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restructuring the project

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Andrea Mannocci 2022-02-16 15:29:05 +01:00
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{"name": "WDC Sunspot Index and Long-term Solar Observations", "originalId": "3226", "websiteurl": "http://sidc.be/silso/home", "collectedfrom": "FAIRsharing", "alternativeNames": ["WDC-SILSO"], "id": "https://fairsharing.org/10.25504/FAIRsharing.d6423b"}
{"name": "Biological Magnetic Resonance Data Bank", "originalId": "2114", "websiteurl": "https://bmrb.io/", "collectedfrom": "FAIRsharing", "alternativeNames": ["BMRB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.p06nme"}
{"name": "Fisheries and Oceans Canada Pacific Region Data Archive", "originalId": "3022", "websiteurl": "http://www.pac.dfo-mpo.gc.ca/science/oceans/data-donnees/index-eng.html", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.8b7a2f"}
{"name": "Climate Prediction Center", "originalId": "2998", "websiteurl": "https://www.cpc.ncep.noaa.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CPC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.e08886"}
{"name": "Acytostelium Gene Database", "originalId": "2301", "websiteurl": "http://cosmos.bot.kyoto-u.ac.jp/acytodb//cgi-bin/index.cgi?org=as", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.meh9wz"}
{"name": "Geochron", "originalId": "3237", "websiteurl": "https://www.geochron.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Geochron"], "id": "https://fairsharing.org/fairsharing_records/3237"}
{"name": "Taiwan Biodiversity Information Facility IPT - GBIF Taiwan", "originalId": "2475", "websiteurl": "http://ipt.taibif.tw/", "collectedfrom": "FAIRsharing", "alternativeNames": ["TaiBIF IPT - GBIF Taiwan"], "id": "https://fairsharing.org/10.25504/FAIRsharing.y2vm4r"}
{"name": "Germplasm Resources Information Network", "originalId": "2078", "websiteurl": "https://www.ars-grin.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GRIN"], "id": "https://fairsharing.org/10.25504/FAIRsharing.3axym7"}
{"name": "meereisportal.de Data Portal", "originalId": "3149", "websiteurl": "https://data.seaiceportal.de", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.bf65d9"}
{"name": "Nottingham Arabidopsis Stock Centre Seeds Database", "originalId": "1740", "websiteurl": "http://arabidopsis.info", "collectedfrom": "FAIRsharing", "alternativeNames": ["NASC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2sqcxs"}
{"name": "IsoArcH database", "originalId": "3319", "websiteurl": "https://isoarch.eu/", "collectedfrom": "FAIRsharing", "alternativeNames": ["IsoArcH"], "id": "https://fairsharing.org/fairsharing_records/3319"}
{"name": "Chile National Health Survey 2009-2010", "originalId": "2457", "websiteurl": "http://epi.minsal.cl/bases-de-datos/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Chile NHS 2009"], "id": "https://fairsharing.org/10.25504/FAIRsharing.6hb7c1"}
{"name": "Global Project Management System Tuberculosis Transportal", "originalId": "2881", "websiteurl": "https://tbindia.indiancst.com/GPMSTBTransportal/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GPMS TB Transportal"], "id": "https://fairsharing.org/10.25504/FAIRsharing.4APEVR"}
{"name": "Chinese National Arctic and Antarctic Data Center", "originalId": "2810", "websiteurl": "https://www.chinare.org.cn/en/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/fairsharing_records/2810"}
{"name": "Brainbase", "originalId": "2659", "websiteurl": "https://brainbase.io", "collectedfrom": "FAIRsharing", "alternativeNames": ["Brainbase"], "id": "https://fairsharing.org/10.25504/FAIRsharing.Zz0lIi"}
{"name": "Ocean Biodiversity Information System", "originalId": "2294", "websiteurl": "https://obis.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["OBIS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.3rv9m8"}
{"name": "Canadian Open Neuroscience Platform (CONP) Portal", "originalId": "3245", "websiteurl": "https://portal.conp.ca", "collectedfrom": "FAIRsharing", "alternativeNames": ["CONP Portal"], "id": "https://fairsharing.org/10.25504/FAIRsharing.7qwrhY"}
{"name": "AErosol RObotic NETwork", "originalId": "3170", "websiteurl": "https://aeronet.gsfc.nasa.gov/new_web/data.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["AERONET"], "id": "https://fairsharing.org/fairsharing_records/3170"}
{"name": "Arch", "originalId": "3672", "websiteurl": "https://arch.library.northwestern.edu/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/fairsharing_records/3672"}
{"name": "The Cardiovascular Research Grid", "originalId": "2012", "websiteurl": "https://www.cvrgrid.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CVRG"], "id": "https://fairsharing.org/10.25504/FAIRsharing.x80z26"}
{"name": "Code Ocean", "originalId": "2548", "websiteurl": "https://codeocean.com", "collectedfrom": "FAIRsharing", "alternativeNames": ["CO"], "id": "https://fairsharing.org/10.25504/FAIRsharing.thskvr"}
{"name": "NASA Goddard Earth Sciences Data and Information Services Center", "originalId": "2495", "websiteurl": "https://disc.gsfc.nasa.gov", "collectedfrom": "FAIRsharing", "alternativeNames": ["GES DISC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.7388wt"}
{"name": "Metabolonote", "originalId": "2615", "websiteurl": "http://metabolonote.kazusa.or.jp", "collectedfrom": "FAIRsharing", "alternativeNames": ["Metabolonote"], "id": "https://fairsharing.org/10.25504/FAIRsharing.d8fea5"}
{"name": "GenBank", "originalId": "1547", "websiteurl": "https://www.ncbi.nlm.nih.gov/genbank/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GenBank"], "id": "https://fairsharing.org/10.25504/FAIRsharing.9kahy4"}
{"name": "NIST Atomic Spectra Database", "originalId": "2621", "websiteurl": "https://www.nist.gov/pml/atomic-spectra-database", "collectedfrom": "FAIRsharing", "alternativeNames": ["ASD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.401958"}
{"name": "The Track Hub Registry", "originalId": "2736", "websiteurl": "https://www.trackhubregistry.org/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.a1de61"}
{"name": "DRSC Functional Genomics Resources", "originalId": "1583", "websiteurl": "http://www.flyrnai.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["DRSC-FGR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.sbnhkq"}
{"name": "Human Genetic Variation Database", "originalId": "2742", "websiteurl": "http://www.hgvd.genome.med.kyoto-u.ac.jp/", "collectedfrom": "FAIRsharing", "alternativeNames": ["HGVD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.c7edd8"}
{"name": "Functional ANnoTation Of the Mammalian genome Database", "originalId": "2788", "websiteurl": "https://fantom.gsc.riken.jp/", "collectedfrom": "FAIRsharing", "alternativeNames": ["FANTOM5"], "id": "https://fairsharing.org/10.25504/FAIRsharing.99c9b0"}
{"name": "Level-1 and Atmosphere Archive & Distribution System", "originalId": "3056", "websiteurl": "https://ladsweb.modaps.eosdis.nasa.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["LAADS DAAC"], "id": "https://fairsharing.org/fairsharing_records/3056"}
{"name": "Research Data Leeds Repository", "originalId": "3157", "websiteurl": "http://archive.researchdata.leeds.ac.uk/", "collectedfrom": "FAIRsharing", "alternativeNames": ["RDL"], "id": "https://fairsharing.org/10.25504/FAIRsharing.nhVgNw"}
{"name": "Primate Cell Type Database", "originalId": "2879", "websiteurl": "https://primatedatabase.com/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PCTD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.7IQk4a"}
{"name": "Discovery VIRUS COVID-19 Registry", "originalId": "3250", "websiteurl": "https://www.sccm.org/Research/Research/Discovery-Research-Network/VIRUS-COVID-19-Registry", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.ogTCME"}
{"name": "real-time quantitative PCR Primer Database", "originalId": "2499", "websiteurl": "http://biodb.swu.edu.cn/qprimerdb/", "collectedfrom": "FAIRsharing", "alternativeNames": ["qPrimerDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.qy4b7s"}
{"name": "Citrination", "originalId": "2538", "websiteurl": "https://citrination.com/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Citrination"], "id": "https://fairsharing.org/10.25504/FAIRsharing.x6y19r"}
{"name": "Dryad", "originalId": "1998", "websiteurl": "http://datadryad.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Dryad"], "id": "https://fairsharing.org/10.25504/FAIRsharing.wkggtx"}
{"name": "Genomic Observatories Meta-Database", "originalId": "3019", "websiteurl": "https://geome-db.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GEOME"], "id": "https://fairsharing.org/10.25504/FAIRsharing.wOcTaM"}
{"name": "Food and Agriculture Microdata Catalogue", "originalId": "2892", "websiteurl": "https://microdata.fao.org/index.php/catalog", "collectedfrom": "FAIRsharing", "alternativeNames": ["FAM"], "id": "https://fairsharing.org/10.25504/FAIRsharing.8b493b"}
{"name": "Database of Somatic Mutations in Normal Cells", "originalId": "2893", "websiteurl": "http://dsmnc.big.ac.cn/", "collectedfrom": "FAIRsharing", "alternativeNames": ["DSMNC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.05e1a4"}
{"name": "Plant Natural Antisense Transcripts Database", "originalId": "1629", "websiteurl": "http://bis.zju.edu.cn/pnatdb/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PlantNATsDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.rn1pxg"}
{"name": "Global Terrestrial Network for Permafrost - Database", "originalId": "3114", "websiteurl": "http://gtnpdatabase.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GTN-P"], "id": "https://fairsharing.org/10.25504/FAIRsharing.44a554"}
{"name": "GERDA", "originalId": "3115", "websiteurl": "https://eng.geus.dk/products-services-facilities/data-and-maps/national-geophysical-database-gerda/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GERDA"], "id": "https://fairsharing.org/10.25504/FAIRsharing.893fc2"}
{"name": "Global Monitoring Laboratory Data Finder and Viewer", "originalId": "3131", "websiteurl": "https://esrl.noaa.gov/gmd/dv/data/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GML Data Finder and Viewer"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2877fa"}
{"name": "Climate Data Online", "originalId": "3138", "websiteurl": "https://www.ncdc.noaa.gov/cdo-web/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CDO"], "id": "https://fairsharing.org/10.25504/FAIRsharing.a00142"}
{"name": "Coral Reef Information System", "originalId": "3140", "websiteurl": "https://www.coris.noaa.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CoRIS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.ed5b45"}
{"name": "Allele frequency resource for research and teaching", "originalId": "1550", "websiteurl": "https://alfred.med.yale.edu/alfred/index.asp", "collectedfrom": "FAIRsharing", "alternativeNames": ["ALFRED"], "id": "https://fairsharing.org/10.25504/FAIRsharing.y2yct1"}
{"name": "Protein Circular Dichroism Data Bank", "originalId": "2142", "websiteurl": "http://pcddb.cryst.bbk.ac.uk", "collectedfrom": "FAIRsharing", "alternativeNames": ["PCDDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.65yfxp"}
{"name": "DDBJ Biosample", "originalId": "3011", "websiteurl": "https://www.ddbj.nig.ac.jp/biosample/index-e.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["DDBJ Biosample"], "id": "https://fairsharing.org/10.25504/FAIRsharing.20f490"}
{"name": "Bitbucket", "originalId": "3275", "websiteurl": "https://bitbucket.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Bitbucket"], "id": "https://fairsharing.org/10.25504/FAIRsharing.fc3431"}
{"name": "Atlas of Living Australia", "originalId": "3258", "websiteurl": "https://www.ala.org.au/", "collectedfrom": "FAIRsharing", "alternativeNames": ["ALA"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2f66da"}
{"name": "GitLab", "originalId": "3277", "websiteurl": "https://about.gitlab.com/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GitLab"], "id": "https://fairsharing.org/10.25504/FAIRsharing.530e61"}
{"name": "SourceForge", "originalId": "3278", "websiteurl": "https://sourceforge.net/", "collectedfrom": "FAIRsharing", "alternativeNames": ["SourceForge"], "id": "https://fairsharing.org/10.25504/FAIRsharing.b138b5"}
{"name": "Launchpad", "originalId": "3279", "websiteurl": "https://launchpad.net", "collectedfrom": "FAIRsharing", "alternativeNames": ["Launchpad"], "id": "https://fairsharing.org/10.25504/FAIRsharing.a2ba05"}
{"name": "Allen Brain Map Data Catalog", "originalId": "3687", "websiteurl": "https://knowledge.brain-map.org/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.618298"}
{"name": "Iowa State University's DataShare", "originalId": "2861", "websiteurl": "https://iastate.figshare.com/", "collectedfrom": "FAIRsharing", "alternativeNames": ["ISU DataShare"], "id": "https://fairsharing.org/10.25504/FAIRsharing.yOKiQs"}
{"name": "Savannah", "originalId": "3266", "websiteurl": "http://savannah.gnu.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Savannah"], "id": "https://fairsharing.org/10.25504/FAIRsharing.3f074b"}
{"name": "Neuroimaging Informatics Tools and Resources Collaboratory Image Repository", "originalId": "3290", "websiteurl": "https://www.nitrc.org/xnat/index.php", "collectedfrom": "FAIRsharing", "alternativeNames": ["NITRC-IR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.a9cfbf"}
{"name": "StellaBase", "originalId": "1785", "websiteurl": "http://stellabase.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["StellaBase"], "id": "https://fairsharing.org/10.25504/FAIRsharing.72qwj0"}
{"name": "LCI facility data repository", "originalId": "2321", "websiteurl": "http://ki.se/en/bionut/welcome-to-the-lci-facility", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.erhnxs"}
{"name": "FAIR4Health Metadata", "originalId": "3617", "websiteurl": "https://www.fair4health.eu/", "collectedfrom": "FAIRsharing", "alternativeNames": ["F4H-Metadata"], "id": "https://fairsharing.org/fairsharing_records/3617"}
{"name": "CESSDA Data Catalogue", "originalId": "3325", "websiteurl": "https://datacatalogue.cessda.eu/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CESSDA DC"], "id": "https://fairsharing.org/fairsharing_records/3325"}
{"name": "Paired Omics Data Platform", "originalId": "3306", "websiteurl": "https://pairedomicsdata.bioinformatics.nl/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PoDP"], "id": "https://fairsharing.org/10.25504/FAIRsharing.9289d4"}
{"name": "Nematode Expression Pattern DataBase", "originalId": "2000", "websiteurl": "http://nematode.lab.nig.ac.jp/", "collectedfrom": "FAIRsharing", "alternativeNames": ["NextDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.xz5m1a"}
{"name": "University of Hong Kong DataHub", "originalId": "3173", "websiteurl": "https://datahub.hku.hk", "collectedfrom": "FAIRsharing", "alternativeNames": ["HKU DataHub"], "id": "https://fairsharing.org/10.25504/FAIRsharing.rafti9"}
{"name": "Data and Service Center for the Humanities", "originalId": "3311", "websiteurl": "https://meta.dasch.swiss/", "collectedfrom": "FAIRsharing", "alternativeNames": ["DaSCH"], "id": "https://fairsharing.org/10.25504/FAIRsharing.095469"}
{"name": "Advanced Spaceborne Thermal Emission and Reflection Radiometer", "originalId": "2797", "websiteurl": "https://asterweb.jpl.nasa.gov", "collectedfrom": "FAIRsharing", "alternativeNames": ["ASTER Data"], "id": "https://fairsharing.org/10.25504/FAIRsharing.00dfd8"}
{"name": "BioImage Archive", "originalId": "2830", "websiteurl": "https://www.ebi.ac.uk/bioimage-archive/", "collectedfrom": "FAIRsharing", "alternativeNames": ["BioImage Archive"], "id": "https://fairsharing.org/10.25504/FAIRsharing.x38D2k"}
{"name": "OmicsDB", "originalId": "2292", "websiteurl": "https://github.com/KeironO/omicsdb", "collectedfrom": "FAIRsharing", "alternativeNames": ["ODB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.1v4zw7"}
{"name": "TARKI Data Archive", "originalId": "3341", "websiteurl": "https://adatbank.tarki.hu/en/", "collectedfrom": "FAIRsharing", "alternativeNames": ["TARKI"], "id": "https://fairsharing.org/10.25504/FAIRsharing.d14d9f"}
{"name": "Comprehensive R Archive Network", "originalId": "2855", "websiteurl": "https://cran.r-project.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CRAN"], "id": "https://fairsharing.org/10.25504/FAIRsharing.1a283d"}
{"name": "Balearic Islands Coastal Observing and Forecasting System Data Repository", "originalId": "3342", "websiteurl": "http://apps.socib.es/data-catalog/", "collectedfrom": "FAIRsharing", "alternativeNames": ["SOCIB Data Repository"], "id": "https://fairsharing.org/10.25504/FAIRsharing.be094e"}
{"name": "Alternaria Genomes Database", "originalId": "2643", "websiteurl": "http://alternaria.vbi.vt.edu/index.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["AGD"], "id": "https://fairsharing.org/fairsharing_records/2643"}
{"name": "Microbial Database for Activated Sludge", "originalId": "3657", "websiteurl": "https://midasfieldguide.org/guide", "collectedfrom": "FAIRsharing", "alternativeNames": ["MiDAS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.b1716a"}
{"name": "The Troms\u00f8 Repository of Language and Linguistics", "originalId": "2929", "websiteurl": "https://trolling.uit.no/", "collectedfrom": "FAIRsharing", "alternativeNames": ["TROLLing"], "id": "https://fairsharing.org/10.25504/FAIRsharing.JGEjCW"}
{"name": "COVID-19 Data Portal", "originalId": "2934", "websiteurl": "https://www.covid19dataportal.org", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.f3b7a9"}
{"name": "GISAID EpiCoV\u2122 Database", "originalId": "2938", "websiteurl": "https://db.cngb.org/gisaid/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.ba6a09"}
{"name": "Stanford HIV Drug Resistance Database", "originalId": "2945", "websiteurl": "https://hivdb.stanford.edu/", "collectedfrom": "FAIRsharing", "alternativeNames": ["HIVDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.41737c"}
{"name": "Civic Learning, Engagement, and Action Data Sharing\tC", "originalId": "3199", "websiteurl": "https://www.icpsr.umich.edu/web/pages/civicleads/index.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["CivicLEADS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.aFsZlL"}
{"name": "European Centre for Disease Prevention and Control", "originalId": "2950", "websiteurl": "https://www.ecdc.europa.eu/en", "collectedfrom": "FAIRsharing", "alternativeNames": ["ECDC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.7ceb60"}
{"name": "Translational Data Catalog", "originalId": "3655", "websiteurl": "https://datacatalog.elixir-luxembourg.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["IMI Data Catalog"], "id": "https://fairsharing.org/10.25504/FAIRsharing.de533c"}
{"name": "National Pollutant Release Inventory", "originalId": "2970", "websiteurl": "https://www.canada.ca/en/services/environment/pollution-waste-management/national-pollutant-release-inventory.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["NPRI"], "id": "https://fairsharing.org/10.25504/FAIRsharing.f14e0b"}
{"name": "United States Department of Agriculture Economics, Statistics and Market Information System", "originalId": "2995", "websiteurl": "https://usda.library.cornell.edu/", "collectedfrom": "FAIRsharing", "alternativeNames": ["USDA ESMIS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.88b8d1"}
{"name": "World Ocean Database", "originalId": "3008", "websiteurl": "https://www.nodc.noaa.gov/OC5/WOD/pr_wod.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["WOD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.73ea53"}
{"name": "PAZAR", "originalId": "2032", "websiteurl": "http://www.pazar.info/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PAZAR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.33yggg"}
{"name": "protocols.io", "originalId": "3758", "websiteurl": "https://protocols.io/welcome", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/fairsharing_records/3758"}
{"name": "Scholars' Bank", "originalId": "3033", "websiteurl": "https://scholarsbank.uoregon.edu/xmlui/", "collectedfrom": "FAIRsharing", "alternativeNames": ["Scholar's Bank"], "id": "https://fairsharing.org/10.25504/FAIRsharing.86123d"}
{"name": "SeaWiFS Bio-optical Archive and Storage System", "originalId": "3034", "websiteurl": "https://seabass.gsfc.nasa.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["SeaBASS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.f384c3"}
{"name": "Atmospheric Science Data Center", "originalId": "3049", "websiteurl": "https://asdc.larc.nasa.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["ASDC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.d9d234"}
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{"name": "Human-Transcriptome Database for Alternative Splicing", "originalId": "1782", "websiteurl": "http://h-invitational.jp/h-dbas/", "collectedfrom": "FAIRsharing", "alternativeNames": ["H-DBAS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.mcrd3t"}
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@ -1,893 +0,0 @@
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{"name": "Mutual Folding Induced by Binding Database", "originalId": "2520", "websiteurl": "http://mfib.enzim.ttk.mta.hu", "collectedfrom": "FAIRsharing", "alternativeNames": ["MFIB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.bwswdf"}
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{"name": "Non-Ribosomal Peptides Database", "originalId": "1774", "websiteurl": "https://bioinfo.cristal.univ-lille.fr/norine", "collectedfrom": "FAIRsharing", "alternativeNames": ["NORINE"], "id": "https://fairsharing.org/10.25504/FAIRsharing.gf8yhy"}
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{"name": "IUPHAR/BPS Guide to PHARMACOLOGY", "originalId": "1933", "websiteurl": "https://www.guidetopharmacology.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["Guide to Pharmacology"], "id": "https://fairsharing.org/10.25504/FAIRsharing.f1dv0"}
{"name": "Translocatome", "originalId": "2689", "websiteurl": "http://translocatome.linkgroup.hu", "collectedfrom": "FAIRsharing", "alternativeNames": ["Translocatome"], "id": "https://fairsharing.org/10.25504/FAIRsharing.FL1LNB"}
{"name": "IDSM", "originalId": "2388", "websiteurl": "https://www.elixir-europe.org/services/database/idsm", "collectedfrom": "FAIRsharing", "alternativeNames": ["IDSM"], "id": "https://fairsharing.org/10.25504/FAIRsharing.nn9r0d"}
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{"name": "Database of small human non-coding RNAs", "originalId": "2248", "websiteurl": "http://lisanwanglab.org/DASHR", "collectedfrom": "FAIRsharing", "alternativeNames": ["DASHR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.ztvs34"}
{"name": "RNA Binding Protein Variant Database", "originalId": "2288", "websiteurl": "http://www.rbp-var.biols.ac.cn/", "collectedfrom": "FAIRsharing", "alternativeNames": ["RBP-Var"], "id": "https://fairsharing.org/10.25504/FAIRsharing.tx8cgr"}
{"name": "National Biodiversity Network Atlas", "originalId": "2818", "websiteurl": "https://nbnatlas.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["NBN Atlas"], "id": "https://fairsharing.org/10.25504/FAIRsharing.p7YFEc"}
{"name": "Collaborative Climate Community Data and Processing Grid", "originalId": "3030", "websiteurl": "https://portal.enes.org/c3web", "collectedfrom": "FAIRsharing", "alternativeNames": ["C3Grid"], "id": "https://fairsharing.org/fairsharing_records/3030"}
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{"name": "Side Effect Resource", "originalId": "1876", "websiteurl": "http://sideeffects.embl.de", "collectedfrom": "FAIRsharing", "alternativeNames": ["SIDER"], "id": "https://fairsharing.org/10.25504/FAIRsharing.zzaykv"}
{"name": "NCBI Cancer Chromosome Database", "originalId": "1965", "websiteurl": "http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cancerchromosomes", "collectedfrom": "FAIRsharing", "alternativeNames": ["Cancer Chromosomes"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2cyh1h"}
{"name": "Human Gene Database", "originalId": "2123", "websiteurl": "https://www.genecards.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GeneCards"], "id": "https://fairsharing.org/10.25504/FAIRsharing.g7jbvn"}
{"name": "Virtual Fly Brain", "originalId": "2374", "websiteurl": "https://virtualflybrain.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["VFB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.nzaz6z"}
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{"name": "IRESite", "originalId": "1820", "websiteurl": "http://www.iresite.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["IRESite"], "id": "https://fairsharing.org/10.25504/FAIRsharing.kd39j4"}
{"name": "Yeast Searching for Transcriptional Regulators and Consensus Tracking", "originalId": "1943", "websiteurl": "http://www.yeastract.com", "collectedfrom": "FAIRsharing", "alternativeNames": ["YEASTRACT"], "id": "https://fairsharing.org/10.25504/FAIRsharing.mphj4z"}
{"name": "4DNucleome Data Portal", "originalId": "2771", "websiteurl": "https://data.4dnucleome.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["4DN"], "id": "https://fairsharing.org/10.25504/FAIRsharing.CugtbQ"}
{"name": "iProX", "originalId": "2834", "websiteurl": "https://www.iprox.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["iProX"], "id": "https://fairsharing.org/10.25504/FAIRsharing.4Sj3vE"}
{"name": "Integrated Marine Information System", "originalId": "3097", "websiteurl": "http://www.vliz.be/en/integrated-marine-information-system", "collectedfrom": "FAIRsharing", "alternativeNames": ["IMIS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.48ZQkn"}
{"name": "Interferome", "originalId": "2229", "websiteurl": "http://www.interferome.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["Interferome"], "id": "https://fairsharing.org/10.25504/FAIRsharing.pp67qc"}
{"name": "VDJdb: a curated database of T-cell receptors with known antigen specificity", "originalId": "2514", "websiteurl": "https://vdjdb.cdr3.net", "collectedfrom": "FAIRsharing", "alternativeNames": ["VDJdb"], "id": "https://fairsharing.org/10.25504/FAIRsharing.nwz68"}
{"name": "Pathogen Host Interactions", "originalId": "1760", "websiteurl": "http://www.phi-base.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PHI-base"], "id": "https://fairsharing.org/10.25504/FAIRsharing.73cqdk"}
{"name": "CaltechDATA", "originalId": "2672", "websiteurl": "https://data.caltech.edu", "collectedfrom": "FAIRsharing", "alternativeNames": ["CaltechDATA"], "id": "https://fairsharing.org/10.25504/FAIRsharing.S09se7"}
{"name": "Legume Information System", "originalId": "2579", "websiteurl": "https://legumeinfo.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["LIS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.BZKHEH"}
{"name": "Small Molecule Pathway Database", "originalId": "1887", "websiteurl": "http://www.smpdb.ca/", "collectedfrom": "FAIRsharing", "alternativeNames": ["SMPDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.y1zyaq"}
{"name": "TreeGenes", "originalId": "2594", "websiteurl": "https://treegenesdb.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["TreeGenes"], "id": "https://fairsharing.org/10.25504/FAIRsharing.lCVfCv"}
{"name": "ProteomicsDB", "originalId": "2518", "websiteurl": "https://www.proteomicsdb.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PrDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.6y9h91"}
{"name": "Metabolomics Workbench", "originalId": "2206", "websiteurl": "https://www.metabolomicsworkbench.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["MW"], "id": "https://fairsharing.org/10.25504/FAIRsharing.xfrgsf"}
{"name": "Archive of Data on Disability to Enable Policy and research", "originalId": "3057", "websiteurl": "https://www.icpsr.umich.edu/web/pages/ADDEP/index.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["ADDEP"], "id": "https://fairsharing.org/10.25504/FAIRsharing.wmB5Os"}
{"name": "The Chemical Probes Portal", "originalId": "2334", "websiteurl": "http://www.chemicalprobes.org", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.yrkkbt"}
{"name": "Hardwood Genomics Project", "originalId": "2439", "websiteurl": "http://www.hardwoodgenomics.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["HWG"], "id": "https://fairsharing.org/10.25504/FAIRsharing.srgkaf"}
{"name": "Hymenoptera Genome Database", "originalId": "2733", "websiteurl": "http://hymenopteragenome.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["HGD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.250fc8"}
{"name": "Environmental Data Portal", "originalId": "2683", "websiteurl": "https://www.envidat.ch/", "collectedfrom": "FAIRsharing", "alternativeNames": ["EnviDat"], "id": "https://fairsharing.org/10.25504/FAIRsharing.0VV4KB"}
{"name": "EBRAINS", "originalId": "2975", "websiteurl": "https://ebrains.eu", "collectedfrom": "FAIRsharing", "alternativeNames": ["EBRAINS"], "id": "https://fairsharing.org/10.25504/FAIRsharing.XO6ppp"}
{"name": "PseudoBase", "originalId": "2098", "websiteurl": "http://www.ekevanbatenburg.nl/pb", "collectedfrom": "FAIRsharing", "alternativeNames": ["PseudoBase"], "id": "https://fairsharing.org/10.25504/FAIRsharing.5ey5w6"}
{"name": "euL1db, the European database of L1-HS retrotransposon insertions in humans", "originalId": "2172", "websiteurl": "http://eul1db.unice.fr", "collectedfrom": "FAIRsharing", "alternativeNames": ["euL1db"], "id": "https://fairsharing.org/10.25504/FAIRsharing.ekrvbq"}
{"name": "The human DEPhOsphorylation Database", "originalId": "2178", "websiteurl": "http://www.depod.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["DEPOD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.q9j2e3"}
{"name": "Finnish Social Science Data Archive", "originalId": "2997", "websiteurl": "https://www.fsd.tuni.fi", "collectedfrom": "FAIRsharing", "alternativeNames": ["FSD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2okP6D"}
{"name": "RCSB Protein Data Bank", "originalId": "2044", "websiteurl": "https://www.rcsb.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["RCSB PDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2t35ja"}
{"name": "CollecTF", "originalId": "2144", "websiteurl": "http://collectf.umbc.edu", "collectedfrom": "FAIRsharing", "alternativeNames": ["CollecTF"], "id": "https://fairsharing.org/10.25504/FAIRsharing.g2cf4x"}
{"name": "MGI Mouse Gene Expression Database", "originalId": "2185", "websiteurl": "http://www.informatics.jax.org/expression.shtml", "collectedfrom": "FAIRsharing", "alternativeNames": ["GXD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.q9neh8"}
{"name": "Virus Pathogen Database and Analysis Resource", "originalId": "1697", "websiteurl": "http://www.viprbrc.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["ViPR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2qx8n8"}
{"name": "International Mouse Phenotyping Consortium", "originalId": "2977", "websiteurl": "https://www.mousephenotype.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["IMPC"], "id": "https://fairsharing.org/10.25504/FAIRsharing.LdoU1I"}
{"name": "Quantitative Trait Loci Archive", "originalId": "2023", "websiteurl": "http://phenome.jax.org/db/q?rtn=qtl/home", "collectedfrom": "FAIRsharing", "alternativeNames": ["QTL Archive"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2g4cfa"}
{"name": "Restriction enzymes and methylases database", "originalId": "2009", "websiteurl": "http://rebase.neb.com", "collectedfrom": "FAIRsharing", "alternativeNames": ["REBASE"], "id": "https://fairsharing.org/10.25504/FAIRsharing.9sb9qh"}
{"name": "HealthData.gov", "originalId": "2246", "websiteurl": "https://www.healthdata.gov/", "collectedfrom": "FAIRsharing", "alternativeNames": ["HealthData.gov"], "id": "https://fairsharing.org/10.25504/FAIRsharing.kcpnmb"}
{"name": "Ascidian Network for In Situ Expression and Embryological Data", "originalId": "2278", "websiteurl": "https://www.aniseed.cnrs.fr/", "collectedfrom": "FAIRsharing", "alternativeNames": ["ANISEED"], "id": "https://fairsharing.org/10.25504/FAIRsharing.xp1x9c"}
{"name": "Mouse Phenome Database", "originalId": "1616", "websiteurl": "http://phenome.jax.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["MPD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.h6enr1"}
{"name": "coastMap", "originalId": "2812", "websiteurl": "https://www.hzg.de/institutes_platforms/coastmap/index.php.en", "collectedfrom": "FAIRsharing", "alternativeNames": ["coastMap"], "id": "https://fairsharing.org/10.25504/FAIRsharing.278768"}
{"name": "Database of Genomic Variants Archive", "originalId": "2156", "websiteurl": "http://www.ebi.ac.uk/dgva/", "collectedfrom": "FAIRsharing", "alternativeNames": ["DGVa"], "id": "https://fairsharing.org/10.25504/FAIRsharing.txkh36"}
{"name": "Refractive Index Database", "originalId": "2655", "websiteurl": "https://refractiveindex.info", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.60127f"}
{"name": "NanoCommons Knowledge Base", "originalId": "2979", "websiteurl": "https://www.nanocommons.eu/nanocommons-knowledge-base/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/fairsharing_records/2979"}
{"name": "Norwegian Centre for Research Data", "originalId": "2597", "websiteurl": "https://nsd.no/en/", "collectedfrom": "FAIRsharing", "alternativeNames": ["NSD"], "id": "https://fairsharing.org/10.25504/FAIRsharing.mKDii0"}
{"name": "VertNet", "originalId": "2190", "websiteurl": "http://www.vertnet.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["VertNet"], "id": "https://fairsharing.org/10.25504/FAIRsharing.ctdss6"}
{"name": "Phytozome", "originalId": "2734", "websiteurl": "https://phytozome.jgi.doe.gov/pz/portal.html", "collectedfrom": "FAIRsharing", "alternativeNames": ["Phytozome"], "id": "https://fairsharing.org/fairsharing_records/2734"}
{"name": "PeanutBase", "originalId": "2581", "websiteurl": "https://peanutbase.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["PeanutBase"], "id": "https://fairsharing.org/10.25504/FAIRsharing.fYFurb"}
{"name": "Drug Target Commons", "originalId": "3316", "websiteurl": "http://www.drugtargetcommons.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["DTC"], "id": "https://fairsharing.org/fairsharing_records/3316"}
{"name": "Protein Data Bank in Europe - Knowledge Base", "originalId": "2775", "websiteurl": "http://pdbe-kb.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["PDBe-KB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.sFzdV7"}
{"name": "Kyoto Encyclopedia of Genes and Genomes", "originalId": "2189", "websiteurl": "http://www.genome.jp/kegg/", "collectedfrom": "FAIRsharing", "alternativeNames": ["KEGG"], "id": "https://fairsharing.org/10.25504/FAIRsharing.327nbg"}
{"name": "PomBase", "originalId": "1683", "websiteurl": "http://www.pombase.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["PomBase"], "id": "https://fairsharing.org/10.25504/FAIRsharing.8jsya3"}
{"name": "Information system for G protein-coupled receptors", "originalId": "1832", "websiteurl": "http://gpcrdb.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GPCRdb"], "id": "https://fairsharing.org/10.25504/FAIRsharing.e4n3an"}
{"name": "Protein Data Bank Japan", "originalId": "2031", "websiteurl": "http://www.pdbj.org/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.rs2815"}
{"name": "LNCipedia", "originalId": "2647", "websiteurl": "https://lncipedia.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["LNCipedia"], "id": "https://fairsharing.org/10.25504/FAIRsharing.84c1a7"}
{"name": "Maize Genetics and Genomics Database", "originalId": "1948", "websiteurl": "https://www.maizegdb.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["MaizeGDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.aq280w"}
{"name": "Omics Discovery Index", "originalId": "2519", "websiteurl": "http://www.omicsdi.org/home", "collectedfrom": "FAIRsharing", "alternativeNames": ["OmicsDI"], "id": "https://fairsharing.org/10.25504/FAIRsharing.re1278"}
{"name": "Cell Centered Database", "originalId": "2020", "websiteurl": "http://ccdb.ucsd.edu/home", "collectedfrom": "FAIRsharing", "alternativeNames": ["CCDB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.t5ha5j"}
{"name": "World-2DPAGE Repository", "originalId": "2063", "websiteurl": "https://world-2dpage.expasy.org/repository/", "collectedfrom": "FAIRsharing", "alternativeNames": ["World-2DPAGE"], "id": "https://fairsharing.org/10.25504/FAIRsharing.we178a"}
{"name": "Microbial Genome Annotation & Analysis Platform", "originalId": "2390", "websiteurl": "http://www.genoscope.cns.fr/agc/microscope/home/", "collectedfrom": "FAIRsharing", "alternativeNames": ["MicroScope"], "id": "https://fairsharing.org/10.25504/FAIRsharing.3t5qc3"}
{"name": "China National GeneBank DataBase", "originalId": "2748", "websiteurl": "https://db.cngb.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CNGBdb"], "id": "https://fairsharing.org/10.25504/FAIRsharing.9btRvC"}
{"name": "The Triticeae Toolbox", "originalId": "2442", "websiteurl": "https://triticeaetoolbox.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["T3"], "id": "https://fairsharing.org/10.25504/FAIRsharing.55ev2y"}
{"name": "System for Earth Sample Registration Catalog", "originalId": "2447", "websiteurl": "http://www.geosamples.org", "collectedfrom": "FAIRsharing", "alternativeNames": ["SESAR Catalog"], "id": "https://fairsharing.org/10.25504/FAIRsharing.ys5ta3"}
{"name": "EMODnet Human Activities", "originalId": "2981", "websiteurl": "https://www.emodnet-humanactivities.eu/", "collectedfrom": "FAIRsharing", "alternativeNames": [null], "id": "https://fairsharing.org/10.25504/FAIRsharing.VErHgW"}
{"name": "Biodiversity Heritage Library", "originalId": "2886", "websiteurl": "https://biodiversitylibrary.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["BHL"], "id": "https://fairsharing.org/10.25504/FAIRsharing.yNNTvk"}
{"name": "Database of Interacting Proteins", "originalId": "2089", "websiteurl": "https://dip.doe-mbi.ucla.edu/dip/Main.cgi", "collectedfrom": "FAIRsharing", "alternativeNames": ["DIP"], "id": "https://fairsharing.org/10.25504/FAIRsharing.qje0v8"}
{"name": "UniProt Knowledgebase", "originalId": "2077", "websiteurl": "https://www.uniprot.org/uniprot/", "collectedfrom": "FAIRsharing", "alternativeNames": ["UniProtKB"], "id": "https://fairsharing.org/10.25504/FAIRsharing.s1ne3g"}
{"name": "Mouse Genome Database - a Mouse Genome Informatics (MGI) Resource", "originalId": "1955", "websiteurl": "http://www.informatics.jax.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["MGI"], "id": "https://fairsharing.org/10.25504/FAIRsharing.fcwyhz"}
{"name": "GrainGenes, a Database for Triticeae and Avena", "originalId": "2351", "websiteurl": "https://wheat.pw.usda.gov/GG3/", "collectedfrom": "FAIRsharing", "alternativeNames": ["GrainGenes"], "id": "https://fairsharing.org/10.25504/FAIRsharing.pcs58g"}
{"name": "Termini-Oriented Protein Function INferred Database", "originalId": "1693", "websiteurl": "https://topfind.clip.msl.ubc.ca/", "collectedfrom": "FAIRsharing", "alternativeNames": ["TopFIND"], "id": "https://fairsharing.org/10.25504/FAIRsharing.rkpmhn"}
{"name": "Geothermal Data Repository", "originalId": "3580", "websiteurl": "https://gdr.openei.org/home", "collectedfrom": "FAIRsharing", "alternativeNames": ["GDR"], "id": "https://fairsharing.org/10.25504/FAIRsharing.c28bae"}
{"name": "CottonGen", "originalId": "2573", "websiteurl": "https://www.cottongen.org/", "collectedfrom": "FAIRsharing", "alternativeNames": ["CottonGen"], "id": "https://fairsharing.org/10.25504/FAIRsharing.2f668a"}

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{
"wf" : {
"threshold" : "0.99",
"dedupRun" : "001",
"entityType" : "datasource",
"orderField" : "name",
"queueMaxSize" : "2000",
"groupMaxSize" : "50",
"slidingWindowSize" : "200",
"idPath":"$.id",
"rootBuilder" : [ "organization", "projectOrganization_participation_isParticipant", "datasourceOrganization_provision_isProvidedBy" ],
"includeChildren" : "true",
"maxIterations": "20"
},
"pace" : {
"clustering" : [
{ "name" : "sortedngrampairs", "fields" : [ "name" ], "params" : { "max" : 2, "ngramLen" : "3"} },
{ "name" : "suffixprefix", "fields" : [ "name" ], "params" : { "max" : 1, "len" : "3" } },
{ "name" : "urlclustering", "fields" : [ "websiteurl" ], "params" : { } }
],
"decisionTree" : {
"start": {
"fields": [
{
"field": "websiteurl",
"comparator": "domainExactMatch",
"weight": 1,
"countIfUndefined": "false",
"params": {}
}
],
"threshold": 1,
"aggregation": "AVG",
"positive": "layer2",
"negative": "NO_MATCH",
"undefined": "layer2",
"ignoreUndefined": "true"
},
"layer2": {
"fields": [
{
"field": "name",
"comparator": "levensteinTitle",
"weight": 1.0,
"countIfUndefined": "true",
"params": {
}
}
],
"threshold": 0.9,
"aggregation": "AVG",
"positive": "MATCH",
"negative": "NO_MATCH",
"undefined": "NO_MATCH",
"ignoreUndefined": "true"
}
},
"model" : [
{ "name" : "name", "type" : "String", "path" : "$.name" },
{ "name" : "websiteurl", "type" : "URL", "path" : "$.websiteurl" }
],
"blacklists" : {
"legalname" : []
},
"synonyms": {}
}
}

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deduplication/ds_to_json.py
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# coding=utf-8
from pyspark import SparkContext
from pyspark import SparkConf
from pyspark.sql import SparkSession
import json
#!/usr/bin/python
import os
import sys
import shutil
def deleteDir(x):
try:
shutil.rmtree(x)
except OSError as e:
print("Error: %s - %s." % (e.filename, e.strerror))
def stringToArray(x):
try:
return eval(x)
except:
return []
def testValidJSON(x):
try:
json.loads(x)
return True
except:
return False
conf = SparkConf().setAppName('fairshare').setMaster('local[*]')
sc = SparkContext(conf=conf)
spark = SparkSession.builder.config(conf=conf).getOrCreate()
deleteDir("datasources")
fairsharing_path = "../data/raw/fairsharing_dump_api_02_2022.json"
opendoar_path = "../data/raw/openDoar.tsv"
re3data_path = "../data/raw/re3data.tsv"
roar_path = "../data/raw/export_roar_CSV.csv"
# #FAIRSHARING V1.0
# #FILE STRUCTURE: Full name of record | Short name | FAIRsharing URL | Homepage URL of the resource | Country Field | Subjects
# fairsharing = sc.textFile("/Users/miconis/Desktop/Fairsharing dedup/registries_analysis/data/raw/FAIRsharingDBrec_summary20210304.csv")
# fairsharing = fairsharing.filter(lambda x: " FAIRsharing URL " not in x.split("|")).map(lambda x: dict(fullname=x.split("|")[0], shortname=x.split("|")[1], fairshare_url=x.split("|")[2], homepage_url=x.split("|")[3], country=x.split("|")[4], subjects=x.split("|")[5]))
# fairsharing = fairsharing.map(lambda x: dict(id=x['fairshare_url'], originalId=x['fairshare_url'], websiteurl=x['homepage_url'], name=x['fullname'], alternativeNames=[x['shortname']], collectedfrom="FAIRsharing"))
#
# print "FAIRSHARING:" + str(fairsharing.count())
#FAIRSHARING (file structure: )
fairsharing = sc.textFile(fairsharing_path).filter(testValidJSON).map(json.loads)
fairsharing = fairsharing.map(lambda x: dict(id=x['attributes']['url'], originalId=x['id'], websiteurl=x['attributes']['metadata']['homepage'], name=x['attributes']['metadata']['name'], alternativeNames=[x['attributes']['abbreviation']], collectedfrom="FAIRsharing"))
print("FAIRSHARING DS", fairsharing.count())
#OPENDOAR (file structure: OpenAIREID orgIdentifier repositoryName alternativeNames repositoryURL description type updateDate startDate subject contentType institution metadataPolicy dataPolicy submissionPolicy contentPolicy software api)
opendoar = sc.textFile(opendoar_path)
opendoar = opendoar.filter(lambda x: "system_metadata.id" not in x.split("\t")).map(lambda x: dict(fullname=x.split("\t")[1], shortname=x.split("\t")[1], alternativeNames=x.split("\t")[2], opendoar_id=x.split("\t")[0], homepage_url=x.split("\t")[3], subjects=x.split("\t")[9], openaire_id="opendoar::"+x.split("\t")[0]))
opendoar = opendoar.map(lambda x: dict(id=x['openaire_id'], originalId=x['opendoar_id'], websiteurl=x['homepage_url'], name=json.loads(x['fullname'])['name'], alternativeNames=x['alternativeNames'], collectedfrom="OpenDOAR"))
print("OPENDOAR DS", opendoar.count())
#RE3DATA (file structure: openaire_id re3data_id repository_name additional_name repository_url repository_id description type size update_date start_date end_date subject mission_statement content_type provider_type keyword institution policy database_access database_license data_access data_license data_upload data_upload_license software versioning api pid_system citation_guideline_url aid_system enhanced_publication quality_management certificate metadata_standard syndication remarks entry_date last_update)
re3data = sc.textFile(re3data_path)
re3data = re3data.filter(lambda x: "repositoryName.language" not in x.split("\t")).map(lambda x: dict(fullname=x.split("\t")[1], shortname=x.split("\t")[3], re3data_id=x.split("\t")[0], homepage_url=x.split("\t")[4], subjects=x.split("\t")[14], openaire_id="re3data::"+x.split("\t")[0]))
re3data = re3data.map(lambda x: dict(id=x['openaire_id'], originalId=x['re3data_id'], websiteurl=x['homepage_url'], name=x['fullname'], alternativeNames=stringToArray(x['shortname']), collectedfrom="re3data"))
print("RE3DATA", re3data.count())
#ROAR (file structure: "eprintid","rev_number","eprint_status","userid","importid","source","dir","datestamp","lastmod","status_changed","type","succeeds","commentary","metadata_visibility","latitude","longitude","relation_type","relation_uri","item_issues_id","item_issues_type","item_issues_description","item_issues_timestamp","item_issues_status","item_issues_reported_by","item_issues_resolved_by","item_issues_comment","item_issues_count","sword_depositor","sword_slug","exemplar","home_page","title","oai_pmh","sword_endpoint","rss_feed","twitter_feed","description","fulltext","open_access","mandate","organisation_title","organisation_home_page","location_country","location_city","location_latitude","location_longitude","software","geoname","version","subjects","date","note","suggestions","activity_low","activity_medium","activity_high","recordcount","recordhistory","fulltexts_total","fulltexts_docs","fulltexts_rtotal","fulltexts_rdocs","registry_name","registry_id","submit_to","submitted_to_name","submitted_to_done","webometrics_rank","webometrics_size","webometrics_visibility","webometrics_rich_files","webometrics_scholar","monthly_deposits","total_deposits","association")
roar = sc.textFile(roar_path)
roar = roar.filter(lambda x: "\"eprintid\"" not in x.split(",")).filter(lambda x: len(x.split(","))>31).map(lambda x: dict(id=x.split(",")[0], homepage_url=x.split(",")[30], title=x.split(",")[31])).filter(lambda x: x['title'] != "" and x['homepage_url'] != "")
roar = roar.map(lambda x: dict(id="roar::"+x['id'].replace("\"",""), originalId=x['id'].replace("\"",""), websiteurl=x['homepage_url'].replace("\"",""), name=x['title'].replace("\"", ""), alternativeNames=[], collectedfrom="roar"))
roar = roar.filter(lambda x: x['id'] != "" and x['name'] != "")
roar = roar.map(lambda x: (x['id'], x)).reduceByKey(lambda x, y: x).map(lambda x: x[1])
print "ROAR:" + str(roar.count())
all_ds = fairsharing.union(opendoar).union(re3data).union(roar)
all_ds.map(json.dumps).saveAsTextFile("datasources")

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52
deduplication/mergerels_to_csv.py
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@ -1,52 +0,0 @@
# coding=utf-8
from pyspark import SparkContext
from pyspark import SparkConf
from pyspark.sql import SparkSession
import json
from datetime import datetime
def isRe3data(x):
for id in x:
if 're3data' in id:
return True
return False
def relToRe3data(x):
rel = []
re3data = ''
for id in x:
if 're3data' in id:
re3data = id
for id in x:
rel.append((re3data, id))
return rel
conf = SparkConf().setAppName('FAIRsharing').setMaster('local[*]')
sc = SparkContext(conf=conf)
spark = SparkSession.builder.config(conf=conf).getOrCreate()
datasources = sc.textFile("datasources").map(json.loads)
print("TOTAL DS", datasources.count())
print("ROAR", datasources.filter(lambda x: "roar" in x['collectedfrom']).count())
print("FAIRsharing", datasources.filter(lambda x: "FAIRsharing" in x['collectedfrom']).count())
print("OpenDOAR", datasources.filter(lambda x: "OpenDOAR" in x['collectedfrom']).count())
print("re3data", datasources.filter(lambda x: "re3data" in x['collectedfrom']).count())
mergerels = spark.read.load("mergerels").rdd
print("Number of mergerels", mergerels.count())
#TO RE3DATA
# mergerels = mergerels.map(lambda x: (x['source'], x['target'])).groupByKey().filter(lambda x: isRe3data(x[1])).flatMap(lambda x: relToRe3data(x[1])).map(lambda x: dict(source=x[0], target=x[1]))
joinRes = mergerels.map(lambda x: (x['target'], x['source'])).join(datasources.map(lambda x: (x['id'], x)))
joinRes = joinRes.map(lambda x: dict(dedup_id=x[1][0], duplicate_id=x[0], original_id=x[1][1]['originalId'], name=x[1][1]['name'].replace("\"",""), collectedfrom=x[1][1]['collectedfrom'])).sortBy(lambda x: x['dedup_id'])
#CREATE CSV FILE (file structure: dedup_id; duplicate_id; original_id; name; collectedfrom
csv_name = "ds_dedup_" + str(datetime.now()).split(".")[0].replace(" ", "_").replace(":", ".") + ".csv"
f = open(csv_name, "w")
f.write("dedup_id;duplicate_id;original_id;name;collectedfrom\n")
for row in joinRes.collect():
line = row['dedup_id'] + ";" + row['duplicate_id'] + ";" + row['original_id'] + ";\"" + row['name'] + "\";" + row['collectedfrom'] + "\n"
f.write(line.encode("utf-8"))
f.close()

153
docs/Makefile
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@ -1,153 +0,0 @@
# Makefile for Sphinx documentation
#
# You can set these variables from the command line.
SPHINXOPTS =
SPHINXBUILD = sphinx-build
PAPER =
BUILDDIR = _build
# Internal variables.
PAPEROPT_a4 = -D latex_paper_size=a4
PAPEROPT_letter = -D latex_paper_size=letter
ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
# the i18n builder cannot share the environment and doctrees with the others
I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) .
.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext
help:
@echo "Please use \`make <target>' where <target> is one of"
@echo " html to make standalone HTML files"
@echo " dirhtml to make HTML files named index.html in directories"
@echo " singlehtml to make a single large HTML file"
@echo " pickle to make pickle files"
@echo " json to make JSON files"
@echo " htmlhelp to make HTML files and a HTML help project"
@echo " qthelp to make HTML files and a qthelp project"
@echo " devhelp to make HTML files and a Devhelp project"
@echo " epub to make an epub"
@echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter"
@echo " latexpdf to make LaTeX files and run them through pdflatex"
@echo " text to make text files"
@echo " man to make manual pages"
@echo " texinfo to make Texinfo files"
@echo " info to make Texinfo files and run them through makeinfo"
@echo " gettext to make PO message catalogs"
@echo " changes to make an overview of all changed/added/deprecated items"
@echo " linkcheck to check all external links for integrity"
@echo " doctest to run all doctests embedded in the documentation (if enabled)"
clean:
-rm -rf $(BUILDDIR)/*
html:
$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
@echo
@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
dirhtml:
$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml
@echo
@echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml."
singlehtml:
$(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml
@echo
@echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml."
pickle:
$(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle
@echo
@echo "Build finished; now you can process the pickle files."
json:
$(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json
@echo
@echo "Build finished; now you can process the JSON files."
htmlhelp:
$(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp
@echo
@echo "Build finished; now you can run HTML Help Workshop with the" \
".hhp project file in $(BUILDDIR)/htmlhelp."
qthelp:
$(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp
@echo
@echo "Build finished; now you can run "qcollectiongenerator" with the" \
".qhcp project file in $(BUILDDIR)/qthelp, like this:"
@echo "# qcollectiongenerator $(BUILDDIR)/qthelp/data-registries.qhcp"
@echo "To view the help file:"
@echo "# assistant -collectionFile $(BUILDDIR)/qthelp/data-registries.qhc"
devhelp:
$(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp
@echo
@echo "Build finished."
@echo "To view the help file:"
@echo "# mkdir -p $$HOME/.local/share/devhelp/data-registries"
@echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/data-registries"
@echo "# devhelp"
epub:
$(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub
@echo
@echo "Build finished. The epub file is in $(BUILDDIR)/epub."
latex:
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
@echo
@echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex."
@echo "Run \`make' in that directory to run these through (pdf)latex" \
"(use \`make latexpdf' here to do that automatically)."
latexpdf:
$(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex
@echo "Running LaTeX files through pdflatex..."
$(MAKE) -C $(BUILDDIR)/latex all-pdf
@echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex."
text:
$(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text
@echo
@echo "Build finished. The text files are in $(BUILDDIR)/text."
man:
$(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man
@echo
@echo "Build finished. The manual pages are in $(BUILDDIR)/man."
texinfo:
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
@echo
@echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo."
@echo "Run \`make' in that directory to run these through makeinfo" \
"(use \`make info' here to do that automatically)."
info:
$(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo
@echo "Running Texinfo files through makeinfo..."
make -C $(BUILDDIR)/texinfo info
@echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo."
gettext:
$(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale
@echo
@echo "Build finished. The message catalogs are in $(BUILDDIR)/locale."
changes:
$(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes
@echo
@echo "The overview file is in $(BUILDDIR)/changes."
linkcheck:
$(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck
@echo
@echo "Link check complete; look for any errors in the above output " \
"or in $(BUILDDIR)/linkcheck/output.txt."
doctest:
$(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest
@echo "Testing of doctests in the sources finished, look at the " \
"results in $(BUILDDIR)/doctest/output.txt."

10
docs/commands.rst
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@ -1,10 +0,0 @@
Commands
========
The Makefile contains the central entry points for common tasks related to this project.
Syncing data to S3
^^^^^^^^^^^^^^^^^^
* `make sync_data_to_s3` will use `aws s3 sync` to recursively sync files in `data/` up to `s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/`.
* `make sync_data_from_s3` will use `aws s3 sync` to recursively sync files from `s3://[OPTIONAL] your-bucket-for-syncing-data (do not include 's3://')/data/` to `data/`.

244
docs/conf.py
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@ -1,244 +0,0 @@
# -*- coding: utf-8 -*-
#
# data-registries documentation build configuration file, created by
# sphinx-quickstart.
#
# This file is execfile()d with the current directory set to its containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.
import os
import sys
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
# sys.path.insert(0, os.path.abspath('.'))
# -- General configuration -----------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
# needs_sphinx = '1.0'
# Add any Sphinx extension module names here, as strings. They can be extensions
# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = []
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix of source filenames.
source_suffix = '.rst'
# The encoding of source files.
# source_encoding = 'utf-8-sig'
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = u'data-registries'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = '0.1'
# The full version, including alpha/beta/rc tags.
release = '0.1'
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
# language = None
# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
# today = ''
# Else, today_fmt is used as the format for a strftime call.
# today_fmt = '%B %d, %Y'
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
exclude_patterns = ['_build']
# The reST default role (used for this markup: `text`) to use for all documents.
# default_role = None
# If true, '()' will be appended to :func: etc. cross-reference text.
# add_function_parentheses = True
# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
# add_module_names = True
# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
# show_authors = False
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []
# -- Options for HTML output ---------------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
html_theme = 'default'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
# html_theme_options = {}
# Add any paths that contain custom themes here, relative to this directory.
# html_theme_path = []
# The name for this set of Sphinx documents. If None, it defaults to
# "<project> v<release> documentation".
# html_title = None
# A shorter title for the navigation bar. Default is the same as html_title.
# html_short_title = None
# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
# html_logo = None
# The name of an image file (within the static path) to use as favicon of the
# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
# html_favicon = None
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
# using the given strftime format.
# html_last_updated_fmt = '%b %d, %Y'
# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
# html_use_smartypants = True
# Custom sidebar templates, maps document names to template names.
# html_sidebars = {}
# Additional templates that should be rendered to pages, maps page names to
# template names.
# html_additional_pages = {}
# If false, no module index is generated.
# html_domain_indices = True
# If false, no index is generated.
# html_use_index = True
# If true, the index is split into individual pages for each letter.
# html_split_index = False
# If true, links to the reST sources are added to the pages.
# html_show_sourcelink = True
# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
# html_show_sphinx = True
# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
# html_show_copyright = True
# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it. The value of this option must be the
# base URL from which the finished HTML is served.
# html_use_opensearch = ''
# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None
# Output file base name for HTML help builder.
htmlhelp_basename = 'data-registriesdoc'
# -- Options for LaTeX output --------------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
# 'preamble': '',
}
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass [howto/manual]).
latex_documents = [
('index',
'data-registries.tex',
u'data-registries Documentation',
u"Andrea Mannocci", 'manual'),
]
# The name of an image file (relative to this directory) to place at the top of
# the title page.
# latex_logo = None
# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
# latex_use_parts = False
# If true, show page references after internal links.
# latex_show_pagerefs = False
# If true, show URL addresses after external links.
# latex_show_urls = False
# Documents to append as an appendix to all manuals.
# latex_appendices = []
# If false, no module index is generated.
# latex_domain_indices = True
# -- Options for manual page output --------------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
('index', 'data-registries', u'data-registries Documentation',
[u"Andrea Mannocci"], 1)
]
# If true, show URL addresses after external links.
# man_show_urls = False
# -- Options for Texinfo output ------------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
('index', 'data-registries', u'data-registries Documentation',
u"Andrea Mannocci", 'data-registries',
'A short description of the project.', 'Miscellaneous'),
]
# Documents to append as an appendix to all manuals.
# texinfo_appendices = []
# If false, no module index is generated.
# texinfo_domain_indices = True
# How to display URL addresses: 'footnote', 'no', or 'inline'.
# texinfo_show_urls = 'footnote'

6
docs/getting-started.rst
View File

@ -1,6 +0,0 @@
Getting started
===============
This is where you describe how to get set up on a clean install, including the
commands necessary to get the raw data (using the `sync_data_from_s3` command,
for example), and then how to make the cleaned, final data sets.

24
docs/index.rst
View File

@ -1,24 +0,0 @@
.. data-registries documentation master file, created by
sphinx-quickstart.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
data-registries documentation!
==============================================
Contents:
.. toctree::
:maxdepth: 2
getting-started
commands
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

190
docs/make.bat
View File

@ -1,190 +0,0 @@
@ECHO OFF
REM Command file for Sphinx documentation
if "%SPHINXBUILD%" == "" (
set SPHINXBUILD=sphinx-build
)
set BUILDDIR=_build
set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% .
set I18NSPHINXOPTS=%SPHINXOPTS% .
if NOT "%PAPER%" == "" (
set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS%
set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS%
)
if "%1" == "" goto help
if "%1" == "help" (
:help
echo.Please use `make ^<target^>` where ^<target^> is one of
echo. html to make standalone HTML files
echo. dirhtml to make HTML files named index.html in directories
echo. singlehtml to make a single large HTML file
echo. pickle to make pickle files
echo. json to make JSON files
echo. htmlhelp to make HTML files and a HTML help project
echo. qthelp to make HTML files and a qthelp project
echo. devhelp to make HTML files and a Devhelp project
echo. epub to make an epub
echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter
echo. text to make text files
echo. man to make manual pages
echo. texinfo to make Texinfo files
echo. gettext to make PO message catalogs
echo. changes to make an overview over all changed/added/deprecated items
echo. linkcheck to check all external links for integrity
echo. doctest to run all doctests embedded in the documentation if enabled
goto end
)
if "%1" == "clean" (
for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i
del /q /s %BUILDDIR%\*
goto end
)
if "%1" == "html" (
%SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The HTML pages are in %BUILDDIR%/html.
goto end
)
if "%1" == "dirhtml" (
%SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml.
goto end
)
if "%1" == "singlehtml" (
%SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml.
goto end
)
if "%1" == "pickle" (
%SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle
if errorlevel 1 exit /b 1
echo.
echo.Build finished; now you can process the pickle files.
goto end
)
if "%1" == "json" (
%SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json
if errorlevel 1 exit /b 1
echo.
echo.Build finished; now you can process the JSON files.
goto end
)
if "%1" == "htmlhelp" (
%SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp
if errorlevel 1 exit /b 1
echo.
echo.Build finished; now you can run HTML Help Workshop with the ^
.hhp project file in %BUILDDIR%/htmlhelp.
goto end
)
if "%1" == "qthelp" (
%SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp
if errorlevel 1 exit /b 1
echo.
echo.Build finished; now you can run "qcollectiongenerator" with the ^
.qhcp project file in %BUILDDIR%/qthelp, like this:
echo.^> qcollectiongenerator %BUILDDIR%\qthelp\data-registries.qhcp
echo.To view the help file:
echo.^> assistant -collectionFile %BUILDDIR%\qthelp\data-registries.ghc
goto end
)
if "%1" == "devhelp" (
%SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp
if errorlevel 1 exit /b 1
echo.
echo.Build finished.
goto end
)
if "%1" == "epub" (
%SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The epub file is in %BUILDDIR%/epub.
goto end
)
if "%1" == "latex" (
%SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex
if errorlevel 1 exit /b 1
echo.
echo.Build finished; the LaTeX files are in %BUILDDIR%/latex.
goto end
)
if "%1" == "text" (
%SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The text files are in %BUILDDIR%/text.
goto end
)
if "%1" == "man" (
%SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The manual pages are in %BUILDDIR%/man.
goto end
)
if "%1" == "texinfo" (
%SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo.
goto end
)
if "%1" == "gettext" (
%SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale
if errorlevel 1 exit /b 1
echo.
echo.Build finished. The message catalogs are in %BUILDDIR%/locale.
goto end
)
if "%1" == "changes" (
%SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes
if errorlevel 1 exit /b 1
echo.
echo.The overview file is in %BUILDDIR%/changes.
goto end
)
if "%1" == "linkcheck" (
%SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck
if errorlevel 1 exit /b 1
echo.
echo.Link check complete; look for any errors in the above output ^
or in %BUILDDIR%/linkcheck/output.txt.
goto end
)
if "%1" == "doctest" (
%SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest
if errorlevel 1 exit /b 1
echo.
echo.Testing of doctests in the sources finished, look at the ^
results in %BUILDDIR%/doctest/output.txt.
goto end
)
:end

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models/.gitkeep
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0
references/.gitkeep
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0
reports/.gitkeep
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0
reports/figures/.gitkeep
View File