1 Humanities and Social Sciences, 111 Social ... \n", - "1 [1 Humanities and Social Sciences, 102 History... \n", - "2 [1 Humanities and Social Sciences, 104 Linguis... \n", - "3 [1 Humanities and Social Sciences, 111 Social ... \n", - "4 [1 Humanities and Social Sciences, 101 Ancient... \n", - "\n", - " provider_type \\\n", - "0 [dataProvider] \n", - "1 [dataProvider] \n", - "2 [dataProvider, serviceProvider] \n", - "3 [dataProvider, serviceProvider] \n", - "4 [dataProvider, serviceProvider] \n", - "\n", - " keyword \\\n", - "0 [FAIR, Middle East, crime, demography, economy... \n", - "1 [US History] \n", - "2 [Australian German, FOLK, German dialects, Pfe... \n", - "3 [FAIR, census, demographic survey, demography,... \n", - "4 [FAIR, archaeology, cultural heritage, prehist... \n", - "\n", - " institution \n", - "0 [[Odum Institute for Research in Social Scienc... \n", - "1 [[The U.S. National Archives and Records Admin... \n", - "2 [[Institut für Deutsche Sprache, Archiv für Ge... \n", - "3 [[Odum Institute for Research in Social Scienc... \n", - "4 [[Arts and Humanities Research Council, [AHRC]... " - ] - }, - "execution_count": 3, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t', \n", - " converters={'subject': ast.literal_eval,\n", - " 'keyword': ast.literal_eval,\n", - " 'additional_name': ast.literal_eval,\n", - " 'repository_id': ast.literal_eval,\n", - " 'type': ast.literal_eval,\n", - " 'content_type': ast.literal_eval,\n", - " 'provider_type': ast.literal_eval,\n", - " 'institution': ast.literal_eval\n", - " },\n", - " usecols=['re3data_id', 'repository_name', 'subject', 'keyword', 'type', 'provider_type', 'institution'])\n", - "re3data_df.head()" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**HERE I AM FILTERING SERVICE PROVIDERS OUT!!**" - ] - }, - { - "cell_type": "code", - "execution_count": 4, - "metadata": {}, - "outputs": [], - "source": [ - "re3data_df = re3data_df.explode('provider_type')\n", - "re3data_df = re3data_df[re3data_df.provider_type != 'serviceProvider']" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "metadata": { - "scrolled": false - }, - "outputs": [ - { - "data": { - "text/html": [ - "
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1r3d100000002Access to Archival Databases[disciplinary][1 Humanities and Social Sciences, 102 History...[dataProvider][US History][[The U.S. National Archives and Records Admin...
2r3d100000004Datenbank Gesprochenes Deutsch[disciplinary][1 Humanities and Social Sciences, 104 Linguis...[dataProvider, serviceProvider][Australian German, FOLK, German dialects, Pfe...[[Institut für Deutsche Sprache, Archiv für Ge...
3r3d100000005UNC Dataverse[institutional][1 Humanities and Social Sciences, 111 Social ...[dataProvider, serviceProvider][FAIR, census, demographic survey, demography,...[[Odum Institute for Research in Social Scienc...
4r3d100000006Archaeology Data Service[disciplinary][1 Humanities and Social Sciences, 101 Ancient...[dataProvider, serviceProvider][FAIR, archaeology, cultural heritage, prehist...[[Arts and Humanities Research Council, [AHRC]...
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" - ], "text/plain": [ - " re3data_id repository_name type \\\n", - "0 r3d100000001 Odum Institute Archive Dataverse [disciplinary] \n", - "1 r3d100000002 Access to Archival Databases [disciplinary] \n", - "2 r3d100000004 Datenbank Gesprochenes Deutsch [disciplinary] \n", - "3 r3d100000005 UNC Dataverse [institutional] \n", - "4 r3d100000006 Archaeology Data Service [disciplinary] \n", - "\n", - " subject \\\n", - "0 [1 Humanities and Social Sciences, 111 Social ... \n", - "1 [1 Humanities and Social Sciences, 102 History... \n", - "2 [1 Humanities and Social Sciences, 104 Linguis... \n", - "3 [1 Humanities and Social Sciences, 111 Social ... \n", - "4 [1 Humanities and Social Sciences, 101 Ancient... \n", - "\n", - " provider_type \\\n", - "0 [dataProvider] \n", - "1 [dataProvider] \n", - "2 [dataProvider, serviceProvider] \n", - "3 [dataProvider, serviceProvider] \n", - "4 [dataProvider, serviceProvider] \n", - "\n", - " keyword \\\n", - "0 [FAIR, Middle East, crime, demography, economy... \n", - "1 [US History] \n", - "2 [Australian German, FOLK, German dialects, Pfe... \n", - "3 [FAIR, census, demographic survey, demography,... \n", - "4 [FAIR, archaeology, cultural heritage, prehist... \n", - "\n", - " institution \n", - "0 [[Odum Institute for Research in Social Scienc... \n", - "1 [[The U.S. National Archives and Records Admin... \n", - "2 [[Institut für Deutsche Sprache, Archiv für Ge... \n", - "3 [[Odum Institute for Research in Social Scienc... \n", - "4 [[Arts and Humanities Research Council, [AHRC]... " + "Index(['eprintid', 'rev_number', 'eprint_status', 'userid', 'importid',\n", + " 'source', 'dir', 'datestamp', 'lastmod', 'status_changed', 'type',\n", + " 'succeeds', 'commentary', 'metadata_visibility', 'latitude',\n", + " 'longitude', 'relation_type', 'relation_uri', 'item_issues_id',\n", + " 'item_issues_type', 'item_issues_description', 'item_issues_timestamp',\n", + " 'item_issues_status', 'item_issues_reported_by',\n", + " 'item_issues_resolved_by', 'item_issues_comment', 'item_issues_count',\n", + " 'sword_depositor', 'sword_slug', 'exemplar', 'home_page', 'title',\n", + " 'oai_pmh', 'sword_endpoint', 'rss_feed', 'twitter_feed', 'description',\n", + " 'fulltext', 'open_access', 'mandate', 'organisation_title',\n", + " 'organisation_home_page', 'location_country', 'location_city',\n", + " 'location_latitude', 'location_longitude', 'software', 'geoname',\n", + " 'version', 'subjects', 'date', 'note', 'suggestions', 'activity_low',\n", + " 'activity_medium', 'activity_high', 'recordcount', 'recordhistory',\n", + " 'fulltexts_total', 'fulltexts_docs', 'fulltexts_rtotal',\n", + " 'fulltexts_rdocs', 'registry_name', 'registry_id', 'submit_to',\n", + " 'submitted_to_name', 'submitted_to_done', 'webometrics_rank',\n", + " 'webometrics_size', 'webometrics_visibility', 'webometrics_rich_files',\n", + " 'webometrics_scholar', 'monthly_deposits', 'total_deposits',\n", + " 'association'],\n", + " dtype='object')" ] }, "execution_count": 3, @@ -174,43 +728,13 @@ } ], "source": [ - "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t', \n", - " converters={'subject': ast.literal_eval,\n", - " 'keyword': ast.literal_eval,\n", - " 'additional_name': ast.literal_eval,\n", - " 'repository_id': ast.literal_eval,\n", - " 'type': ast.literal_eval,\n", - " 'content_type': ast.literal_eval,\n", - " 'provider_type': ast.literal_eval,\n", - " 'institution': ast.literal_eval\n", - " },\n", - " usecols=['re3data_id', 'repository_name', 'subject', 'keyword', 'type', 'provider_type', 'institution'])\n", - "re3data_df.head()" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**HERE I AM FILTERING SERVICE PROVIDERS OUT!!**" + "roar_df.columns" ] }, { "cell_type": "code", "execution_count": 4, "metadata": {}, - "outputs": [], - "source": [ - "re3data_df = re3data_df.explode('provider_type')\n", - "re3data_df = re3data_df[re3data_df.provider_type != 'serviceProvider']" - ] - }, - { - "cell_type": "code", - "execution_count": 5, - "metadata": { - "scrolled": false - }, "outputs": [ { "data": { @@ -233,78 +757,1010 @@ " \n", " \n", " \n", - " re3data_id\n", - " repository_name\n", + " eprintid\n", + " rev_number\n", + " eprint_status\n", + " userid\n", + " importid\n", + " source\n", + " dir\n", + " datestamp\n", + " lastmod\n", + " status_changed\n", " type\n", - " subject\n", - " provider_type\n", - " keyword\n", - " institution\n", + " succeeds\n", + " commentary\n", + " metadata_visibility\n", + " latitude\n", + " longitude\n", + " relation_type\n", + " relation_uri\n", + " item_issues_id\n", + " item_issues_type\n", + " item_issues_description\n", + " item_issues_timestamp\n", + " item_issues_status\n", + " item_issues_reported_by\n", + " item_issues_resolved_by\n", + " item_issues_comment\n", + " item_issues_count\n", + " sword_depositor\n", + " sword_slug\n", + " exemplar\n", + " home_page\n", + " title\n", + " oai_pmh\n", + " sword_endpoint\n", + " rss_feed\n", + " twitter_feed\n", + " description\n", + " fulltext\n", + " open_access\n", + " mandate\n", + " organisation_title\n", + " organisation_home_page\n", + " location_country\n", + " location_city\n", + " location_latitude\n", + " location_longitude\n", + " software\n", + " geoname\n", + " version\n", + " subjects\n", + " date\n", + " note\n", + " suggestions\n", + " activity_low\n", + " activity_medium\n", + " activity_high\n", + " recordcount\n", + " recordhistory\n", + " fulltexts_total\n", + " fulltexts_docs\n", + " fulltexts_rtotal\n", + " fulltexts_rdocs\n", + " registry_name\n", + " registry_id\n", + " submit_to\n", + " submitted_to_name\n", + " submitted_to_done\n", + " webometrics_rank\n", + " webometrics_size\n", + " webometrics_visibility\n", + " webometrics_rich_files\n", + " webometrics_scholar\n", + " monthly_deposits\n", + " total_deposits\n", + " association\n", " \n", " \n", " \n", " \n", " count\n", - 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"unique 1282 1 \n", - "top [1 Humanities and Social Sciences, 2 Life Scie... dataProvider \n", - "freq 200 2459 \n", + " dir datestamp lastmod \\\n", + "count 5375 5375 5375 \n", + "unique 5375 4127 3966 \n", + "top disk0/00/00/12/03 2010-01-06 13:43:48 2011-07-06 08:24:53 \n", + "freq 1 16 8 \n", "\n", - " keyword institution \n", - "count 2467 2467 \n", - "unique 2248 2447 \n", - "top [multidisciplinary] [[National Center for Biotechnology Informatio... \n", - "freq 181 6 " + " status_changed type succeeds commentary \\\n", + "count 5375 5375 107 0 \n", + "unique 4158 12 107 0 \n", + "top 2010-01-06 13:43:48 institutional 10164 NaN \n", + "freq 16 3795 1 NaN \n", + "\n", + " metadata_visibility latitude longitude relation_type relation_uri \\\n", + "count 5375 0 0 0 0 \n", + "unique 2 0 0 0 0 \n", + "top show NaN NaN NaN NaN \n", + "freq 5334 NaN NaN NaN NaN \n", + "\n", + " item_issues_id item_issues_type \\\n", + "count 86 86 \n", + "unique 51 3 \n", + "top bad_oai_pmh_url_0 duplicate_title \n", + "freq 18 47 \n", + "\n", + " item_issues_description \\\n", + "count 86 \n", + "unique 68 \n", + "top Similar title to \n", + "\n", + "\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + "
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\n", + "" + ], + "text/plain": [ + " eprintid rev_number eprint_status userid importid source dir \\\n", + "2 606 657 archive 1 NaN NaN disk0/00/00/06/06 \n", + "3 606 NaN NaN NaN NaN NaN NaN \n", + "4 606 NaN NaN NaN NaN NaN NaN \n", + "\n", + " datestamp lastmod status_changed type \\\n", + "2 2010-01-06 13:44:31 2016-04-17 21:53:14 2010-01-06 13:44:31 subject \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " succeeds commentary metadata_visibility latitude longitude relation_type \\\n", + "2 NaN NaN show NaN NaN NaN \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " relation_uri item_issues_id item_issues_type item_issues_description \\\n", + "2 NaN NaN NaN NaN \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " item_issues_timestamp item_issues_status item_issues_reported_by \\\n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " item_issues_resolved_by item_issues_comment item_issues_count \\\n", + "2 NaN NaN 0 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " sword_depositor sword_slug exemplar home_page \\\n", + "2 NaN NaN NaN http://hal.archives-ouvertes.fr/ \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " title oai_pmh \\\n", + "2 HAL: Hyper Article en Ligne http://hal.archives-ouvertes.fr/oai/oai.php \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " sword_endpoint rss_feed twitter_feed description fulltext open_access \\\n", + "2 NaN NaN NaN NaN TRUE TRUE \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " mandate organisation_title organisation_home_page location_country \\\n", + "2 NaN NaN NaN fr \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " location_city location_latitude location_longitude software geoname \\\n", + "2 NaN NaN NaN hal geoname_2_FR \n", + "3 NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN \n", + "\n", + " version subjects date note suggestions activity_low \\\n", + "2 other NaN 1998-11-02 11:53:57 NaN NaN 0 \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " activity_medium activity_high recordcount \\\n", + "2 0 2 675816 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " recordhistory fulltexts_total \\\n", + "2 4,12,17,26,43,57,81,185,431,861,1184,1517,2442... NaN \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " fulltexts_docs fulltexts_rtotal fulltexts_rdocs registry_name registry_id \\\n", + "2 NaN NaN NaN opendoar 166 \n", + "3 NaN NaN NaN celestial 1106 \n", + "4 NaN NaN NaN roarmap 69 \n", + "\n", + " submit_to submitted_to_name submitted_to_done webometrics_rank \\\n", + "2 NaN NaN NaN 1 \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " webometrics_size webometrics_visibility webometrics_rich_files \\\n", + "2 6 1 1 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " webometrics_scholar monthly_deposits \\\n", + "2 1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,... \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " total_deposits association \n", + "2 3063 NaN \n", + "3 NaN NaN \n", + "4 NaN NaN " ] }, "execution_count": 5, @@ -313,14 +1769,7 @@ } ], "source": [ - "re3data_df.describe(include='all')" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**openDOAR**" + "roar_df[roar_df.eprintid == '606']" ] }, { @@ -349,79 +1798,417 @@ " \n", " \n", " \n", - " opendoar_id\n", - " repository_name\n", + " eprintid\n", + " rev_number\n", + " eprint_status\n", + " userid\n", + " importid\n", + " source\n", + " dir\n", + " datestamp\n", + " lastmod\n", + " status_changed\n", " type\n", - " subject\n", - " institution\n", + " succeeds\n", + " commentary\n", + " metadata_visibility\n", + " latitude\n", + " longitude\n", + " relation_type\n", + " relation_uri\n", + " item_issues_id\n", + " item_issues_type\n", + " item_issues_description\n", + " item_issues_timestamp\n", + " item_issues_status\n", + " item_issues_reported_by\n", + " item_issues_resolved_by\n", + " item_issues_comment\n", + " item_issues_count\n", + " sword_depositor\n", + " sword_slug\n", + " exemplar\n", + " home_page\n", + " title\n", + " oai_pmh\n", + " sword_endpoint\n", + " rss_feed\n", + " twitter_feed\n", + " description\n", + " fulltext\n", + " open_access\n", + " mandate\n", + " organisation_title\n", + " organisation_home_page\n", + " location_country\n", + " location_city\n", + " location_latitude\n", + " location_longitude\n", + " software\n", + " geoname\n", + " version\n", + " subjects\n", + " date\n", + " note\n", + " suggestions\n", + " activity_low\n", + " activity_medium\n", + " activity_high\n", + " recordcount\n", + " recordhistory\n", + " fulltexts_total\n", + " fulltexts_docs\n", + " fulltexts_rtotal\n", + " fulltexts_rdocs\n", + " registry_name\n", + " registry_id\n", + " submit_to\n", + " submitted_to_name\n", + " submitted_to_done\n", + " webometrics_rank\n", + " webometrics_size\n", + " webometrics_visibility\n", + " webometrics_rich_files\n", + " webometrics_scholar\n", + " monthly_deposits\n", + " total_deposits\n", + " association\n", " \n", " \n", " \n", " \n", - " 0\n", - " 101\n", - " utrecht university repository\n", - " institutional\n", - " [multidisciplinary]\n", - " [[university of utrecht, [universiteit utrecht...\n", - " \n", - " \n", - " 1\n", - " 115\n", - " dspace at indian institute of management kozhi...\n", - " institutional\n", - " [ecology and environment, social sciences gene...\n", - " [[indian institute of management kozhikode, [i...\n", - " \n", - " \n", " 2\n", - " 41\n", - " caltech engineering and science online\n", - " institutional\n", - " [biology and biochemistry, chemistry and chemi...\n", - " [[california institute of technology, [caltech...\n", + " 606\n", + " 657\n", + " archive\n", + " 1\n", + " NaN\n", + " NaN\n", + " disk0/00/00/06/06\n", + " 2010-01-06 13:44:31\n", + " 2016-04-17 21:53:14\n", + " 2010-01-06 13:44:31\n", + " subject\n", + " NaN\n", + " NaN\n", + " show\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " 0\n", + " NaN\n", + " NaN\n", + " NaN\n", + " http://hal.archives-ouvertes.fr/\n", + " HAL: Hyper Article en Ligne\n", + " http://hal.archives-ouvertes.fr/oai/oai.php\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " TRUE\n", + " TRUE\n", + " NaN\n", + " NaN\n", + " NaN\n", + " fr\n", + " NaN\n", + " NaN\n", + " NaN\n", + " hal\n", + " geoname_2_FR\n", + " other\n", + " NaN\n", + " 1998-11-02 11:53:57\n", + " NaN\n", + " NaN\n", + " 0\n", + " 0\n", + " 2\n", + " 675816\n", + " 4,12,17,26,43,57,81,185,431,861,1184,1517,2442...\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " opendoar\n", + " 166\n", + " NaN\n", + " NaN\n", + " NaN\n", + " 1\n", + " 6\n", + " 1\n", + " 1\n", + " 1\n", + " 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,...\n", + " 3063\n", + " NaN\n", " \n", " \n", " 3\n", - " 119\n", - " dcu online research access service\n", - " institutional\n", - " [multidisciplinary]\n", - " [[dublin city university, [dcu], ie, [], , htt...\n", + " 606\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " celestial\n", + " 1106\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", " \n", " \n", " 4\n", - " 129\n", - " earth-prints repository\n", - " disciplinary\n", - " [earth and planetary sciences]\n", - " [[istituto nazionale di geofisica e vulcanolog...\n", + " 606\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " roarmap\n", + " 69\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", + " NaN\n", " \n", " \n", "\n", "" ], "text/plain": [ - " opendoar_id repository_name \\\n", - "0 101 utrecht university repository \n", - "1 115 dspace at indian institute of management kozhi... \n", - "2 41 caltech engineering and science online \n", - "3 119 dcu online research access service \n", - "4 129 earth-prints repository \n", + " eprintid rev_number eprint_status userid importid source dir \\\n", + "2 606 657 archive 1 NaN NaN disk0/00/00/06/06 \n", + "3 606 NaN NaN NaN NaN NaN NaN \n", + "4 606 NaN NaN NaN NaN NaN NaN \n", "\n", - " type subject \\\n", - "0 institutional [multidisciplinary] \n", - "1 institutional [ecology and environment, social sciences gene... \n", - "2 institutional [biology and biochemistry, chemistry and chemi... \n", - "3 institutional [multidisciplinary] \n", - "4 disciplinary [earth and planetary sciences] \n", + " datestamp lastmod status_changed type \\\n", + "2 2010-01-06 13:44:31 2016-04-17 21:53:14 2010-01-06 13:44:31 subject \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", "\n", - " institution \n", - "0 [[university of utrecht, [universiteit utrecht... \n", - "1 [[indian institute of management kozhikode, [i... \n", - "2 [[california institute of technology, [caltech... \n", - "3 [[dublin city university, [dcu], ie, [], , htt... \n", - "4 [[istituto nazionale di geofisica e vulcanolog... " + " succeeds commentary metadata_visibility latitude longitude relation_type \\\n", + "2 NaN NaN show NaN NaN NaN \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " relation_uri item_issues_id item_issues_type item_issues_description \\\n", + "2 NaN NaN NaN NaN \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " item_issues_timestamp item_issues_status item_issues_reported_by \\\n", + "2 NaN NaN NaN \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " item_issues_resolved_by item_issues_comment item_issues_count \\\n", + "2 NaN NaN 0 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " sword_depositor sword_slug exemplar home_page \\\n", + "2 NaN NaN NaN http://hal.archives-ouvertes.fr/ \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " title oai_pmh \\\n", + "2 HAL: Hyper Article en Ligne http://hal.archives-ouvertes.fr/oai/oai.php \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " sword_endpoint rss_feed twitter_feed description fulltext open_access \\\n", + "2 NaN NaN NaN NaN TRUE TRUE \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " mandate organisation_title organisation_home_page location_country \\\n", + "2 NaN NaN NaN fr \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " location_city location_latitude location_longitude software geoname \\\n", + "2 NaN NaN NaN hal geoname_2_FR \n", + "3 NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN \n", + "\n", + " version subjects date note suggestions activity_low \\\n", + "2 other NaN 1998-11-02 11:53:57 NaN NaN 0 \n", + "3 NaN NaN NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN NaN NaN \n", + "\n", + " activity_medium activity_high recordcount \\\n", + "2 0 2 675816 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " recordhistory fulltexts_total \\\n", + "2 4,12,17,26,43,57,81,185,431,861,1184,1517,2442... NaN \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " fulltexts_docs fulltexts_rtotal fulltexts_rdocs registry_name registry_id \\\n", + "2 NaN NaN NaN opendoar 166 \n", + "3 NaN NaN NaN celestial 1106 \n", + "4 NaN NaN NaN roarmap 69 \n", + "\n", + " submit_to submitted_to_name submitted_to_done webometrics_rank \\\n", + "2 NaN NaN NaN 1 \n", + "3 NaN NaN NaN NaN \n", + "4 NaN NaN NaN NaN \n", + "\n", + " webometrics_size webometrics_visibility webometrics_rich_files \\\n", + "2 6 1 1 \n", + "3 NaN NaN NaN \n", + "4 NaN NaN NaN \n", + "\n", + " webometrics_scholar monthly_deposits \\\n", + "2 1 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,... \n", + "3 NaN NaN \n", + "4 NaN NaN \n", + "\n", + " total_deposits association \n", + "2 3063 NaN \n", + "3 NaN NaN \n", + "4 NaN NaN " ] }, "execution_count": 6, @@ -430,15 +2217,7 @@ } ], "source": [ - "opendoar_df = pd.read_csv('../data/raw/openDoar.tsv', delimiter='\\t',\n", - " converters={'subject': ast.literal_eval,\n", - " 'additional_name': ast.literal_eval,\n", - " 'opendoar_id': ast.literal_eval,\n", - " 'content_type': ast.literal_eval,\n", - " 'institution': ast.literal_eval\n", - " },\n", - " usecols=['opendoar_id', 'repository_name', 'subject', 'type', 'institution'])\n", - "opendoar_df.head()" + "roar_df[roar_df.eprintid == '606']" ] }, { @@ -467,132 +2246,757 @@ " \n", " \n", " \n", - " opendoar_id\n", - " repository_name\n", + " rev_number\n", + " eprint_status\n", + " userid\n", + " importid\n", + " source\n", + " dir\n", + " datestamp\n", + " lastmod\n", + " status_changed\n", " type\n", - " subject\n", - " institution\n", + " succeeds\n", + " commentary\n", + " metadata_visibility\n", + " latitude\n", + " longitude\n", + " relation_type\n", + " relation_uri\n", + " item_issues_id\n", + " item_issues_type\n", + " item_issues_description\n", + " item_issues_timestamp\n", + " item_issues_status\n", + " item_issues_reported_by\n", + " item_issues_resolved_by\n", + " item_issues_comment\n", + " item_issues_count\n", + " sword_depositor\n", + " sword_slug\n", + " exemplar\n", + " home_page\n", + " title\n", + " oai_pmh\n", + " sword_endpoint\n", + " rss_feed\n", + " twitter_feed\n", + " description\n", + " fulltext\n", + " open_access\n", + " mandate\n", + " organisation_title\n", + " organisation_home_page\n", + " location_country\n", + " location_city\n", + " location_latitude\n", + " location_longitude\n", + " software\n", + " geoname\n", + " version\n", + " subjects\n", + " date\n", + " note\n", + " suggestions\n", + " activity_low\n", + " activity_medium\n", + " activity_high\n", + " recordcount\n", + " recordhistory\n", + " fulltexts_total\n", + " fulltexts_docs\n", + " fulltexts_rtotal\n", + " fulltexts_rdocs\n", + " registry_name\n", + " registry_id\n", + " submit_to\n", + " submitted_to_name\n", + " submitted_to_done\n", + " webometrics_rank\n", + " webometrics_size\n", + " webometrics_visibility\n", + " webometrics_rich_files\n", + " webometrics_scholar\n", + " monthly_deposits\n", + " total_deposits\n", + " association\n", + " \n", + " \n", + " eprintid\n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", + " \n", " \n", " \n", " \n", " \n", - " count\n", - " 5707.000000\n", - " 5707\n", - " 5707\n", - " 5707\n", - " 5707\n", + " 1\n", + " {nan, 633}\n", + " {nan, archive}\n", + " {nan, 1}\n", + " {nan}\n", + " {nan}\n", + " {disk0/00/00/00/01, nan}\n", + " {nan, 2010-01-06 13:43:48}\n", + " {nan, 2011-07-18 05:40:07}\n", + " {nan, 2010-01-06 13:43:48}\n", + " {nan, subject}\n", + " {nan}\n", + " {nan}\n", + " {nan, show}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, 0}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, http://archivesic.ccsd.cnrs.fr/}\n", + " {nan, @RCHIVESIC }\n", + " {nan, http://archivesic.ccsd.cnrs.fr/oai/oai.php}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, fr}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, hal}\n", + " {nan, geoname_2_FR}\n", + " {nan, other}\n", + " {nan}\n", + " {nan, 2002-05-17 19:24:41}\n", + " {nan}\n", + " {nan}\n", + " {nan, 0}\n", + " {nan, 0}\n", + " {nan, 0}\n", + " {nan, 25}\n", + " {nan, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,...\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {opendoar, celestial}\n", + " {58, 669}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", " \n", " \n", - " unique\n", - " NaN\n", - " 5670\n", - " 4\n", - " 820\n", - " 5098\n", + " 10\n", + " {nan, 511}\n", + " {nan, archive}\n", + " {nan, 1}\n", + " {nan}\n", + " {nan}\n", + " {nan, disk0/00/00/00/10}\n", + " {nan, 2010-01-06 13:43:48}\n", + " {2011-07-18 05:40:13, nan}\n", + " {nan, 2010-01-06 13:43:48}\n", + " {nan, institutional}\n", + " {nan}\n", + " {nan}\n", + " {nan, show}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, 0}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, http://www.diva-portal.org/mdh/}\n", + " {nan, Academic Archive On-line (Mälardalen Uni...\n", + " {http://www.diva-portal.org/oai/mdh/OAI, nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {TRUE, nan}\n", + " {TRUE, nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, se}\n", + " {nan, Uppsala}\n", + " {nan, 59.8667}\n", + " {17.6333, nan}\n", + " {nan, diva}\n", + " {nan, geoname_2_SE}\n", + " {nan, other}\n", + " {nan}\n", + " {nan, 2005-12-08 13:15:22}\n", + " {nan}\n", + " {nan}\n", + " {nan, 0}\n", + " {nan, 0}\n", + " {nan, 0}\n", + " {nan, 100}\n", + " {nan, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,1...\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {opendoar, celestial}\n", + " {526, 258}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", " \n", " \n", - " top\n", - " NaN\n", - " arch\n", - " institutional\n", - " [multidisciplinary]\n", - " [[rijksuniversiteit groningen, [rug], nl, [], ...\n", + " 1000\n", + " {274}\n", + " {archive}\n", + " {1}\n", + " {nan}\n", + " {nan}\n", + " {disk0/00/00/10/00}\n", + " {2010-01-06 13:45:01}\n", + " {2011-07-06 08:21:21}\n", + " {2010-01-06 13:45:01}\n", + " {subject}\n", + " {nan}\n", + " {nan}\n", + " {show}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {0}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {http://pam.pisharp.org/}\n", + " {PAM - Portuguese Archive of Mathematics}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {TRUE}\n", + " {TRUE}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {pt}\n", + " {Bellevue, WA}\n", + " {47.6034}\n", + " {-122.155}\n", + " {dspace}\n", + " {geoname_2_PT}\n", + " {other}\n", + " {nan}\n", + " {2006-05-04 10:48:14}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", " \n", " \n", - " freq\n", - " NaN\n", - " 3\n", - " 5067\n", - " 3212\n", - " 26\n", + " 10001\n", + " {nan, 20}\n", + " {nan, archive}\n", + " {nan, 91}\n", + " {nan}\n", + " {nan}\n", + " {nan, disk0/00/01/00/01}\n", + " {nan, 2015-08-08 14:52:11}\n", + " {nan, 2016-03-21 19:44:01}\n", + " {nan, 2015-08-08 14:52:11}\n", + " {nan, subject}\n", + " {nan}\n", + " {nan}\n", + " {nan, show}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, http://edoc.sub.uni-hamburg.de/klimawand...\n", + " {nan, Klimawandel Dokumentenserver}\n", + " {nan, http://edoc.sub.uni-hamburg.de/klimawand...\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, The \"Documentenserver Klimawandel\" (Repo...\n", + " {TRUE, nan}\n", + " {TRUE, nan}\n", + " {TRUE, nan}\n", + " {nan, KLIMZUG projects, Climate Service Center...\n", + " {nan, http://www.climateservicecenter.de/, htt...\n", + " {nan, de}\n", + " {nan, Hamburg}\n", + " {nan, 53.5511}\n", + " {nan, 9.9937}\n", + " {nan, opus}\n", + " {nan, geoname_2_DE}\n", + " {nan, other}\n", + " {G1, HD, GE, GF, S1}\n", + " {nan, 2015-07-02 08:08:31}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan, opendoar, celestial}\n", + " {nan, 3408, 5881}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", " \n", " \n", - " mean\n", - " 4008.118801\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " std\n", - " 2869.948770\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " min\n", - " 2.000000\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " 25%\n", - " 1823.000000\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " 50%\n", - " 3361.000000\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " 75%\n", - " 5095.000000\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", - " \n", - " \n", - " max\n", - " 10175.000000\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NaN\n", + " 10008\n", + " {11}\n", + " {archive}\n", + " {404}\n", + " {nan}\n", + " {nan}\n", + " {disk0/00/01/00/08}\n", + " {2015-08-08 14:52:26}\n", + " {2016-03-21 19:43:51}\n", + " {2015-08-08 14:52:26}\n", + " {institutional}\n", + " {nan}\n", + " {nan}\n", + " {show}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {http://creativematter.skidmore.edu/}\n", + " {Creative Matter | Skidmore College Research}\n", + " {http://creativematter.skidmore.edu/do/oai/}\n", + " {nan}\n", + " {http://creativematter.skidmore.edu/recent.rss}\n", + " {nan}\n", + " {Welcome to Creative Matter, a repository for ...\n", + " {TRUE}\n", + " {FALSE}\n", + " {FALSE}\n", + " {Skidmore College}\n", + " {http://www.skidmore.edu/}\n", + " {us}\n", + " {Saratoga Springs}\n", + " {43.0961}\n", + " {-73.7818}\n", + " {bepress}\n", + " {geoname_2_US}\n", + " {other}\n", + " {nan}\n", + " {2015-07-06 17:35:50}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {celestial}\n", + " {5882}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", + " {nan}\n", " \n", " \n", "\n", "" ], "text/plain": [ - " opendoar_id repository_name type subject \\\n", - "count 5707.000000 5707 5707 5707 \n", - "unique NaN 5670 4 820 \n", - "top NaN arch institutional [multidisciplinary] \n", - "freq NaN 3 5067 3212 \n", - "mean 4008.118801 NaN NaN NaN \n", - "std 2869.948770 NaN NaN NaN \n", - "min 2.000000 NaN NaN NaN \n", - "25% 1823.000000 NaN NaN NaN \n", - "50% 3361.000000 NaN NaN NaN \n", - "75% 5095.000000 NaN NaN NaN \n", - "max 10175.000000 NaN NaN NaN \n", + " rev_number eprint_status userid importid source \\\n", + "eprintid \n", + "1 {nan, 633} {nan, archive} {nan, 1} {nan} {nan} \n", + "10 {nan, 511} {nan, archive} {nan, 1} {nan} {nan} \n", + "1000 {274} {archive} {1} {nan} {nan} \n", + "10001 {nan, 20} {nan, archive} {nan, 91} {nan} {nan} \n", + "10008 {11} {archive} {404} {nan} {nan} \n", "\n", - " institution \n", - "count 5707 \n", - "unique 5098 \n", - "top [[rijksuniversiteit groningen, [rug], nl, [], ... \n", - "freq 26 \n", - "mean NaN \n", - "std NaN \n", - "min NaN \n", - "25% NaN \n", - "50% NaN \n", - "75% NaN \n", - "max NaN " + " dir datestamp \\\n", + "eprintid \n", + "1 {disk0/00/00/00/01, nan} {nan, 2010-01-06 13:43:48} \n", + "10 {nan, disk0/00/00/00/10} {nan, 2010-01-06 13:43:48} \n", + "1000 {disk0/00/00/10/00} {2010-01-06 13:45:01} \n", + "10001 {nan, disk0/00/01/00/01} {nan, 2015-08-08 14:52:11} \n", + "10008 {disk0/00/01/00/08} {2015-08-08 14:52:26} \n", + "\n", + " lastmod status_changed \\\n", + "eprintid \n", + "1 {nan, 2011-07-18 05:40:07} {nan, 2010-01-06 13:43:48} \n", + "10 {2011-07-18 05:40:13, nan} {nan, 2010-01-06 13:43:48} \n", + "1000 {2011-07-06 08:21:21} {2010-01-06 13:45:01} \n", + "10001 {nan, 2016-03-21 19:44:01} {nan, 2015-08-08 14:52:11} \n", + "10008 {2016-03-21 19:43:51} {2015-08-08 14:52:26} \n", + "\n", + " type succeeds commentary metadata_visibility \\\n", + "eprintid \n", + "1 {nan, subject} {nan} {nan} {nan, show} \n", + "10 {nan, institutional} {nan} {nan} {nan, show} \n", + "1000 {subject} {nan} {nan} {show} \n", + "10001 {nan, subject} {nan} {nan} {nan, show} \n", + "10008 {institutional} {nan} {nan} {show} \n", + "\n", + " latitude longitude relation_type relation_uri item_issues_id \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} {nan} {nan} \n", + "\n", + " item_issues_type item_issues_description item_issues_timestamp \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} \n", + "\n", + " item_issues_status item_issues_reported_by item_issues_resolved_by \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} \n", + "\n", + " item_issues_comment item_issues_count sword_depositor sword_slug \\\n", + "eprintid \n", + "1 {nan} {nan, 0} {nan} {nan} \n", + "10 {nan} {nan, 0} {nan} {nan} \n", + "1000 {nan} {0} {nan} {nan} \n", + "10001 {nan} {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} {nan} \n", + "\n", + " exemplar home_page \\\n", + "eprintid \n", + "1 {nan} {nan, http://archivesic.ccsd.cnrs.fr/} \n", + "10 {nan} {nan, http://www.diva-portal.org/mdh/} \n", + "1000 {nan} {http://pam.pisharp.org/} \n", + "10001 {nan} {nan, http://edoc.sub.uni-hamburg.de/klimawand... \n", + "10008 {nan} {http://creativematter.skidmore.edu/} \n", + "\n", + " title \\\n", + "eprintid \n", + "1 {nan, @RCHIVESIC } \n", + "10 {nan, Academic Archive On-line (Mälardalen Uni... \n", + "1000 {PAM - Portuguese Archive of Mathematics} \n", + "10001 {nan, Klimawandel Dokumentenserver} \n", + "10008 {Creative Matter | Skidmore College Research} \n", + "\n", + " oai_pmh sword_endpoint \\\n", + "eprintid \n", + "1 {nan, http://archivesic.ccsd.cnrs.fr/oai/oai.php} {nan} \n", + "10 {http://www.diva-portal.org/oai/mdh/OAI, nan} {nan} \n", + "1000 {nan} {nan} \n", + "10001 {nan, http://edoc.sub.uni-hamburg.de/klimawand... {nan} \n", + "10008 {http://creativematter.skidmore.edu/do/oai/} {nan} \n", + "\n", + " rss_feed twitter_feed \\\n", + "eprintid \n", + "1 {nan} {nan} \n", + "10 {nan} {nan} \n", + "1000 {nan} {nan} \n", + "10001 {nan} {nan} \n", + "10008 {http://creativematter.skidmore.edu/recent.rss} {nan} \n", + "\n", + " description fulltext \\\n", + "eprintid \n", + "1 {nan} {nan} \n", + "10 {nan} {TRUE, nan} \n", + "1000 {nan} {TRUE} \n", + "10001 {nan, The \"Documentenserver Klimawandel\" (Repo... {TRUE, nan} \n", + "10008 {Welcome to Creative Matter, a repository for ... {TRUE} \n", + "\n", + " open_access mandate \\\n", + "eprintid \n", + "1 {nan} {nan} \n", + "10 {TRUE, nan} {nan} \n", + "1000 {TRUE} {nan} \n", + "10001 {TRUE, nan} {TRUE, nan} \n", + "10008 {FALSE} {FALSE} \n", + "\n", + " organisation_title \\\n", + "eprintid \n", + "1 {nan} \n", + "10 {nan} \n", + "1000 {nan} \n", + "10001 {nan, KLIMZUG projects, Climate Service Center... \n", + "10008 {Skidmore College} \n", + "\n", + " organisation_home_page location_country \\\n", + "eprintid \n", + "1 {nan} {nan, fr} \n", + "10 {nan} {nan, se} \n", + "1000 {nan} {pt} \n", + "10001 {nan, http://www.climateservicecenter.de/, htt... {nan, de} \n", + "10008 {http://www.skidmore.edu/} {us} \n", + "\n", + " location_city location_latitude location_longitude \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan, Uppsala} {nan, 59.8667} {17.6333, nan} \n", + "1000 {Bellevue, WA} {47.6034} {-122.155} \n", + "10001 {nan, Hamburg} {nan, 53.5511} {nan, 9.9937} \n", + "10008 {Saratoga Springs} {43.0961} {-73.7818} \n", + "\n", + " software geoname version \\\n", + "eprintid \n", + "1 {nan, hal} {nan, geoname_2_FR} {nan, other} \n", + "10 {nan, diva} {nan, geoname_2_SE} {nan, other} \n", + "1000 {dspace} {geoname_2_PT} {other} \n", + "10001 {nan, opus} {nan, geoname_2_DE} {nan, other} \n", + "10008 {bepress} {geoname_2_US} {other} \n", + "\n", + " subjects date note suggestions \\\n", + "eprintid \n", + "1 {nan} {nan, 2002-05-17 19:24:41} {nan} {nan} \n", + "10 {nan} {nan, 2005-12-08 13:15:22} {nan} {nan} \n", + "1000 {nan} {2006-05-04 10:48:14} {nan} {nan} \n", + "10001 {G1, HD, GE, GF, S1} {nan, 2015-07-02 08:08:31} {nan} {nan} \n", + "10008 {nan} {2015-07-06 17:35:50} {nan} {nan} \n", + "\n", + " activity_low activity_medium activity_high recordcount \\\n", + "eprintid \n", + "1 {nan, 0} {nan, 0} {nan, 0} {nan, 25} \n", + "10 {nan, 0} {nan, 0} {nan, 0} {nan, 100} \n", + "1000 {nan} {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} {nan} \n", + "\n", + " recordhistory fulltexts_total \\\n", + "eprintid \n", + "1 {nan, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,... {nan} \n", + "10 {nan, 0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,1... {nan} \n", + "1000 {nan} {nan} \n", + "10001 {nan} {nan} \n", + "10008 {nan} {nan} \n", + "\n", + " fulltexts_docs fulltexts_rtotal fulltexts_rdocs \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} \n", + "\n", + " registry_name registry_id submit_to \\\n", + "eprintid \n", + "1 {opendoar, celestial} {58, 669} {nan} \n", + "10 {opendoar, celestial} {526, 258} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan, opendoar, celestial} {nan, 3408, 5881} {nan} \n", + "10008 {celestial} {5882} {nan} \n", + "\n", + " submitted_to_name submitted_to_done webometrics_rank \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} \n", + "\n", + " webometrics_size webometrics_visibility webometrics_rich_files \\\n", + "eprintid \n", + "1 {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} \n", + "\n", + " webometrics_scholar monthly_deposits total_deposits association \n", + "eprintid \n", + "1 {nan} {nan} {nan} {nan} \n", + "10 {nan} {nan} {nan} {nan} \n", + "1000 {nan} {nan} {nan} {nan} \n", + "10001 {nan} {nan} {nan} {nan} \n", + "10008 {nan} {nan} {nan} {nan} " ] }, "execution_count": 7, @@ -601,133 +3005,13 @@ } ], "source": [ - "opendoar_df.describe(include='all')" - ] - }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**ROAR**" - ] - }, - { - "cell_type": "code", - "execution_count": 45, - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
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" - ], - "text/plain": [ - " eprintid home_page \\\n", - "0 921 http://alcme.oclc.org/ndltd/index.html \n", - "1 1489 http://prensahistorica.mcu.es/prensahistorica/... \n", - "2 606 http://hal.archives-ouvertes.fr/ \n", - "3 606 NaN \n", - "4 606 NaN \n", - "\n", - " title location_country subjects \n", - "0 Networked Digital Library of Theses and Disser... us NaN \n", - "1 Virtual Library of Historical Press es NaN \n", - "2 HAL: Hyper Article en Ligne fr NaN \n", - "3 NaN NaN NaN \n", - "4 NaN NaN NaN " - ] - }, - "execution_count": 45, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "roar_df = pd.read_csv('../data/raw/export_roar_CSV.csv',\n", - " usecols=['eprintid', 'home_page', 'title', 'location_country', 'subjects'])\n", + "roar_df = roar_df.groupby('eprintid').aggregate(set)\n", "roar_df.head()" ] }, { "cell_type": "code", - "execution_count": 43, - "metadata": {}, - "outputs": [], - "source": [ - "# roar_df.drop_duplicates(subset=['home_page', 'title' , 'location_country', 'subjects'], keep=False, inplace=True)" - ] - }, - { - "cell_type": "code", - "execution_count": 47, + "execution_count": 9, "metadata": {}, "outputs": [ { @@ -751,454 +3035,1021 @@ " \n", " \n", " \n", - " eprintid\n", + " rev_number\n", + " eprint_status\n", + " userid\n", + " importid\n", + " source\n", + " dir\n", + " datestamp\n", + " lastmod\n", + " status_changed\n", + " type\n", + " succeeds\n", + " commentary\n", + " metadata_visibility\n", + " latitude\n", + " longitude\n", + " relation_type\n", + " relation_uri\n", + " item_issues_id\n", + " item_issues_type\n", + " item_issues_description\n", + " item_issues_timestamp\n", + " item_issues_status\n", + " item_issues_reported_by\n", + " item_issues_resolved_by\n", + " item_issues_comment\n", + " item_issues_count\n", + " sword_depositor\n", + " sword_slug\n", + " exemplar\n", " home_page\n", " title\n", + " oai_pmh\n", + " sword_endpoint\n", + " rss_feed\n", + " twitter_feed\n", + " description\n", + " fulltext\n", + " open_access\n", + " mandate\n", + " organisation_title\n", + " organisation_home_page\n", " location_country\n", + " location_city\n", + " location_latitude\n", + " location_longitude\n", + " software\n", + " geoname\n", + " version\n", " subjects\n", - " \n", - " \n", - " \n", - " \n", - " 106\n", - " 2303\n", - " NaN\n", - " Faculty Scholarship at The Claremont Colleges\n", - " us\n", - " AS\n", + " date\n", + " note\n", + " suggestions\n", + " activity_low\n", + " activity_medium\n", + " activity_high\n", + " recordcount\n", + " recordhistory\n", + " fulltexts_total\n", + " fulltexts_docs\n", + " fulltexts_rtotal\n", + " fulltexts_rdocs\n", + " registry_name\n", + " registry_id\n", + " submit_to\n", + " submitted_to_name\n", + " submitted_to_done\n", + " webometrics_rank\n", + " webometrics_size\n", + " webometrics_visibility\n", + " webometrics_rich_files\n", + " webometrics_scholar\n", + " monthly_deposits\n", + " total_deposits\n", + " association\n", " \n", " \n", - " 107\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " BF\n", - " \n", - " \n", - " 108\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " BL\n", - " \n", - " \n", - " 109\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " CC\n", - " \n", - " \n", - " 110\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " GN\n", - " \n", - " \n", - " 111\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " H1\n", - " \n", - " \n", - " 112\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " HB\n", - " \n", - " \n", - " 113\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " JA\n", - " \n", - " \n", - " 114\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " LB\n", - " \n", - " \n", - " 115\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " NX\n", - " \n", - " \n", - " 116\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " PQ\n", - " \n", - " \n", - " 117\n", - " 2303\n", - " NaN\n", - " NaN\n", - " NaN\n", - " QA\n", - " \n", - " \n", - "\n", - "" - ], - "text/plain": [ - " eprintid home_page title \\\n", - "106 2303 NaN Faculty Scholarship at The Claremont Colleges \n", - "107 2303 NaN NaN \n", - "108 2303 NaN NaN \n", - "109 2303 NaN NaN \n", - "110 2303 NaN NaN \n", - "111 2303 NaN NaN \n", - "112 2303 NaN NaN \n", - "113 2303 NaN NaN \n", - "114 2303 NaN NaN \n", - "115 2303 NaN NaN \n", - "116 2303 NaN NaN \n", - "117 2303 NaN NaN \n", - "\n", - " location_country subjects \n", - "106 us AS \n", - "107 NaN BF \n", - "108 NaN BL \n", - "109 NaN CC \n", - "110 NaN GN \n", - "111 NaN H1 \n", - "112 NaN HB \n", - "113 NaN JA \n", - "114 NaN LB \n", - "115 NaN NX \n", - "116 NaN PQ \n", - "117 NaN QA " - ] - }, - "execution_count": 47, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "roar_df[roar_df.eprintid == 2303]" - ] - }, - { - "cell_type": "code", - "execution_count": 44, - "metadata": {}, - "outputs": [ - { - "data": { - "text/html": [ - "
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0GenBankGenBankhttps://fairsharing.org/10.25504/FAIRsharing.9...https://www.ncbi.nlm.nih.gov/genbank/European Union,Japan,United StatesBioinformatics,Data Management,Data Submission...
1GlycoNAVIGlycoNAVIhttps://fairsharing.org/10.25504/FAIRsharing.w...https://glyconavi.org/JapanChemistry,Glycomics,Life Science,Organic Chemi...633archive1NaNNaNdisk0/00/00/00/012010-01-06 13:43:482011-07-18 05:40:072010-01-06 13:43:48subjectNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN0NaNNaNNaNhttp://archivesic.ccsd.cnrs.fr/@RCHIVESIChttp://archivesic.ccsd.cnrs.fr/oai/oai.phpNaNNaNNaNNaNNaNNaNNaNNaNNaNfrNaNNaNNaNhalgeoname_2_FRotherNaN2002-05-17 19:24:41NaNNaN000250,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,...NaNNaNNaNNaN[opendoar, celestial][58, 669]NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
2ADHDgeneADHDgenehttps://fairsharing.org/10.25504/FAIRsharing.m...http://adhd.psych.ac.cn/ChinaBiomedical Science,Genetics10511archive1NaNNaNdisk0/00/00/00/102010-01-06 13:43:482011-07-18 05:40:132010-01-06 13:43:48institutionalNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN0NaNNaNNaNhttp://www.diva-portal.org/mdh/Academic Archive On-line (Mälardalen Universit...http://www.diva-portal.org/oai/mdh/OAINaNNaNNaNNaNTRUETRUENaNNaNNaNseUppsala59.866717.6333divageoname_2_SEotherNaN2005-12-08 13:15:22NaNNaN0001000,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,100,100...NaNNaNNaNNaN[opendoar, celestial][526, 258]NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
3Allele frequency resource for research and tea...ALFREDhttps://fairsharing.org/10.25504/FAIRsharing.y...http://alfred.med.yale.eduUnited StatesLife Science1000274archive1NaNNaNdisk0/00/00/10/002010-01-06 13:45:012011-07-06 08:21:212010-01-06 13:45:01subjectNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN0NaNNaNNaNhttp://pam.pisharp.org/PAM - Portuguese Archive of MathematicsNaNNaNNaNNaNNaNTRUETRUENaNNaNNaNptBellevue, WA47.6034-122.155dspacegeoname_2_PTotherNaN2006-05-04 10:48:14NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
4Animal Transcription Factor DatabaseAnimalTFDBhttps://fairsharing.org/10.25504/FAIRsharing.e...http://bioinfo.life.hust.edu.cn/AnimalTFDB/ChinaLife Science1000120archive91NaNNaNdisk0/00/01/00/012015-08-08 14:52:112016-03-21 19:44:012015-08-08 14:52:11subjectNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNhttp://edoc.sub.uni-hamburg.de/klimawandel/Klimawandel Dokumentenserverhttp://edoc.sub.uni-hamburg.de/klimawandel/oaiNaNNaNNaNThe \"Documentenserver Klimawandel\" (Repository...TRUETRUETRUE[KLIMZUG projects, Climate Service Center 2.0,...[http://www.climateservicecenter.de/, http://w...deHamburg53.55119.9937opusgeoname_2_DEother[G1, GF, HD, GE, S1]2015-07-02 08:08:31NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN[opendoar, celestial][3408, 5881]NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
1000811archive404NaNNaNdisk0/00/01/00/082015-08-08 14:52:262016-03-21 19:43:512015-08-08 14:52:26institutionalNaNNaNshowNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNhttp://creativematter.skidmore.edu/Creative Matter | Skidmore College Researchhttp://creativematter.skidmore.edu/do/oai/NaNhttp://creativematter.skidmore.edu/recent.rssNaNWelcome to Creative Matter, a repository for t...TRUEFALSEFALSESkidmore Collegehttp://www.skidmore.edu/usSaratoga Springs43.0961-73.7818bepressgeoname_2_USotherNaN2015-07-06 17:35:50NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaNcelestial5882NaNNaNNaNNaNNaNNaNNaNNaNNaNNaNNaN
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" ], "text/plain": [ - " full_name short_name \\\n", - "0 GenBank GenBank \n", - "1 GlycoNAVI GlycoNAVI \n", - "2 ADHDgene ADHDgene \n", - "3 Allele frequency resource for research and tea... ALFRED \n", - "4 Animal Transcription Factor Database AnimalTFDB \n", + " rev_number eprint_status userid importid source dir \\\n", + "eprintid \n", + "1 633 archive 1 NaN NaN disk0/00/00/00/01 \n", + "10 511 archive 1 NaN NaN disk0/00/00/00/10 \n", + "1000 274 archive 1 NaN NaN disk0/00/00/10/00 \n", + "10001 20 archive 91 NaN NaN disk0/00/01/00/01 \n", + "10008 11 archive 404 NaN NaN disk0/00/01/00/08 \n", "\n", - " fs_url \\\n", - "0 https://fairsharing.org/10.25504/FAIRsharing.9... \n", - "1 https://fairsharing.org/10.25504/FAIRsharing.w... \n", - "2 https://fairsharing.org/10.25504/FAIRsharing.m... \n", - "3 https://fairsharing.org/10.25504/FAIRsharing.y... \n", - "4 https://fairsharing.org/10.25504/FAIRsharing.e... \n", + " datestamp lastmod status_changed \\\n", + "eprintid \n", + "1 2010-01-06 13:43:48 2011-07-18 05:40:07 2010-01-06 13:43:48 \n", + "10 2010-01-06 13:43:48 2011-07-18 05:40:13 2010-01-06 13:43:48 \n", + "1000 2010-01-06 13:45:01 2011-07-06 08:21:21 2010-01-06 13:45:01 \n", + "10001 2015-08-08 14:52:11 2016-03-21 19:44:01 2015-08-08 14:52:11 \n", + "10008 2015-08-08 14:52:26 2016-03-21 19:43:51 2015-08-08 14:52:26 \n", "\n", - " url \\\n", - "0 https://www.ncbi.nlm.nih.gov/genbank/ \n", - "1 https://glyconavi.org/ \n", - "2 http://adhd.psych.ac.cn/ \n", - "3 http://alfred.med.yale.edu \n", - "4 http://bioinfo.life.hust.edu.cn/AnimalTFDB/ \n", + " type succeeds commentary metadata_visibility latitude \\\n", + "eprintid \n", + "1 subject NaN NaN show NaN \n", + "10 institutional NaN NaN show NaN \n", + "1000 subject NaN NaN show NaN \n", + "10001 subject NaN NaN show NaN \n", + "10008 institutional NaN NaN show NaN \n", "\n", - " countries \\\n", - "0 European Union,Japan,United States \n", - "1 Japan \n", - "2 China \n", - "3 United States \n", - "4 China \n", + " longitude relation_type relation_uri item_issues_id \\\n", + "eprintid \n", + "1 NaN NaN NaN NaN \n", + "10 NaN NaN NaN NaN \n", + "1000 NaN NaN NaN NaN \n", + "10001 NaN NaN NaN NaN \n", + "10008 NaN NaN NaN NaN \n", "\n", - " subjects \n", - "0 Bioinformatics,Data Management,Data Submission... \n", - "1 Chemistry,Glycomics,Life Science,Organic Chemi... \n", - "2 Biomedical Science,Genetics \n", - "3 Life Science \n", - "4 Life Science " + " item_issues_type item_issues_description item_issues_timestamp \\\n", + "eprintid \n", + "1 NaN NaN NaN \n", + "10 NaN NaN NaN \n", + "1000 NaN NaN NaN \n", + "10001 NaN NaN NaN \n", + "10008 NaN NaN NaN \n", + "\n", + " item_issues_status item_issues_reported_by item_issues_resolved_by \\\n", + "eprintid \n", + "1 NaN NaN NaN \n", + "10 NaN NaN NaN \n", + "1000 NaN NaN NaN \n", + "10001 NaN NaN NaN \n", + "10008 NaN NaN NaN \n", + "\n", + " item_issues_comment item_issues_count sword_depositor sword_slug \\\n", + "eprintid \n", + "1 NaN 0 NaN NaN \n", + "10 NaN 0 NaN NaN \n", + "1000 NaN 0 NaN NaN \n", + "10001 NaN NaN NaN NaN \n", + "10008 NaN NaN NaN NaN \n", + "\n", + " exemplar home_page \\\n", + "eprintid \n", + "1 NaN http://archivesic.ccsd.cnrs.fr/ \n", + "10 NaN http://www.diva-portal.org/mdh/ \n", + "1000 NaN http://pam.pisharp.org/ \n", + "10001 NaN http://edoc.sub.uni-hamburg.de/klimawandel/ \n", + "10008 NaN http://creativematter.skidmore.edu/ \n", + "\n", + " title \\\n", + "eprintid \n", + "1 @RCHIVESIC \n", + "10 Academic Archive On-line (Mälardalen Universit... \n", + "1000 PAM - Portuguese Archive of Mathematics \n", + "10001 Klimawandel Dokumentenserver \n", + "10008 Creative Matter | Skidmore College Research \n", + "\n", + " oai_pmh sword_endpoint \\\n", + "eprintid \n", + "1 http://archivesic.ccsd.cnrs.fr/oai/oai.php NaN \n", + "10 http://www.diva-portal.org/oai/mdh/OAI NaN \n", + "1000 NaN NaN \n", + "10001 http://edoc.sub.uni-hamburg.de/klimawandel/oai NaN \n", + "10008 http://creativematter.skidmore.edu/do/oai/ NaN \n", + "\n", + " rss_feed twitter_feed \\\n", + "eprintid \n", + "1 NaN NaN \n", + "10 NaN NaN \n", + "1000 NaN NaN \n", + "10001 NaN NaN \n", + "10008 http://creativematter.skidmore.edu/recent.rss NaN \n", + "\n", + " description fulltext \\\n", + "eprintid \n", + "1 NaN NaN \n", + "10 NaN TRUE \n", + "1000 NaN TRUE \n", + "10001 The \"Documentenserver Klimawandel\" (Repository... TRUE \n", + "10008 Welcome to Creative Matter, a repository for t... TRUE \n", + "\n", + " open_access mandate \\\n", + "eprintid \n", + "1 NaN NaN \n", + "10 TRUE NaN \n", + "1000 TRUE NaN \n", + "10001 TRUE TRUE \n", + "10008 FALSE FALSE \n", + "\n", + " organisation_title \\\n", + "eprintid \n", + "1 NaN \n", + "10 NaN \n", + "1000 NaN \n", + "10001 [KLIMZUG projects, Climate Service Center 2.0,... \n", + "10008 Skidmore College \n", + "\n", + " organisation_home_page location_country \\\n", + "eprintid \n", + "1 NaN fr \n", + "10 NaN se \n", + "1000 NaN pt \n", + "10001 [http://www.climateservicecenter.de/, http://w... de \n", + "10008 http://www.skidmore.edu/ us \n", + "\n", + " location_city location_latitude location_longitude software \\\n", + "eprintid \n", + "1 NaN NaN NaN hal \n", + "10 Uppsala 59.8667 17.6333 diva \n", + "1000 Bellevue, WA 47.6034 -122.155 dspace \n", + "10001 Hamburg 53.5511 9.9937 opus \n", + "10008 Saratoga Springs 43.0961 -73.7818 bepress \n", + "\n", + " geoname version subjects date \\\n", + "eprintid \n", + "1 geoname_2_FR other NaN 2002-05-17 19:24:41 \n", + "10 geoname_2_SE other NaN 2005-12-08 13:15:22 \n", + "1000 geoname_2_PT other NaN 2006-05-04 10:48:14 \n", + "10001 geoname_2_DE other [G1, GF, HD, GE, S1] 2015-07-02 08:08:31 \n", + "10008 geoname_2_US other NaN 2015-07-06 17:35:50 \n", + "\n", + " note suggestions activity_low activity_medium activity_high \\\n", + "eprintid \n", + "1 NaN NaN 0 0 0 \n", + "10 NaN NaN 0 0 0 \n", + "1000 NaN NaN NaN NaN NaN \n", + "10001 NaN NaN NaN NaN NaN \n", + "10008 NaN NaN NaN NaN NaN \n", + "\n", + " recordcount recordhistory \\\n", + "eprintid \n", + "1 25 0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,... \n", + "10 100 0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,8,39,100,100,100... \n", + "1000 NaN NaN \n", + "10001 NaN NaN \n", + "10008 NaN NaN \n", + "\n", + " fulltexts_total fulltexts_docs fulltexts_rtotal fulltexts_rdocs \\\n", + "eprintid \n", + "1 NaN NaN NaN NaN \n", + "10 NaN NaN NaN NaN \n", + "1000 NaN NaN NaN NaN \n", + "10001 NaN NaN NaN NaN \n", + "10008 NaN NaN NaN NaN \n", + "\n", + " registry_name registry_id submit_to submitted_to_name \\\n", + "eprintid \n", + "1 [opendoar, celestial] [58, 669] NaN NaN \n", + "10 [opendoar, celestial] [526, 258] NaN NaN \n", + "1000 NaN NaN NaN NaN \n", + "10001 [opendoar, celestial] [3408, 5881] NaN NaN \n", + "10008 celestial 5882 NaN NaN \n", + "\n", + " submitted_to_done webometrics_rank webometrics_size \\\n", + "eprintid \n", + "1 NaN NaN NaN \n", + "10 NaN NaN NaN \n", + "1000 NaN NaN NaN \n", + "10001 NaN NaN NaN \n", + "10008 NaN NaN NaN \n", + "\n", + " webometrics_visibility webometrics_rich_files webometrics_scholar \\\n", + "eprintid \n", + "1 NaN NaN NaN \n", + "10 NaN NaN NaN \n", + "1000 NaN NaN NaN \n", + "10001 NaN NaN NaN \n", + "10008 NaN NaN NaN \n", + "\n", + " monthly_deposits total_deposits association \n", + "eprintid \n", + "1 NaN NaN NaN \n", + "10 NaN NaN NaN \n", + "1000 NaN NaN NaN \n", + "10001 NaN NaN NaN \n", + "10008 NaN NaN NaN " ] }, - "execution_count": 11, + "execution_count": 9, "metadata": {}, "output_type": "execute_result" } ], "source": [ - "fairsharing_df = pd.read_csv('../data/raw/FAIRsharingDBrec_summary20210304.csv', \n", - " delimiter='|', header=0,\n", - " names=['full_name', 'short_name', 'fs_url', 'url', 'countries', 'subjects'])\n", - "fairsharing_df.head()" + "def value_or_list(cell_set):\n", + " copy = set(cell_set)\n", + " copy.discard(np.nan) \n", + " if len(copy) == 0:\n", + " return np.nan\n", + " if len(copy) == 1:\n", + " return copy.pop()\n", + " return list(copy)\n", + " \n", + "roar_df = roar_df.applymap(value_or_list)\n", + "roar_df.head()" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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"freq 1 3 \n", + " eprintid rev_number eprint_status userid importid source \\\n", + "count 5375 5375 5375 5375 0.0 0.0 \n", + "unique 5375 658 1 2135 NaN NaN \n", + "top 10202 11 archive 1 NaN NaN \n", + "freq 1 332 5375 1333 NaN NaN \n", + "mean NaN NaN NaN NaN NaN NaN \n", + "std NaN NaN NaN NaN NaN NaN \n", + "min NaN NaN NaN NaN NaN NaN \n", + "25% NaN NaN NaN NaN NaN NaN \n", + "50% NaN NaN NaN NaN NaN NaN \n", + "75% NaN NaN NaN NaN NaN NaN \n", + "max NaN NaN NaN NaN NaN NaN \n", "\n", - " fs_url \\\n", - "count 1752 \n", - "unique 1752 \n", - "top https://fairsharing.org/10.25504/FAIRsharing.1... \n", - "freq 1 \n", + " dir datestamp lastmod \\\n", + "count 5375 5375 5375 \n", + "unique 5375 4127 3966 \n", + "top disk0/00/01/46/73 2010-01-06 13:43:48 2011-07-06 08:24:53 \n", + "freq 1 16 8 \n", + "mean NaN NaN NaN \n", + "std NaN NaN NaN \n", + "min NaN NaN NaN \n", + "25% NaN NaN NaN \n", + "50% NaN NaN NaN \n", + "75% NaN NaN NaN \n", + "max NaN NaN NaN \n", "\n", - " url countries subjects \n", - "count 1752 1749 1690 \n", - "unique 1752 178 834 \n", - "top http://www.plexdb.org/ United States Life Science \n", - "freq 1 588 367 " + " status_changed type succeeds commentary \\\n", + "count 5375 5375 107 0.0 \n", + "unique 4158 12 107 NaN \n", + "top 2010-01-06 13:43:48 institutional 10164 NaN \n", + "freq 16 3795 1 NaN \n", + "mean NaN NaN NaN NaN \n", + "std NaN NaN NaN NaN \n", + "min NaN NaN NaN NaN \n", + "25% NaN NaN NaN NaN \n", + "50% NaN NaN NaN NaN \n", + "75% NaN NaN NaN NaN \n", + "max NaN NaN NaN NaN \n", + "\n", + " metadata_visibility latitude longitude relation_type relation_uri \\\n", + "count 5375 0.0 0.0 0.0 0.0 \n", + "unique 2 NaN NaN NaN NaN \n", + "top show NaN NaN NaN NaN \n", + "freq 5334 NaN NaN NaN NaN \n", + "mean NaN NaN NaN NaN NaN \n", + "std NaN NaN NaN NaN NaN \n", + "min NaN NaN NaN NaN NaN \n", + "25% NaN NaN NaN NaN NaN \n", + "50% NaN NaN NaN NaN NaN \n", + "75% NaN NaN NaN NaN NaN \n", + "max NaN NaN NaN NaN NaN \n", + "\n", + " item_issues_id item_issues_type \\\n", + "count 63 63 \n", + "unique 48 5 \n", + "top bad_oai_pmh_url_0 duplicate_title \n", + "freq 15 33 \n", + "mean NaN NaN \n", + "std NaN NaN \n", + "min NaN NaN \n", + "25% NaN NaN \n", + "50% NaN NaN \n", + "75% NaN NaN \n", + "max NaN NaN \n", + "\n", + " item_issues_description \\\n", + "count 63 \n", + "unique 62 \n", + "top Duplicate title to Date: Fri, 23 Jul 2021 12:41:17 +0200 Subject: [PATCH 2/2] each registry has a basic analysis --- notebooks/01.2-exploration-opendoar.ipynb | 1493 ++++++------------ notebooks/01.4-exploration-fairsharing.ipynb | 1103 +------------ 2 files changed, 505 insertions(+), 2091 deletions(-) diff --git a/notebooks/01.2-exploration-opendoar.ipynb b/notebooks/01.2-exploration-opendoar.ipynb index b79a854..dcdad8e 100644 --- a/notebooks/01.2-exploration-opendoar.ipynb +++ b/notebooks/01.2-exploration-opendoar.ipynb @@ -34,13 +34,6 @@ "## Loading datasets" ] }, - { - "cell_type": "markdown", - "metadata": {}, - "source": [ - "**re3data**" - ] - }, { "cell_type": "code", "execution_count": 3, @@ -67,105 +60,206 @@ " \n", " \n", " \n", - " re3data_id\n", + " openaire_id\n", + " opendoar_id\n", " repository_name\n", + " additional_name\n", + " repository_url\n", + " description\n", " type\n", + " update_date\n", + " start_date\n", " subject\n", - " provider_type\n", - " keyword\n", + " content_type\n", " institution\n", + " metadata_policy\n", + " data_policy\n", + " submission_policy\n", + " content_policy\n", + " software\n", + " api\n", " \n", " \n", " \n", " \n", " 0\n", - " r3d100000001\n", - " Odum Institute Archive Dataverse\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", - " [dataProvider]\n", - " [FAIR, Middle East, crime, demography, economy...\n", - " [[Odum Institute for Research in Social Scienc...\n", + " opendoar____::38b3eff8baf56627478ec76a704e9b52\n", + " 101\n", + " utrecht university repository\n", + " []\n", + " http://dspace.library.uu.nl\n", + " this site is a university repository providing...\n", + " institutional\n", + " 2021-04-16 15:22:03\n", + " 2006-01-13 12:55:13\n", + " [multidisciplinary]\n", + " [journal_articles, conference_and_workshop_pap...\n", + " [[university of utrecht, [universiteit utrecht...\n", + " True\n", + " True\n", + " False\n", + " True\n", + " dspace\n", + " true\n", " \n", " \n", " 1\n", - " r3d100000002\n", - " Access to Archival Databases\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 102 History...\n", - " [dataProvider]\n", - " [US History]\n", - " [[The U.S. National Archives and Records Admin...\n", + " opendoar____::2b44928ae11fb9384c4cf38708677c48\n", + " 115\n", + " dspace at indian institute of management kozhi...\n", + " [dspace@iimk]\n", + " http://dspace.iimk.ac.in/\n", + " this site is a subject based university reposi...\n", + " institutional\n", + " 2021-02-18 17:36:43\n", + " 2006-01-04 11:54:34\n", + " [ecology and environment, social sciences gene...\n", + " [journal_articles, conference_and_workshop_pap...\n", + " [[indian institute of management kozhikode, [i...\n", + " True\n", + " True\n", + " True\n", + " True\n", + " dspace 4.1\n", + " true\n", " \n", " \n", " 2\n", - " r3d100000004\n", - " Datenbank Gesprochenes Deutsch\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 104 Linguis...\n", - " [dataProvider, serviceProvider]\n", - " [Australian German, FOLK, German dialects, Pfe...\n", - " [[Institut für Deutsche Sprache, Archiv für Ge...\n", + " opendoar____::3416a75f4cea9109507cacd8e2f2aefc\n", + " 41\n", + " caltech engineering and science online\n", + " []\n", + " http://calteches.library.caltech.edu/\n", + " the caltech archives holds approximately 220 c...\n", + " institutional\n", + " 2021-02-18 17:36:28\n", + " 2006-01-04 14:47:04\n", + " [biology and biochemistry, chemistry and chemi...\n", + " [journal_articles, conference_and_workshop_pap...\n", + " [[california institute of technology, [caltech...\n", + " True\n", + " True\n", + " True\n", + " True\n", + " eprints 3.1.3\n", + " true\n", " \n", " \n", " 3\n", - " r3d100000005\n", - " UNC Dataverse\n", - " [institutional]\n", - " [1 Humanities and Social Sciences, 111 Social ...\n", - " [dataProvider, serviceProvider]\n", - " [FAIR, census, demographic survey, demography,...\n", - " [[Odum Institute for Research in Social Scienc...\n", + " opendoar____::07e1cd7dca89a1678042477183b7ac3f\n", + " 119\n", + " dcu online research access service\n", + " [doras]\n", + " http://doras.dcu.ie/\n", + " this site is an institutional repository provi...\n", + " institutional\n", + " 2021-02-18 17:36:44\n", + " 2006-01-04 11:15:19\n", + " [multidisciplinary]\n", + " [journal_articles, conference_and_workshop_pap...\n", + " [[dublin city university, [dcu], ie, [], , htt...\n", + " True\n", + " True\n", + " True\n", + " True\n", + " eprints 3.0.5\n", + " true\n", " \n", " \n", " 4\n", - " r3d100000006\n", - " Archaeology Data Service\n", - " [disciplinary]\n", - " [1 Humanities and Social Sciences, 101 Ancient...\n", - " [dataProvider, serviceProvider]\n", - " [FAIR, archaeology, cultural heritage, prehist...\n", - " [[Arts and Humanities Research Council, [AHRC]...\n", + " opendoar____::d1f491a404d6854880943e5c3cd9ca25\n", + " 129\n", + " earth-prints repository\n", + " []\n", + " http://www.earth-prints.org/\n", + " a subject based repository providing open acce...\n", + " disciplinary\n", + " 2021-04-19 08:28:38\n", + " 2006-01-30 16:43:11\n", + " [earth and planetary sciences]\n", + " [journal_articles, conference_and_workshop_pap...\n", + " [[istituto nazionale di geofisica e vulcanolog...\n", + " True\n", + " True\n", + " True\n", + " True\n", + " dspace 5.8.1-snapshot\n", + " true\n", " \n", " \n", "\n", "" ], "text/plain": [ - " re3data_id repository_name type \\\n", - "0 r3d100000001 Odum Institute Archive Dataverse [disciplinary] \n", - "1 r3d100000002 Access to Archival Databases [disciplinary] \n", - "2 r3d100000004 Datenbank Gesprochenes Deutsch [disciplinary] \n", - "3 r3d100000005 UNC Dataverse [institutional] \n", - "4 r3d100000006 Archaeology Data Service [disciplinary] \n", + " openaire_id opendoar_id \\\n", + "0 opendoar____::38b3eff8baf56627478ec76a704e9b52 101 \n", + "1 opendoar____::2b44928ae11fb9384c4cf38708677c48 115 \n", + "2 opendoar____::3416a75f4cea9109507cacd8e2f2aefc 41 \n", + "3 opendoar____::07e1cd7dca89a1678042477183b7ac3f 119 \n", + "4 opendoar____::d1f491a404d6854880943e5c3cd9ca25 129 \n", + "\n", + " repository_name additional_name \\\n", + "0 utrecht university repository [] \n", + "1 dspace at indian institute of management kozhi... [dspace@iimk] \n", + "2 caltech engineering and science online [] \n", + "3 dcu online research access service [doras] \n", + "4 earth-prints repository [] \n", + "\n", + " repository_url \\\n", + "0 http://dspace.library.uu.nl \n", + "1 http://dspace.iimk.ac.in/ \n", + "2 http://calteches.library.caltech.edu/ \n", + "3 http://doras.dcu.ie/ \n", + "4 http://www.earth-prints.org/ \n", + "\n", + " description type \\\n", + "0 this site is a university repository providing... institutional \n", + "1 this site is a subject based university reposi... institutional \n", + "2 the caltech archives holds approximately 220 c... institutional \n", + "3 this site is an institutional repository provi... institutional \n", + "4 a subject based repository providing open acce... disciplinary \n", + "\n", + " update_date start_date \\\n", + "0 2021-04-16 15:22:03 2006-01-13 12:55:13 \n", + "1 2021-02-18 17:36:43 2006-01-04 11:54:34 \n", + "2 2021-02-18 17:36:28 2006-01-04 14:47:04 \n", + "3 2021-02-18 17:36:44 2006-01-04 11:15:19 \n", + "4 2021-04-19 08:28:38 2006-01-30 16:43:11 \n", "\n", " subject \\\n", - "0 [1 Humanities and Social Sciences, 111 Social ... \n", - "1 [1 Humanities and Social Sciences, 102 History... \n", - "2 [1 Humanities and Social Sciences, 104 Linguis... \n", - "3 [1 Humanities and Social Sciences, 111 Social ... \n", - "4 [1 Humanities and Social Sciences, 101 Ancient... \n", + "0 [multidisciplinary] \n", + "1 [ecology and environment, social sciences gene... \n", + "2 [biology and biochemistry, chemistry and chemi... \n", + "3 [multidisciplinary] \n", + "4 [earth and planetary sciences] \n", "\n", - " provider_type \\\n", - "0 [dataProvider] \n", - "1 [dataProvider] \n", - "2 [dataProvider, serviceProvider] \n", - "3 [dataProvider, serviceProvider] \n", - "4 [dataProvider, serviceProvider] \n", + " content_type \\\n", + "0 [journal_articles, conference_and_workshop_pap... \n", + "1 [journal_articles, conference_and_workshop_pap... \n", + "2 [journal_articles, conference_and_workshop_pap... \n", + "3 [journal_articles, conference_and_workshop_pap... \n", + "4 [journal_articles, conference_and_workshop_pap... \n", "\n", - " keyword \\\n", - "0 [FAIR, Middle East, crime, demography, economy... \n", - "1 [US History] \n", - "2 [Australian German, FOLK, German dialects, Pfe... \n", - "3 [FAIR, census, demographic survey, demography,... \n", - "4 [FAIR, archaeology, cultural heritage, prehist... \n", + " institution metadata_policy \\\n", + "0 [[university of utrecht, [universiteit utrecht... 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2ADHDgeneADHDgenehttps://fairsharing.org/10.25504/FAIRsharing.m...http://adhd.psych.ac.cn/ChinaBiomedical Science,Genetics
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1r3d100000002Access to Archival Databases[disciplinary][1 Humanities and Social Sciences, 102 History...[dataProvider][US History][[The U.S. National Archives and Records Admin...
2r3d100000004Datenbank Gesprochenes Deutsch[disciplinary][1 Humanities and Social Sciences, 104 Linguis...[dataProvider, serviceProvider][Australian German, FOLK, German dialects, Pfe...[[Institut für Deutsche Sprache, Archiv für Ge...
3r3d100000005UNC Dataverse[institutional][1 Humanities and Social Sciences, 111 Social ...[dataProvider, serviceProvider][FAIR, census, demographic survey, demography,...[[Odum Institute for Research in Social Scienc...
4r3d100000006Archaeology Data Service[disciplinary][1 Humanities and Social Sciences, 101 Ancient...[dataProvider, serviceProvider][FAIR, archaeology, cultural heritage, prehist...[[Arts and Humanities Research Council, [AHRC]...
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