{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import ast\n",
    "import csv\n",
    "import json\n",
    "import reverse_geocoder as rg\n",
    "\n",
    "import numpy as np\n",
    "import pandas as pd\n",
    "\n",
    "import pycountry_convert\n",
    "\n",
    "import matplotlib.pyplot as plt\n",
    "from matplotlib_venn import venn2, venn2_circles\n",
    "\n",
    "import plotly\n",
    "from plotly.offline import iplot, init_notebook_mode\n",
    "import plotly.graph_objs as go\n",
    "import plotly.express as px\n",
    "\n",
    "pd.set_option('display.max_columns', None)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "def country_to_countrycode(country):\n",
    "    if pd.isna(country):\n",
    "        return np.nan\n",
    "    else:\n",
    "        try:\n",
    "            return pycountry_convert.country_name_to_country_alpha3(country)\n",
    "        except:\n",
    "            return np.nan\n",
    "        \n",
    "def countrycode_iso2_to_countrycode_iso3(country):\n",
    "    if pd.isna(country):\n",
    "        return np.nan\n",
    "    else:\n",
    "        try:\n",
    "            return pycountry_convert.country_name_to_country_alpha3(pycountry_convert.country_alpha2_to_country_name(country))\n",
    "        except:\n",
    "            return np.nan\n",
    "\n",
    "def countrycode_to_continent(country_code):\n",
    "    if pd.isna(country_code):\n",
    "        return np.nan\n",
    "    else:\n",
    "        try:\n",
    "            return pycountry_convert.country_alpha2_to_continent_code(pycountry_convert.country_alpha3_to_country_alpha2(country_code))\n",
    "        except:\n",
    "            return np.nan"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Loading datasets"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**re3data**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>re3data_id</th>\n",
       "      <th>repository_name</th>\n",
       "      <th>type</th>\n",
       "      <th>subject</th>\n",
       "      <th>provider_type</th>\n",
       "      <th>keyword</th>\n",
       "      <th>institution</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>r3d100000001</td>\n",
       "      <td>Odum Institute Archive Dataverse</td>\n",
       "      <td>[disciplinary]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 111 Social ...</td>\n",
       "      <td>[dataProvider]</td>\n",
       "      <td>[FAIR, Middle East, crime, demography, economy...</td>\n",
       "      <td>[[Odum Institute for Research in Social Scienc...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>r3d100000002</td>\n",
       "      <td>Access to Archival Databases</td>\n",
       "      <td>[disciplinary]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 102 History...</td>\n",
       "      <td>[dataProvider]</td>\n",
       "      <td>[US History]</td>\n",
       "      <td>[[The U.S. National Archives and Records Admin...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>r3d100000004</td>\n",
       "      <td>Datenbank Gesprochenes Deutsch</td>\n",
       "      <td>[disciplinary]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 104 Linguis...</td>\n",
       "      <td>[dataProvider, serviceProvider]</td>\n",
       "      <td>[Australian German, FOLK, German dialects, Pfe...</td>\n",
       "      <td>[[Institut für Deutsche Sprache, Archiv für Ge...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>r3d100000005</td>\n",
       "      <td>UNC Dataverse</td>\n",
       "      <td>[institutional]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 111 Social ...</td>\n",
       "      <td>[dataProvider, serviceProvider]</td>\n",
       "      <td>[FAIR, census, demographic survey, demography,...</td>\n",
       "      <td>[[Odum Institute for Research in Social Scienc...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>r3d100000006</td>\n",
       "      <td>Archaeology Data Service</td>\n",
       "      <td>[disciplinary]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 101 Ancient...</td>\n",
       "      <td>[dataProvider, serviceProvider]</td>\n",
       "      <td>[FAIR, archaeology, cultural heritage, prehist...</td>\n",
       "      <td>[[Arts and Humanities Research Council, [AHRC]...</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "     re3data_id                   repository_name             type  \\\n",
       "0  r3d100000001  Odum Institute Archive Dataverse   [disciplinary]   \n",
       "1  r3d100000002      Access to Archival Databases   [disciplinary]   \n",
       "2  r3d100000004    Datenbank Gesprochenes Deutsch   [disciplinary]   \n",
       "3  r3d100000005                     UNC Dataverse  [institutional]   \n",
       "4  r3d100000006          Archaeology Data Service   [disciplinary]   \n",
       "\n",
       "                                             subject  \\\n",
       "0  [1 Humanities and Social Sciences, 111 Social ...   \n",
       "1  [1 Humanities and Social Sciences, 102 History...   \n",
       "2  [1 Humanities and Social Sciences, 104 Linguis...   \n",
       "3  [1 Humanities and Social Sciences, 111 Social ...   \n",
       "4  [1 Humanities and Social Sciences, 101 Ancient...   \n",
       "\n",
       "                     provider_type  \\\n",
       "0                   [dataProvider]   \n",
       "1                   [dataProvider]   \n",
       "2  [dataProvider, serviceProvider]   \n",
       "3  [dataProvider, serviceProvider]   \n",
       "4  [dataProvider, serviceProvider]   \n",
       "\n",
       "                                             keyword  \\\n",
       "0  [FAIR, Middle East, crime, demography, economy...   \n",
       "1                                       [US History]   \n",
       "2  [Australian German, FOLK, German dialects, Pfe...   \n",
       "3  [FAIR, census, demographic survey, demography,...   \n",
       "4  [FAIR, archaeology, cultural heritage, prehist...   \n",
       "\n",
       "                                         institution  \n",
       "0  [[Odum Institute for Research in Social Scienc...  \n",
       "1  [[The U.S. National Archives and Records Admin...  \n",
       "2  [[Institut für Deutsche Sprache, Archiv für Ge...  \n",
       "3  [[Odum Institute for Research in Social Scienc...  \n",
       "4  [[Arts and Humanities Research Council, [AHRC]...  "
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "re3data_df = pd.read_csv('../data/raw/re3data.tsv', delimiter='\\t', \n",
    "                        converters={'subject': ast.literal_eval,\n",
    "                                    'keyword': ast.literal_eval,\n",
    "                                    'additional_name': ast.literal_eval,\n",
    "                                    'repository_id': ast.literal_eval,\n",
    "                                    'type': ast.literal_eval,\n",
    "                                    'content_type': ast.literal_eval,\n",
    "                                    'provider_type': ast.literal_eval,\n",
    "                                    'institution': ast.literal_eval\n",
    "                                    },\n",
    "                        usecols=['re3data_id', 'repository_name', 'subject', 'keyword', 'type', 'provider_type', 'institution'])\n",
    "re3data_df.head()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**HERE I AM FILTERING SERVICE PROVIDERS OUT!!**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "re3data_df = re3data_df.explode('provider_type')\n",
    "re3data_df = re3data_df[re3data_df.provider_type != 'serviceProvider']"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "scrolled": false
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
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       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>re3data_id</th>\n",
       "      <th>repository_name</th>\n",
       "      <th>type</th>\n",
       "      <th>subject</th>\n",
       "      <th>provider_type</th>\n",
       "      <th>keyword</th>\n",
       "      <th>institution</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>count</th>\n",
       "      <td>2467</td>\n",
       "      <td>2467</td>\n",
       "      <td>2467</td>\n",
       "      <td>2467</td>\n",
       "      <td>2459</td>\n",
       "      <td>2467</td>\n",
       "      <td>2467</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>unique</th>\n",
       "      <td>2466</td>\n",
       "      <td>2463</td>\n",
       "      <td>9</td>\n",
       "      <td>1282</td>\n",
       "      <td>1</td>\n",
       "      <td>2248</td>\n",
       "      <td>2447</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>top</th>\n",
       "      <td>r3d100011987</td>\n",
       "      <td>Landmap</td>\n",
       "      <td>[disciplinary]</td>\n",
       "      <td>[1 Humanities and Social Sciences, 2 Life Scie...</td>\n",
       "      <td>dataProvider</td>\n",
       "      <td>[multidisciplinary]</td>\n",
       "      <td>[[National Center for Biotechnology Informatio...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>freq</th>\n",
       "      <td>2</td>\n",
       "      <td>2</td>\n",
       "      <td>1573</td>\n",
       "      <td>200</td>\n",
       "      <td>2459</td>\n",
       "      <td>181</td>\n",
       "      <td>6</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "          re3data_id repository_name            type  \\\n",
       "count           2467            2467            2467   \n",
       "unique          2466            2463               9   \n",
       "top     r3d100011987         Landmap  [disciplinary]   \n",
       "freq               2               2            1573   \n",
       "\n",
       "                                                  subject provider_type  \\\n",
       "count                                                2467          2459   \n",
       "unique                                               1282             1   \n",
       "top     [1 Humanities and Social Sciences, 2 Life Scie...  dataProvider   \n",
       "freq                                                  200          2459   \n",
       "\n",
       "                    keyword                                        institution  \n",
       "count                  2467                                               2467  \n",
       "unique                 2248                                               2447  \n",
       "top     [multidisciplinary]  [[National Center for Biotechnology Informatio...  \n",
       "freq                    181                                                  6  "
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "re3data_df.describe(include='all')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**openDOAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
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       "\n",
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       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>opendoar_id</th>\n",
       "      <th>repository_name</th>\n",
       "      <th>type</th>\n",
       "      <th>subject</th>\n",
       "      <th>institution</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>101</td>\n",
       "      <td>utrecht university repository</td>\n",
       "      <td>institutional</td>\n",
       "      <td>[multidisciplinary]</td>\n",
       "      <td>[[university of utrecht, [universiteit utrecht...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>115</td>\n",
       "      <td>dspace at indian institute of management kozhi...</td>\n",
       "      <td>institutional</td>\n",
       "      <td>[ecology and environment, social sciences gene...</td>\n",
       "      <td>[[indian institute of management kozhikode, [i...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>41</td>\n",
       "      <td>caltech engineering and science online</td>\n",
       "      <td>institutional</td>\n",
       "      <td>[biology and biochemistry, chemistry and chemi...</td>\n",
       "      <td>[[california institute of technology, [caltech...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>119</td>\n",
       "      <td>dcu online research access service</td>\n",
       "      <td>institutional</td>\n",
       "      <td>[multidisciplinary]</td>\n",
       "      <td>[[dublin city university, [dcu], ie, [], , htt...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>129</td>\n",
       "      <td>earth-prints repository</td>\n",
       "      <td>disciplinary</td>\n",
       "      <td>[earth and planetary sciences]</td>\n",
       "      <td>[[istituto nazionale di geofisica e vulcanolog...</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   opendoar_id                                    repository_name  \\\n",
       "0          101                      utrecht university repository   \n",
       "1          115  dspace at indian institute of management kozhi...   \n",
       "2           41             caltech engineering and science online   \n",
       "3          119                 dcu online research access service   \n",
       "4          129                            earth-prints repository   \n",
       "\n",
       "            type                                            subject  \\\n",
       "0  institutional                                [multidisciplinary]   \n",
       "1  institutional  [ecology and environment, social sciences gene...   \n",
       "2  institutional  [biology and biochemistry, chemistry and chemi...   \n",
       "3  institutional                                [multidisciplinary]   \n",
       "4   disciplinary                     [earth and planetary sciences]   \n",
       "\n",
       "                                         institution  \n",
       "0  [[university of utrecht, [universiteit utrecht...  \n",
       "1  [[indian institute of management kozhikode, [i...  \n",
       "2  [[california institute of technology, [caltech...  \n",
       "3  [[dublin city university, [dcu], ie, [], , htt...  \n",
       "4  [[istituto nazionale di geofisica e vulcanolog...  "
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "opendoar_df = pd.read_csv('../data/raw/openDoar.tsv', delimiter='\\t',\n",
    "                         converters={'subject': ast.literal_eval,\n",
    "                                    'additional_name': ast.literal_eval,\n",
    "                                    'opendoar_id': ast.literal_eval,\n",
    "                                    'content_type': ast.literal_eval,\n",
    "                                    'institution': ast.literal_eval\n",
    "                                    },\n",
    "                        usecols=['opendoar_id', 'repository_name', 'subject', 'type', 'institution'])\n",
    "opendoar_df.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>opendoar_id</th>\n",
       "      <th>repository_name</th>\n",
       "      <th>type</th>\n",
       "      <th>subject</th>\n",
       "      <th>institution</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>count</th>\n",
       "      <td>5707.000000</td>\n",
       "      <td>5707</td>\n",
       "      <td>5707</td>\n",
       "      <td>5707</td>\n",
       "      <td>5707</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>unique</th>\n",
       "      <td>NaN</td>\n",
       "      <td>5670</td>\n",
       "      <td>4</td>\n",
       "      <td>820</td>\n",
       "      <td>5098</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>top</th>\n",
       "      <td>NaN</td>\n",
       "      <td>arch</td>\n",
       "      <td>institutional</td>\n",
       "      <td>[multidisciplinary]</td>\n",
       "      <td>[[rijksuniversiteit groningen, [rug], nl, [], ...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>freq</th>\n",
       "      <td>NaN</td>\n",
       "      <td>3</td>\n",
       "      <td>5067</td>\n",
       "      <td>3212</td>\n",
       "      <td>26</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>mean</th>\n",
       "      <td>4008.118801</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>2869.948770</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>min</th>\n",
       "      <td>2.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25%</th>\n",
       "      <td>1823.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50%</th>\n",
       "      <td>3361.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>75%</th>\n",
       "      <td>5095.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>max</th>\n",
       "      <td>10175.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "         opendoar_id repository_name           type              subject  \\\n",
       "count    5707.000000            5707           5707                 5707   \n",
       "unique           NaN            5670              4                  820   \n",
       "top              NaN            arch  institutional  [multidisciplinary]   \n",
       "freq             NaN               3           5067                 3212   \n",
       "mean     4008.118801             NaN            NaN                  NaN   \n",
       "std      2869.948770             NaN            NaN                  NaN   \n",
       "min         2.000000             NaN            NaN                  NaN   \n",
       "25%      1823.000000             NaN            NaN                  NaN   \n",
       "50%      3361.000000             NaN            NaN                  NaN   \n",
       "75%      5095.000000             NaN            NaN                  NaN   \n",
       "max     10175.000000             NaN            NaN                  NaN   \n",
       "\n",
       "                                              institution  \n",
       "count                                                5707  \n",
       "unique                                               5098  \n",
       "top     [[rijksuniversiteit groningen, [rug], nl, [], ...  \n",
       "freq                                                   26  \n",
       "mean                                                  NaN  \n",
       "std                                                   NaN  \n",
       "min                                                   NaN  \n",
       "25%                                                   NaN  \n",
       "50%                                                   NaN  \n",
       "75%                                                   NaN  \n",
       "max                                                   NaN  "
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "opendoar_df.describe(include='all')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**ROAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 45,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
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       "\n",
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       "\n",
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       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>eprintid</th>\n",
       "      <th>home_page</th>\n",
       "      <th>title</th>\n",
       "      <th>location_country</th>\n",
       "      <th>subjects</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>921</td>\n",
       "      <td>http://alcme.oclc.org/ndltd/index.html</td>\n",
       "      <td>Networked Digital Library of Theses and Disser...</td>\n",
       "      <td>us</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1489</td>\n",
       "      <td>http://prensahistorica.mcu.es/prensahistorica/...</td>\n",
       "      <td>Virtual Library of Historical Press</td>\n",
       "      <td>es</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>606</td>\n",
       "      <td>http://hal.archives-ouvertes.fr/</td>\n",
       "      <td>HAL: Hyper Article en Ligne</td>\n",
       "      <td>fr</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>606</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>606</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   eprintid                                          home_page  \\\n",
       "0       921             http://alcme.oclc.org/ndltd/index.html   \n",
       "1      1489  http://prensahistorica.mcu.es/prensahistorica/...   \n",
       "2       606                   http://hal.archives-ouvertes.fr/   \n",
       "3       606                                                NaN   \n",
       "4       606                                                NaN   \n",
       "\n",
       "                                               title location_country subjects  \n",
       "0  Networked Digital Library of Theses and Disser...               us      NaN  \n",
       "1                Virtual Library of Historical Press               es      NaN  \n",
       "2                        HAL: Hyper Article en Ligne               fr      NaN  \n",
       "3                                                NaN              NaN      NaN  \n",
       "4                                                NaN              NaN      NaN  "
      ]
     },
     "execution_count": 45,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roar_df = pd.read_csv('../data/raw/export_roar_CSV.csv',\n",
    "                     usecols=['eprintid', 'home_page', 'title', 'location_country', 'subjects'])\n",
    "roar_df.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 43,
   "metadata": {},
   "outputs": [],
   "source": [
    "# roar_df.drop_duplicates(subset=['home_page', 'title' , 'location_country', 'subjects'], keep=False, inplace=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>eprintid</th>\n",
       "      <th>home_page</th>\n",
       "      <th>title</th>\n",
       "      <th>location_country</th>\n",
       "      <th>subjects</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>106</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Faculty Scholarship at The Claremont Colleges</td>\n",
       "      <td>us</td>\n",
       "      <td>AS</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>107</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>BF</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>108</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>BL</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>109</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>CC</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>110</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>GN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>111</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>H1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>112</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>HB</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>113</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>JA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>114</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>LB</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>115</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NX</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>116</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>PQ</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>117</th>\n",
       "      <td>2303</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>QA</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "     eprintid home_page                                          title  \\\n",
       "106      2303       NaN  Faculty Scholarship at The Claremont Colleges   \n",
       "107      2303       NaN                                            NaN   \n",
       "108      2303       NaN                                            NaN   \n",
       "109      2303       NaN                                            NaN   \n",
       "110      2303       NaN                                            NaN   \n",
       "111      2303       NaN                                            NaN   \n",
       "112      2303       NaN                                            NaN   \n",
       "113      2303       NaN                                            NaN   \n",
       "114      2303       NaN                                            NaN   \n",
       "115      2303       NaN                                            NaN   \n",
       "116      2303       NaN                                            NaN   \n",
       "117      2303       NaN                                            NaN   \n",
       "\n",
       "    location_country subjects  \n",
       "106               us       AS  \n",
       "107              NaN       BF  \n",
       "108              NaN       BL  \n",
       "109              NaN       CC  \n",
       "110              NaN       GN  \n",
       "111              NaN       H1  \n",
       "112              NaN       HB  \n",
       "113              NaN       JA  \n",
       "114              NaN       LB  \n",
       "115              NaN       NX  \n",
       "116              NaN       PQ  \n",
       "117              NaN       QA  "
      ]
     },
     "execution_count": 47,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roar_df[roar_df.eprintid == 2303]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 44,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
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       "\n",
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>eprintid</th>\n",
       "      <th>home_page</th>\n",
       "      <th>title</th>\n",
       "      <th>location_country</th>\n",
       "      <th>subjects</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>count</th>\n",
       "      <td>5314.000000</td>\n",
       "      <td>5263</td>\n",
       "      <td>5268</td>\n",
       "      <td>5024</td>\n",
       "      <td>1225</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>unique</th>\n",
       "      <td>NaN</td>\n",
       "      <td>5156</td>\n",
       "      <td>5027</td>\n",
       "      <td>134</td>\n",
       "      <td>123</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>top</th>\n",
       "      <td>NaN</td>\n",
       "      <td>http://ir.lib.isu.edu.tw/</td>\n",
       "      <td>Repositorio Institucional</td>\n",
       "      <td>us</td>\n",
       "      <td>H1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>freq</th>\n",
       "      <td>NaN</td>\n",
       "      <td>3</td>\n",
       "      <td>7</td>\n",
       "      <td>877</td>\n",
       "      <td>147</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>mean</th>\n",
       "      <td>6389.464434</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>std</th>\n",
       "      <td>5159.573937</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>min</th>\n",
       "      <td>1.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25%</th>\n",
       "      <td>1490.250000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>50%</th>\n",
       "      <td>4990.500000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>75%</th>\n",
       "      <td>10452.750000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>max</th>\n",
       "      <td>17302.000000</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "            eprintid                  home_page                      title  \\\n",
       "count    5314.000000                       5263                       5268   \n",
       "unique           NaN                       5156                       5027   \n",
       "top              NaN  http://ir.lib.isu.edu.tw/  Repositorio Institucional   \n",
       "freq             NaN                          3                          7   \n",
       "mean     6389.464434                        NaN                        NaN   \n",
       "std      5159.573937                        NaN                        NaN   \n",
       "min         1.000000                        NaN                        NaN   \n",
       "25%      1490.250000                        NaN                        NaN   \n",
       "50%      4990.500000                        NaN                        NaN   \n",
       "75%     10452.750000                        NaN                        NaN   \n",
       "max     17302.000000                        NaN                        NaN   \n",
       "\n",
       "       location_country subjects  \n",
       "count              5024     1225  \n",
       "unique              134      123  \n",
       "top                  us       H1  \n",
       "freq                877      147  \n",
       "mean                NaN      NaN  \n",
       "std                 NaN      NaN  \n",
       "min                 NaN      NaN  \n",
       "25%                 NaN      NaN  \n",
       "50%                 NaN      NaN  \n",
       "75%                 NaN      NaN  \n",
       "max                 NaN      NaN  "
      ]
     },
     "execution_count": 44,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roar_df.describe(include='all')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**FAIRsharing**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>full_name</th>\n",
       "      <th>short_name</th>\n",
       "      <th>fs_url</th>\n",
       "      <th>url</th>\n",
       "      <th>countries</th>\n",
       "      <th>subjects</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>GenBank</td>\n",
       "      <td>GenBank</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.9...</td>\n",
       "      <td>https://www.ncbi.nlm.nih.gov/genbank/</td>\n",
       "      <td>European Union,Japan,United States</td>\n",
       "      <td>Bioinformatics,Data Management,Data Submission...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>GlycoNAVI</td>\n",
       "      <td>GlycoNAVI</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.w...</td>\n",
       "      <td>https://glyconavi.org/</td>\n",
       "      <td>Japan</td>\n",
       "      <td>Chemistry,Glycomics,Life Science,Organic Chemi...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>ADHDgene</td>\n",
       "      <td>ADHDgene</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.m...</td>\n",
       "      <td>http://adhd.psych.ac.cn/</td>\n",
       "      <td>China</td>\n",
       "      <td>Biomedical Science,Genetics</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>Allele frequency resource for research and tea...</td>\n",
       "      <td>ALFRED</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.y...</td>\n",
       "      <td>http://alfred.med.yale.edu</td>\n",
       "      <td>United States</td>\n",
       "      <td>Life Science</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>Animal Transcription Factor Database</td>\n",
       "      <td>AnimalTFDB</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.e...</td>\n",
       "      <td>http://bioinfo.life.hust.edu.cn/AnimalTFDB/</td>\n",
       "      <td>China</td>\n",
       "      <td>Life Science</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                           full_name  short_name  \\\n",
       "0                                            GenBank     GenBank   \n",
       "1                                          GlycoNAVI   GlycoNAVI   \n",
       "2                                           ADHDgene    ADHDgene   \n",
       "3  Allele frequency resource for research and tea...      ALFRED   \n",
       "4               Animal Transcription Factor Database  AnimalTFDB   \n",
       "\n",
       "                                              fs_url  \\\n",
       "0  https://fairsharing.org/10.25504/FAIRsharing.9...   \n",
       "1  https://fairsharing.org/10.25504/FAIRsharing.w...   \n",
       "2  https://fairsharing.org/10.25504/FAIRsharing.m...   \n",
       "3  https://fairsharing.org/10.25504/FAIRsharing.y...   \n",
       "4  https://fairsharing.org/10.25504/FAIRsharing.e...   \n",
       "\n",
       "                                           url  \\\n",
       "0        https://www.ncbi.nlm.nih.gov/genbank/   \n",
       "1                       https://glyconavi.org/   \n",
       "2                     http://adhd.psych.ac.cn/   \n",
       "3                   http://alfred.med.yale.edu   \n",
       "4  http://bioinfo.life.hust.edu.cn/AnimalTFDB/   \n",
       "\n",
       "                            countries  \\\n",
       "0  European Union,Japan,United States   \n",
       "1                               Japan   \n",
       "2                               China   \n",
       "3                       United States   \n",
       "4                               China   \n",
       "\n",
       "                                            subjects  \n",
       "0  Bioinformatics,Data Management,Data Submission...  \n",
       "1  Chemistry,Glycomics,Life Science,Organic Chemi...  \n",
       "2                        Biomedical Science,Genetics  \n",
       "3                                       Life Science  \n",
       "4                                       Life Science  "
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fairsharing_df = pd.read_csv('../data/raw/FAIRsharingDBrec_summary20210304.csv', \n",
    "                             delimiter='|', header=0,\n",
    "                             names=['full_name', 'short_name', 'fs_url', 'url', 'countries', 'subjects'])\n",
    "fairsharing_df.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
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       "    }\n",
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>full_name</th>\n",
       "      <th>short_name</th>\n",
       "      <th>fs_url</th>\n",
       "      <th>url</th>\n",
       "      <th>countries</th>\n",
       "      <th>subjects</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>count</th>\n",
       "      <td>1752</td>\n",
       "      <td>1752</td>\n",
       "      <td>1752</td>\n",
       "      <td>1752</td>\n",
       "      <td>1749</td>\n",
       "      <td>1690</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>unique</th>\n",
       "      <td>1752</td>\n",
       "      <td>1741</td>\n",
       "      <td>1752</td>\n",
       "      <td>1752</td>\n",
       "      <td>178</td>\n",
       "      <td>834</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>top</th>\n",
       "      <td>CiteAb</td>\n",
       "      <td>CGD</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.1...</td>\n",
       "      <td>http://www.plexdb.org/</td>\n",
       "      <td>United States</td>\n",
       "      <td>Life Science</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>freq</th>\n",
       "      <td>1</td>\n",
       "      <td>3</td>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>588</td>\n",
       "      <td>367</td>\n",
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      "text/plain": [
       "       full_name short_name  \\\n",
       "count       1752       1752   \n",
       "unique      1752       1741   \n",
       "top       CiteAb        CGD   \n",
       "freq           1          3   \n",
       "\n",
       "                                                   fs_url  \\\n",
       "count                                                1752   \n",
       "unique                                               1752   \n",
       "top     https://fairsharing.org/10.25504/FAIRsharing.1...   \n",
       "freq                                                    1   \n",
       "\n",
       "                           url      countries      subjects  \n",
       "count                     1752           1749          1690  \n",
       "unique                    1752            178           834  \n",
       "top     http://www.plexdb.org/  United States  Life Science  \n",
       "freq                         1            588           367  "
      ]
     },
     "execution_count": 12,
     "metadata": {},
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   "source": [
    "fairsharing_df.describe(include='all')"
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  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Subjects analysis"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**re3data**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [],
   "source": [
    "re3data_subjects = re3data_df.explode('subject')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [
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     },
     "metadata": {},
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    }
   ],
   "source": [
    "data = re3data_subjects.groupby('subject')[['re3data_id']].count().sort_values('re3data_id', ascending=False)\n",
    "plot = [\n",
    "    go.Bar(\n",
    "        x=data[data.index.str.contains('^\\d{%s}\\s' % tier, regex=True)].index,\n",
    "        y=data[data.index.str.contains('^\\d{%s}\\s' % tier, regex=True)]['re3data_id'],\n",
    "        name='re3data tier %s-digits' % tier\n",
    "    ) for tier in [1,2,3,5]\n",
    "] \n",
    "\n",
    "layout = go.Layout(\n",
    "    title='Subject coverage re3data',\n",
    "    xaxis=dict(tickangle=45, tickfont=dict(size=12))\n",
    ")\n",
    "\n",
    "fig = go.Figure(plot, layout).show()"
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  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**OpenDOAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {},
   "outputs": [],
   "source": [
    "opendoar_subjects = opendoar_df.explode('subject')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {},
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   ],
   "source": [
    "data = opendoar_subjects.groupby('subject')[['opendoar_id']].count().sort_values('opendoar_id', ascending=False)\n",
    "plot = [\n",
    "    go.Bar(\n",
    "        x=data.index,\n",
    "        y=data['opendoar_id'],\n",
    "    ) \n",
    "] \n",
    "\n",
    "layout = go.Layout(\n",
    "    title='Subject coverage OpenDOAR',\n",
    "    xaxis=dict(tickangle=45, tickfont=dict(size=12))\n",
    ")\n",
    "\n",
    "fig = go.Figure(plot, layout).show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**ROAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([nan, 'DP', 'Q1', 'AS', 'AC', 'AM', 'H1', 'L1', 'AI', 'GC', 'HD28',\n",
       "       'F1201', 'R1', 'QM', 'BF', 'Z665', 'B1', 'DS', 'NX', 'K1', 'G1',\n",
       "       'HA', 'D051', 'T1', 'QA', 'E151', 'D901', 'BP', 'QK', 'D1', 'HB',\n",
       "       'GE', 'QE', 'QA76', 'QC', 'LB', 'RT', 'N1', 'BQ', 'QD', 'RA0421',\n",
       "       'S1', 'LG', 'SH', 'ZA', 'LE', 'HV', 'DAW', 'C1', 'JA', 'AZ', 'QR',\n",
       "       'F001', 'QH301', 'QB', 'QL', 'TJ', 'RZ', 'RS', 'GV', 'LB2300',\n",
       "       'RF', 'RG', 'LA', 'Z004', 'HM', 'GA', 'M1', 'PI', 'BJ', 'BH', 'BC',\n",
       "       'JL', 'J1', 'RK', 'TP', 'PE', 'TL', 'P1', 'HD61', 'BL', 'RM', 'RB',\n",
       "       'QA75', 'SD', 'E11', 'HF5601', 'TA', 'D839', 'LF', 'CB', 'PG',\n",
       "       'QH', 'HC', 'Z719', 'HE', 'TK', 'HT', 'CC', 'PL', 'HF', 'ZA4050',\n",
       "       'NB', 'CT', 'HJ', 'HG', 'PD', 'JN', 'LD', 'DE', 'DF', 'DK', 'GN',\n",
       "       'JX', 'QP', 'LC', 'TC'], dtype=object)"
      ]
     },
     "execution_count": 17,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roar_df.subjects.unique()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {},
   "outputs": [
    {
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       "      <th>352</th>\n",
       "      <td>6412</td>\n",
       "      <td>https://dspace.cvut.cz/</td>\n",
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       "      <th>8164</th>\n",
       "      <td>14592</td>\n",
       "      <td>http://repository.stie-aub.ac.id</td>\n",
       "      <td>Welcome to Repository STIE AUB Surakarta - Rep...</td>\n",
       "      <td>IDN</td>\n",
       "      <td>HD28</td>\n",
       "      <td>AS</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9402</th>\n",
       "      <td>13418</td>\n",
       "      <td>http://repositorio.gerens.edu.pe/</td>\n",
       "      <td>Repositorio de la Escuela de Postgrado Gerens</td>\n",
       "      <td>PER</td>\n",
       "      <td>HD28</td>\n",
       "      <td>SA</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10929</th>\n",
       "      <td>11743</td>\n",
       "      <td>http://publikaciotar.repozitorium.uni-bge.hu/</td>\n",
       "      <td>BORY: Budapest Business School Repository</td>\n",
       "      <td>HUN</td>\n",
       "      <td>HD28</td>\n",
       "      <td>EU</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11428</th>\n",
       "      <td>11134</td>\n",
       "      <td>https://eduq.info</td>\n",
       "      <td>ÉDUQ: Archive ouverte du réseau collégial du Q...</td>\n",
       "      <td>CAN</td>\n",
       "      <td>HD28</td>\n",
       "      <td>NA</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "       eprintid                                      home_page  \\\n",
       "352        6412                        https://dspace.cvut.cz/   \n",
       "8164      14592               http://repository.stie-aub.ac.id   \n",
       "9402      13418              http://repositorio.gerens.edu.pe/   \n",
       "10929     11743  http://publikaciotar.repozitorium.uni-bge.hu/   \n",
       "11428     11134                              https://eduq.info   \n",
       "\n",
       "                                                   title location_country  \\\n",
       "352    Digital Library of the Czech Technical Univers...              CZE   \n",
       "8164   Welcome to Repository STIE AUB Surakarta - Rep...              IDN   \n",
       "9402       Repositorio de la Escuela de Postgrado Gerens              PER   \n",
       "10929          BORY: Budapest Business School Repository              HUN   \n",
       "11428  ÉDUQ: Archive ouverte du réseau collégial du Q...              CAN   \n",
       "\n",
       "      subjects continent  \n",
       "352       HD28        EU  \n",
       "8164      HD28        AS  \n",
       "9402      HD28        SA  \n",
       "10929     HD28        EU  \n",
       "11428     HD28        NA  "
      ]
     },
     "execution_count": 39,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "roar_df[roar_df.subjects == 'HD28']"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**FAIRsharing**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [],
   "source": [
    "fairsharing_subjects = fairsharing_df.explode('subjects')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.plotly.v1+json": {
       "config": {
        "plotlyServerURL": "https://plot.ly"
       },
       "data": [
        {
         "name": "FAIRsharing",
         "type": "bar",
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          "Epidemiology,Medicine",
          "Epidemiology,Meteorology,Statistics",
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          "Environmental Science,Geophysics,Oceanography,Physical Geography",
          "Environmental Science,Maritime Engineering,Meteorology,Oceanography,Transportation Planning",
          "Environmental Science,Meteorology,Oceanography,Remote Sensing",
          "Enzymology",
          "Epidemiology,Genomics,Life Science,Taxonomy,Virology",
          "Epidemiology,Genomics,Life Science,Virology",
          "Epidemiology,Global Health,Health Science,Health Services Research,Medical Informatics,Primary Health Care,Public Health,Virology",
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          "Epidemiology,Health Science,Humanities and Social Sciences,Virology",
          "Epidemiology,Human Genetics,Quantitative Genetics",
          "Epidemiology,Immunogenetics,Immunology,Life Science,Virology",
          "Epidemiology,Life Science,Microbiology",
          "Epidemiology,Life Science,Molecular biology,Systems Biology,Virology",
          "Earth Science,Marine Biology,Meteorology,Oceanography",
          "Botany,Functional Genomics,Genomics,Life Science,Plant Genetics",
          "Cheminformatics,Life Science,Pharmacogenomics,Pharmacology",
          "Atmospheric Science,Ecosystem Science,Environmental Science",
          "Atmospheric Science,Earth Science,Environmental Science,Remote Sensing",
          "Atmospheric Science,Earth Science,Environmental Science,Water Research",
          "Atmospheric Science,Earth Science,Geochemistry",
          "Atmospheric Science,Earth Science,Geochemistry,Geophysics",
          "Atmospheric Science,Earth Science,Geodesy,Geography,Hydrogeology,Meteorology",
          "Atmospheric Science,Earth Science,Geodesy,Geophysics",
          "Atmospheric Science,Earth Science,Geodesy,Geophysics,Meteorology",
          "Atmospheric Science,Earth Science,Geodesy,Marine Biology,Oceanography",
          "Atmospheric Science,Earth Science,Geography,Hydrogeology,Hydrology,Meteorology,Water Management",
          "Atmospheric Science,Earth Science,Geography,Meteorology,Oceanography",
          "Atmospheric Science,Earth Science,Geology,Geophysics,Hydrology,Oceanography",
          "Atmospheric Science,Earth Science,Geology,Natural Science,Oceanography",
          "Atmospheric Science,Earth Science,Geology,Oceanography,Paleontology",
          "Atmospheric Science,Earth Science,Geology,Oceanography,Physical Geography",
          "Atmospheric Science,Earth Science,Geophysics",
          "Atmospheric Science,Earth Science,Geophysics,Hydrology,Meteorology,Oceanography,Water Research",
          "Atmospheric Science,Earth Science,Health Science",
          "Atmospheric Science,Earth Science,Hydrogeology,Oceanography",
          "Atmospheric Science,Earth Science,Meteorology,Oceanography",
          "Atmospheric Science,Earth Science,Meteorology,Oceanography,Remote Sensing,Social Science",
          "Atmospheric Science,Earth Science,Meteorology,Soil Science",
          "Atmospheric Science,Earth Science,Environmental Science,Meteorology,Oceanography",
          "Atmospheric Science,Earth Science,Environmental Science,Hydrology,Oceanography",
          "Atmospheric Science,Earth Science,Environmental Science,Hydrology",
          "Astrophysics and Astronomy,Geochemistry",
          "Astrophysics and Astronomy,Biology,Demographics,Ecosystem Science,Humanities and Social Sciences,Marine Biology,Materials Science,Tropical Medicine,Urban Planning",
          "Astrophysics and Astronomy,Biomedical Science,Chemistry,Humanities,Life Science,Medicine,Natural Science,Physics,Social Science,Social and Behavioural Science",
          "Astrophysics and Astronomy,Cartography,Earth Science,Geodesy",
          "Astrophysics and Astronomy,Chemistry,Nanotechnology,Pharmacology",
          "Astrophysics and Astronomy,Computer Science,Culture,Data Submission, Annotation and Curation,Earth Science,Engineering Science,Environmental Science,Health Science,Life Science,Physics,Social Science",
          "Astrophysics and Astronomy,Data Management,Earth Science,Humanities and Social Sciences,Life Science",
          "Astrophysics and Astronomy,Earth Science",
          "Astrophysics and Astronomy,Earth Science,Geodesy",
          "Astrophysics and Astronomy,Earth Science,Natural Science,Physics",
          "Astrophysics and Astronomy,Natural Science,Physics",
          "Atmospheric Science,Earth Science,Environmental Science,Hydrogeology,Oceanography",
          "Atmospheric Science,Biochemistry,Biodiversity,Biology,Ecology,Genomics,Geography,Life Science,Limnology,Microbiology,Oceanography,Proteomics",
          "Atmospheric Science,Biodiversity,Earth Science,Environmental Science,Geology,Geophysics,Oceanography,Remote Sensing",
          "Atmospheric Science,Biology,Earth Science,Environmental Science,Geology,Geophysics,Life Science,Natural Science,Oceanography",
          "Atmospheric Science,Biology,Earth Science,Geophysics,Oceanography,Physics",
          "Atmospheric Science,Chemistry,Earth Science",
          "Atmospheric Science,Data Management,Engineering Science,Humanities and Social Sciences,Natural Science",
          "Atmospheric Science,Earth Science,Ecology,Geography,Geology,Geophysics,Hydrology,Water Research",
          "Atmospheric Science,Earth Science,Environmental Science,Geology,Oceanography",
          "Atmospheric Science,Earth Science,Environmental Science,Health Science,Meteorology",
          "Atmospheric Science,Earth Science,Remote Sensing",
          "Atmospheric Science,Ecosystem Science,Environmental Science,Forest Management",
          "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Environmental Science,Geology",
          "Atmospheric Science,Energy Engineering",
          "Biodiversity,Bioinformatics,Life Science",
          "Biodiversity,Biology,Earth Science,Environmental Science,Forest Management,Landscape Planning,Plant Genetics,Population Dynamics",
          "Biodiversity,Biology,Ecology,Taxonomy",
          "Biodiversity,Biomedical Science,Data Submission, Annotation and Curation,Environmental Science,Life Science,Phylogenomics,Phylogeny,Taxonomy",
          "Biodiversity,Botany,Cartography,Earth Science,Ecology,Environmental Science,Geoinformatics,Life Science,Zoology",
          "Biodiversity,Botany,Earth Science,Ecology,Forest Management,Life Science,Meteorology,Plant Ecology,Soil Science,Water Management",
          "Biodiversity,Botany,Ecology,Ecosystem Science,Forest Management,Plant Breeding",
          "Biodiversity,Botany,Ecology,Soil Science,Zoology",
          "Biodiversity,Botany,Life Science,Natural History,Paleontology",
          "Biodiversity,Botany,Natural History,Paleontology,Zoology",
          "Biodiversity,Chemistry,Earth Science,Environmental Science,Geography,Geophysics,Marine Biology,Oceanography,Taxonomy",
          "Biodiversity,Earth Science,Ecology,Economics,Ecosystem Science,Environmental Science,Marine Biology,Oceanography,Zoology",
          "Biodiversity,Earth Science,Economics,Meteorology,Water Management",
          "Biodiversity,Earth Science,Ecosystem Science,Life Science,Marine Biology,Oceanography",
          "Biodiversity,Earth Science,Environmental Science,Geography,Geophysics,Marine Biology,Oceanography,Physical Geography",
          "Biodiversity,Earth Science,Environmental Science,Geography,Marine Biology,Oceanography",
          "Biodiversity,Earth Science,Environmental Science,Geography,Marine Biology,Oceanography,Taxonomy",
          "Biodiversity,Earth Science,Environmental Science,Marine Biology,Oceanography",
          "Biodiversity,Earth Science,Environmental Science,Marine Biology,Oceanography,Taxonomy",
          "Biodiversity,Ecology",
          "Biodiversity,Ecology,Ecosystem Science,Environmental Science",
          "Biodiversity",
          "Biochemistry,Life Science,Proteomics",
          "Biochemistry,Life Science,Metabolomics,Molecular biology",
          "Biochemistry,Bioinformatics,Cheminformatics,Computational Biology,Life Science",
          "Atmospheric Science,Environmental Science,Geology,Marine Biology,Oceanography",
          "Atmospheric Science,Geology,Marine Biology,Meteorology,Remote Sensing",
          "Atmospheric Science,Geophysics,Hydrology,Meteorology,Soil Science",
          "Atmospheric Science,Meteorology",
          "Atomic, Molecular, Optical and Plasma Physics,Materials Science,Medical Physics,Physical Chemistry",
          "Biochemistry",
          "Biochemistry,Biodiversity,Bioinformatics,Biology,Earth Science,Ecology,Environmental Science,Evolutionary Biology,Geochemistry,Geography,Geology,Geophysics,Life Science,Marine Biology,Microbial Ecology,Oceanography,Population Dynamics,Population Genetics",
          "Biochemistry,Bioinformatics,Biology,Biomaterials,Biophysics,Computational Biology,Structural Biology",
          "Biochemistry,Bioinformatics,Chemical Biology,Cheminformatics,Life Science,Proteomics,Systems Biology",
          "Biochemistry,Biology,Enzymology",
          "Biochemistry,Genetics,Life Science",
          "Biochemistry,Biomedical Science,Life Science",
          "Biochemistry,Biomedical Science,Life Science,Preclinical Studies,Systems Biology",
          "Biochemistry,Cheminformatics,Chemistry,Computational Chemistry,Molecular Chemistry,Molecular Dynamics,Molecular Physical Chemistry,Molecular biology",
          "Biochemistry,Cheminformatics,Systems Biology",
          "Biochemistry,Chemistry,Organic Chemistry,Organic Molecular Chemistry",
          "Biochemistry,Data Integration,Genomics,Metabolomics,Molecular biology,Omics,Systems Biology",
          "Biochemistry,Data Integration,Life Science",
          "Biochemistry,Data Submission, Annotation and Curation,Life Science",
          "Biochemistry,Drug Discovery,Genomics,Medicinal Chemistry",
          "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Geophysics",
          "Astrophysics and Astronomy,Atmospheric Science,Earth Science,Energy Engineering,Geodesy,Geophysics,Oceanography,Remote Sensing,Water Research",
          "Cheminformatics,Life Science",
          "Agriculture,Genomics,Life Science",
          "Agriculture,Botany,Forest Management",
          "Agriculture,Botany,Genomics,Life Science,Plant Breeding",
          "Agriculture,Botany,Genomics,Life Science,Plant Breeding,Plant Genetics",
          "Agriculture,Botany,Genomics,Plant Genetics",
          "Agriculture,Botany,Life Science",
          "Agriculture,Botany,Life Science,Plant Genetics",
          "Agriculture,Comparative Genomics,Genomics",
          "Agriculture,Comparative Genomics,Life Science,Plant Breeding",
          "Agriculture,Computer Science,Earth Science,Engineering Science,Humanities,Humanities and Social Sciences,Life Science,Medicine,Natural Science,Social Science",
          "Agriculture,Criminology,Demographics,Developmental Biology,Energy Engineering,Environmental Science,Global Health,Health Science,Public Finance",
          "Agriculture,Demographics,Earth Science,Ecology,Energy Engineering,Environmental Science,Global Health,Public Health,Public Law,Water Management",
          "Agriculture,Demographics,Earth Science,Economics,Energy Engineering,Global Health,Public Health,Social Science",
          "Agriculture,Earth Science,Ecology,Environmental Science,Hydrology",
          "Agriculture,Earth Science,Energy Engineering,Geriatric Medicine,Health Science,Maritime Engineering,Oceanography",
          "Agriculture,Earth Science,Engineering Science,Environmental Science,Health Science,Humanities and Social Sciences,Natural Science",
          "Agriculture,Earth Science,Food Security,Forest Management,Soil Science",
          "Agriculture,Ecology,Population Dynamics,Remote Sensing",
          "Agriculture,Environmental Science,Social Science",
          "Agriculture,Food Security,Nutritional Science",
          "Agriculture,Forest Management,Health Science,Health Services Research,Meteorology",
          "Agriculture,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics",
          "Agriculture,Botany,Comparative Genomics,Genomics",
          "Agriculture,Biotechnology,Life Science,Nutritional Science",
          "Agriculture,Biomedical Science,Earth Science,Environmental Science,Humanities,Life Science,Natural Science",
          "Agriculture,Animal Genetics,Animal Husbandry,Animal Physiology,Aquaculture,Biology,Biomedical Science,Botany,Economics,Food Security,Genomics,Horticulture,Life Science,Nutritional Science,Plant Genetics,Soil Science,Veterinary Medicine",
          "Aerospace Engineering,Astrophysics and Astronomy",
          "Aerospace Engineering,Biology,Chemical Engineering,Data Management,Earth Science,Life Science,Mechanics",
          "Agricultural Economics,Agriculture,Business Administration,Earth Science",
          "Agricultural Economics,Economic Theory,Economic and Social History,Social Policy",
          "Agricultural Engineering,Agricultural Law,Agriculture,Animal Husbandry,Aquaculture,Biodiversity,Botany,Ecology,Entomology,Farming Systems Research,Fisheries Science,Food Security,Health Science,Nutritional Science,Pathology,Physics,Plant Anatomy,Plant Breeding,Plant Cell Biology,Rural and Agricultural Sociology",
          "Agricultural Engineering,Agriculture,Agroecology,Agronomy,Animal Husbandry,Biology,Botany,Data Management,Data Visualization,Economics,Engineering Science,Entomology,Environmental Science,Farming Systems Research,Genomics,Health Science,Hydrology,Jurisprudence,Life Science,Nutritional Science,Pathology,Physics,Rural and Agricultural Sociology,Soil Science",
          "Agriculture,Agroecology,Biodiversity,Biology,Botany,Ecosystem Science,Life Science,Taxonomy",
          "Agriculture,Agronomy,Biotechnology",
          "Agriculture,Animal Breeding,Animal Husbandry,Environmental Science,Food Security,Forest Management",
          "Agriculture,Animal Husbandry,Biodiversity,Earth Science,Economics,Energy Engineering,Environmental Science,Forest Management,Health Science,Water Research",
          "Agriculture,Biology,Life Science",
          "Agriculture,Art,Biodiversity,Biology,Chemistry,Ecology,Engineering Science,Environmental Science,Humanities,Humanities and Social Sciences,Life Science,Physics,Social Science,Veterinary Medicine",
          "Agriculture,Art,Biotechnology,Culture,Demographics,Economics,Energy Engineering,Forest Management,Global Health,Humanities and Social Sciences,Life Science,Telecommunication Engineering,Urban Planning,Water Management",
          "Agriculture,Art,Communication Science,Culture,Economics,Education Science,Environmental Science,Forest Management,Health Science,Humanities and Social Sciences,Industrial Engineering,Public Finance,Water Management",
          "Agriculture,Atmospheric Science,Biodiversity,Biology,Chemistry,Earth Science,Ecology,Environmental Science,Fisheries Science,Freshwater Science,Geophysics,Life Science,Oceanography,Paleontology",
          "Agriculture,Atmospheric Science,Biology,Botany,Chemistry,Earth Science,Environmental Science,Geochemistry,Geography,Humanities,Humanities and Social Sciences,Hydrogeology,Life Science,Mineralogy,Natural Science,Oceanography,Physics,Soil Science,Zoology",
          "Agriculture,Atmospheric Science,Biology,Botany,Earth Science,Ecology,Ecosystem Science,Environmental Science,Geophysics,Life Science,Microbial Ecology,Microbiology,Natural Science,Oceanography,Plant Ecology,Zoology",
          "Agriculture,Biodiversity,Biotechnology,Life Science,Nutritional Science,Phylogenetics",
          "Agriculture,Biodiversity,Food Security",
          "Agriculture,Biology,Genetics,Genomics,Life Science,Plant Genetics",
          "Agriculture,Genetics,Genomics,Life Science,Transcriptomics",
          "Agriculture,Genomics,Life Science,Plant Breeding,Plant Genetics",
          "Astrophysics and Astronomy,Atmospheric Science,Earth Science",
          "Agriculture,Knowledge and Information Systems,Life Science",
          "Ancient Cultures,Cartography,Earth Science,Geoinformatics,Humanities",
          "Animal Genetics",
          "Animal Genetics,Bioinformatics,Biology,Cell Biology,Cheminformatics,Database Management,Drug Metabolism,Endocrinology,Genetics,Human Genetics,Medical Informatics,Metabolomics,Microbiology,Molecular Microbiology,Molecular biology,Plant Genetics,Proteomics,Systems Biology,Transcriptomics",
          "Animal Genetics,Genetics,Genomics,Life Science",
          "Animal Genetics,Genetics,Life Science",
          "Animal Genetics,Genetics,Life Science,Systems Biology",
          "Animal Genetics,Life Science",
          "Animal Genetics,Pathology",
          "Anthropology,Classical Archaeology,Data Integration,Data Management",
          "Anthropology,Criminology,Data Governance,Data Management,Data Submission, Annotation and Curation,Demographics,Economics,Political Science,Psychology,Public Health,Social Science,Social and Behavioural Science",
          "Anthropology,Cultural Studies,Culture,Historical Linguistics,Human Geography,Linguistics",
          "Anthropology,Fine Arts,Geography,History,Humanities and Social Sciences,Life Science,Literary Studies,Political Science,Psychology,Social Science",
          "Applied Linguistics,Classical Philology,Historical Linguistics,Linguistics",
          "Applied Mathematics,Biology,Biotechnology,Communication Science,Computer Science,Data Management,Earth Science,Economics,Education Science,Environmental Science,Humanities and Social Sciences,Materials Science,Medicine,Physics,Psychology,Statistics,Surgery",
          "Applied Microbiology,Data Integration,Data Management,Data Quality,Data Submission, Annotation and Curation,Microbial Ecology,Microbial Physiology,Proteomics,Transcriptomics",
          "Aquaculture,Earth Science,Geography,Maritime Engineering",
          "Architecture,Bioengineering,Civil Engineering,Computer Science,Earth Science,Economics,Environmental Science,Health Science,Humanities and Social Sciences,Life Science,Mathematics,Physics,Political Science",
          "Architecture,Building Engineering Physics,Chemistry,Construction Engineering,Earth Science,Economics,Energy Engineering,Engineering Science,Environmental Science,Geography,Physics,Power Engineering",
          "Art,Art History,Culture,Economics,Fine Arts,Humanities,Social Science",
          "Artificial Intelligence,Biomedical Science,Digital Image Processing,Oncology,Radiology",
          "Astrophysics and Astronomy,Atmospheric Science,Chemistry",
          "Ancient Cultures,Architecture,Art History,Astrophysics and Astronomy,Chemistry,Classical Archaeology,Earth Science,History of Science,Humanities,Linguistics,Philosophy,Prehistory,Religious Studies",
          "Anatomy,Endocrinology,Genetics,Life Science",
          "Anatomy,Developmental Biology,Embryology,Life Science",
          "Analytical Chemistry,Biology,Chemistry,Engineering Science,Life Science,Physics,Synthetic Chemistry",
          "Agriculture,Life Science,Ontology and Terminology",
          "Agriculture,Plant Breeding,Plant Cultivation",
          "Agriculture,Soil Science",
          "Agriculture,Soil Science,Urban Planning",
          "Agroecology,Biodiversity,Ecology,Genomics,Metagenomics,Microbial Ecology,Phylogenomics",
          "Agronomy,Bioinformatics,Botany,Genetics,Genomics,Life Science",
          "Agronomy,Botany,Genetics,Life Science,Plant Genetics",
          "Analytical Chemistry",
          "Analytical Chemistry,Biology,Chemistry,Composite Materials,Materials Engineering,Materials Informatics,Nanotechnology,Occupational Medicine,Safety Science,Toxicogenomics,Toxicology",
          "Analytical Chemistry,Biomimetic Chemistry,Chemistry,Inorganic Molecular Chemistry,Medicinal Chemistry,Molecular Chemistry,Organic Chemistry,Synthesis Chemistry,Synthetic Chemistry,Technical Chemistry",
          "Anatomy,Comparative Genomics,Life Science",
          "Analytical Chemistry,Drug Metabolism,Environmental Science,Metabolomics",
          "Anatomy",
          "Anatomy,Behavioural Biology,Biodiversity,Biology,Evolutionary Biology,Paleontology,Phylogenetics,Phylogeny",
          "Anatomy,Bioinformatics,Comparative Genomics,Data Submission, Annotation and Curation,Functional Genomics,Genetics,Genomics,Life Science,Molecular Genetics,Molecular biology",
          "Anatomy,Biomedical Science,Comparative Genomics,Environmental Science,Systems Biology,Toxicogenomics,Toxicology",
          "Anatomy,Biomedical Science,Life Science",
          "Anatomy,Cell Biology,Developmental Biology,Functional Genomics,Genetics,Genomics,Proteomics",
          "Anatomy,Comparative Genomics,Developmental Biology,Embryology,Epigenomics,Functional Genomics,Genomics,Life Science,Ontology and Terminology,Phylogenomics,Transcriptomics",
          "Anatomy,Comparative Genomics,Functional Genomics,Life Science",
          "Biodiversity,Ecology,Evolutionary Biology,Genetics,Oceanography",
          "Biodiversity,Environmental Science",
          "Biodiversity,Environmental Science,Marine Biology",
          "Biomedical Science,Life Science,Transcriptomics",
          "Biomedical Science,Genomics,Life Science,Proteomics,Transcriptomics",
          "Biomedical Science,Genomics,Medicine,Phenomics",
          "Biomedical Science,Genomics,Preclinical Studies",
          "Biomedical Science,Genomics,Preclinical Studies,Proteomics",
          "Biomedical Science,Genomics,Structural Biology,Structural Genomics",
          "Biomedical Science,Glycomics,Health Science",
          "Biomedical Science,Glycomics,Life Science",
          "Biomedical Science,Health Science,Humanities,Life Science,Social Science,Social and Behavioural Science",
          "Biomedical Science,Health Science,Life Science,Medicine",
          "Biomedical Science,Health Science,Medicine,Preclinical Studies",
          "Biomedical Science,Health Science,Oncology",
          "Biomedical Science,Human Genetics,Medicine,Ophthalmology,Preclinical Studies",
          "Biomedical Science,Immunology",
          "Biomedical Science,Immunology,Life Science",
          "Biomedical Science,Immunology,Life Science,Preclinical Studies",
          "Biomedical Science,Life Science,Mathematics,Physiology,Systems Biology",
          "Biomedical Science,Life Science,Neurobiology,Neuroscience",
          "Biomedical Science,Life Science,Oncology",
          "Biomedical Science,Life Science,Population Genetics",
          "Biomedical Science,Life Science,Preclinical Studies",
          "Biomedical Science,Life Science,Preclinical Studies,Proteomics",
          "Biomedical Science,Genomics,Life Science,Proteomics",
          "Biomedical Science,Genomics,Geriatric Medicine",
          "Biomedical Science,Genetics,Preclinical Studies,Proteomics",
          "Biomedical Science,Epidemiology,Life Science,Molecular biology",
          "Biomedical Science,Ecology,Epidemiology,Life Science,Preclinical Studies",
          "Biomedical Science,Endocrinology,Life Science,Systems Biology",
          "Biomedical Science,Epidemiology,Genomics",
          "Biomedical Science,Epidemiology,Genomics,Life Science,Proteomics,Virology",
          "Biomedical Science,Epidemiology,Genomics,Medicine,Preclinical Studies",
          "Biomedical Science,Epidemiology,Genomics,Proteomics,Virology",
          "Biomedical Science,Epidemiology,Global Health,Health Science,Medicine",
          "Biomedical Science,Epidemiology,Health Science,Virology",
          "Biomedical Science,Epidemiology,Life Science",
          "Biomedical Science,Epidemiology,Life Science,Virology",
          "Biomedical Science,Genetics,Life Science,Oncology,Preclinical Studies",
          "Biomedical Science,Epidemiology,Preclinical Studies",
          "Biomedical Science,Epidemiology,Translational Medicine,Virology",
          "Biomedical Science,Epigenetics,Functional Genomics,Life Science",
          "Biomedical Science,Epigenetics,Genetics",
          "Biomedical Science,Epigenetics,Life Science",
          "Biomedical Science,Epigenetics,Life Science,Population Genetics,Transcriptomics",
          "Biomedical Science,Evolutionary Biology",
          "Biomedical Science,Functional Genomics,Genomics,Life Science",
          "Biomedical Science,Genetics,Life Science,Medicine",
          "Biomedical Science,Life Science,Systems Biology",
          "Biomedical Science,Medical Informatics,Medicine",
          "Biodiversity,Environmental Science,Marine Biology,Oceanography",
          "Biomedical Science,Medicine",
          "Botany,Genetics,Life Science",
          "Botany,Life Science,Ontology and Terminology,Plant Anatomy",
          "Botany,Life Science,Plant Anatomy",
          "Botany,Life Science,Plant Breeding,Population Genetics",
          "Botany,Life Science,Plant Genetics",
          "Botany,Paleontology,Plant Anatomy",
          "Botany,Plant Genetics",
          "Botany,Plant Genetics,Transcriptomics",
          "Botany,Taxonomy",
          "Business Administration,Chemistry,Clinical Psychology,Computer Science,Education Science,Engineering Science,Geography,History,Life Science,Medicine,Physics,Policy,Psychology,Research on Teaching, Learning and Training",
          "Cardiology,Clinical Studies,Community Care,Epidemiology,Genomics,Global Health,Health Science,Health Services Research,Medical Virology,Occupational Medicine,Primary Health Care,Public Health,Reproductive Health,Respiratory Medicine,Virology",
          "Cardiology,Clinical Studies,Critical Care Medicine,Health Science,Infectious Disease Medicine,Medical Virology,Medicine,Respiratory Medicine",
          "Cardiology,Clinical Studies,Health Science,Infectious Disease Medicine,Medical Virology,Medicine",
          "Cardiology,Genetics",
          "Cartography,Earth Science,Environmental Science,Photogrammetry,Physical Geography,Remote Sensing",
          "Cartography,Earth Science,Geography,Remote Sensing",
          "Cell Biology,Developmental Biology,Molecular Dynamics",
          "Cell Biology,Life Science",
          "Cell Biology,Life Science,Transcriptomics",
          "Cellular Neuroscience,Comparative Neurobiology,Molecular Neuroscience,Neurobiology,Neurophysiology",
          "Chemical Engineering,Chemistry,Thermodynamics",
          "Botany,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics",
          "Aerospace Engineering,Agricultural Engineering,Agriculture,Architecture,Atmospheric Science,Bioengineering,Biological Process Engineering,Biology,Building Design,Building Engineering Physics,Business Administration,Chemical Engineering,Chemistry,Civil Engineering,Component Engineering,Computer Science,Construction Engineering,Earth Science,Electrical Engineering,Energy Engineering,Engineering Science,Environmental Science,Food Process Engineering,Geography,Health Science,Human-Machine Systems Engineering,Hydraulic Engineering,Hydrology,Industrial Engineering,Informatics,Life Science,Logistics Engineering,Maritime Engineering,Materials Engineering,Mathematics,Mechanical Engineering,Mechanical Process Engineering,Metal-Cutting Manufacturing Engineering,Nanotechnology,Physics,Plastics Engineering,Power Engineering,Process Engineering,Water Research",
          "Botany,Entomology,Geochemistry,Life Science,Natural History,Paleontology,Zoology",
          "Biomedical Science,Oncology",
          "Biomedical Science,Medicine,Neurobiology,Translational Medicine",
          "Biomedical Science,Medicine,Preclinical Studies",
          "Biomedical Science,Medicine,Translational Medicine",
          "Biomedical Science,Molecular biology",
          "Biomedical Science,Nanotechnology",
          "Biomedical Science,Neurobiology,Neurophysiology",
          "Biomedical Science,Neurobiology,Neuroscience",
          "Biomedical Science,Neurobiology,Preclinical Studies",
          "Biomedical Science,Neuroscience",
          "Biomedical Science,Pathology,Toxicogenomics",
          "Botany,Data Visualization,Genomics,Life Science",
          "Biomedical Science,Physiology",
          "Biomedical Science,Physiology,Preclinical Studies",
          "Biomedical Science,Preclinical Studies,Psychology,Social and Behavioural Science",
          "Biomedical Science,Proteomics",
          "Biomedical Science,Public Health,Social Science,Social and Behavioural Science",
          "Biomedical Science,Social Science",
          "Biomedical Science,Translational Medicine",
          "Biotherapeutics,Structural Biology",
          "Botany,Data Management",
          "Biomedical Science,Earth Science,Environmental Science,Life Science,Traditional Medicine",
          "Biomedical Science,Earth Science,Environmental Science,Epidemiology,Life Science,Virology",
          "Biomedical Science,Drug Repositioning,Epidemiology,Life Science,Virology",
          "Biomedical Science,Drug Metabolism,Medical Informatics,Medicine",
          "Bioinformatics,Data Management,Data Submission, Annotation and Curation,Epidemiology,Functional Genomics,Genomics,Metagenomics,Transcriptomics,Virology",
          "Bioinformatics,Data Management,Epidemiology,Functional Genomics,Genomics,Life Science,Metagenomics,Virology",
          "Bioinformatics,Data Submission, Annotation and Curation,Epigenomics,Genetics,Genomics,Knowledge and Information Systems,Life Science,Metagenomics,Omics,Transcriptomics",
          "Bioinformatics,Data Visualization,Functional Genomics,Genomics,Life Science,Phylogenetics",
          "Bioinformatics,Data Visualization,Functional Genomics,Life Science",
          "Bioinformatics,Enzymology",
          "Bioinformatics,Epigenetics,Genomics,Life Science",
          "Bioinformatics,Epigenomics",
          "Bioinformatics,Functional Genomics,Life Science",
          "Bioinformatics,Functional Genomics,Transcriptomics",
          "Bioinformatics,Genetics,Transcriptomics",
          "Bioinformatics,Genomics",
          "Bioinformatics,Genomics,Life Science,Ontology and Terminology",
          "Bioinformatics,Immunology,Life Science",
          "Bioinformatics,Life Science,Microbiology,Phylogenetics",
          "Bioinformatics,Microbiology",
          "Bioinformatics,Molecular Genetics,Molecular biology",
          "Bioinformatics,Proteomics",
          "Bioinformatics,Proteomics,Transcriptomics",
          "Bioinformatics,Software Engineering",
          "Bioinformatics,Systems Biology",
          "Bioinformatics,Computational Biology,Life Science,Systems Biology",
          "Bioinformatics,Computational Biology,Life Science,Metabolomics,Proteomics,Transcriptomics",
          "Bioinformatics,Computational Biology,Genomics",
          "Bioengineering,Biomedical Science,Computational Biology,Computer Science,Neurobiology,Neuroscience",
          "Biodiversity,Freshwater Science,Life Science",
          "Biodiversity,Life Science,Microbiology",
          "Biodiversity,Life Science,Natural History",
          "Biodiversity,Life Science,Oceanography",
          "Biodiversity,Life Science,Phylogeny",
          "Biodiversity,Life Science,Tropical Medicine",
          "Biodiversity,Natural History",
          "Biodiversity,Population Genetics",
          "Biodiversity,Taxonomy",
          "Bioengineering,Genetics",
          "Bioinformatics,Comparative Genomics,Oncology,Translational Medicine",
          "Bioengineering,Synthetic Biology",
          "Bioinformatics,Biological Psychology,Computational Neuroscience,Epigenomics,Life Science,Neuroscience",
          "Bioinformatics,Biology,Data Integration,Data Submission, Annotation and Curation,Genetics,Life Science,Molecular Genetics",
          "Bioinformatics,Biomedical Science,Genomics,Life Science",
          "Bioinformatics,Biomedical Science,Health Science,Immunogenetics,Medicine",
          "Bioinformatics,Biomedical Science,Life Science",
          "Bioinformatics,Biotechnology,Data Management,Life Science,Metabolomics,Microbiology,Molecular biology,Proteomics,Systems Biology,Transcriptomics",
          "Bioinformatics,Botany,Genetics,Plant Anatomy,Plant Genetics",
          "Bioinformatics,Cell Biology,Developmental Biology,Life Science",
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\"Agriculture,Earth Science,Energy Engineering,Geriatric Medicine,Health Science,Maritime Engineering,Oceanography\", \"Agriculture,Earth Science,Engineering Science,Environmental Science,Health Science,Humanities and Social Sciences,Natural Science\", \"Agriculture,Earth Science,Food Security,Forest Management,Soil Science\", \"Agriculture,Ecology,Population Dynamics,Remote Sensing\", \"Agriculture,Environmental Science,Social Science\", \"Agriculture,Food Security,Nutritional Science\", \"Agriculture,Forest Management,Health Science,Health Services Research,Meteorology\", \"Agriculture,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics\", \"Agriculture,Botany,Comparative Genomics,Genomics\", \"Agriculture,Biotechnology,Life Science,Nutritional Science\", \"Agriculture,Biomedical Science,Earth Science,Environmental Science,Humanities,Life Science,Natural Science\", \"Agriculture,Animal Genetics,Animal Husbandry,Animal Physiology,Aquaculture,Biology,Biomedical Science,Botany,Economics,Food Security,Genomics,Horticulture,Life Science,Nutritional Science,Plant Genetics,Soil Science,Veterinary Medicine\", \"Aerospace Engineering,Astrophysics and Astronomy\", \"Aerospace Engineering,Biology,Chemical Engineering,Data Management,Earth Science,Life Science,Mechanics\", \"Agricultural Economics,Agriculture,Business Administration,Earth Science\", \"Agricultural Economics,Economic Theory,Economic and Social History,Social Policy\", \"Agricultural Engineering,Agricultural Law,Agriculture,Animal Husbandry,Aquaculture,Biodiversity,Botany,Ecology,Entomology,Farming Systems Research,Fisheries Science,Food Security,Health Science,Nutritional Science,Pathology,Physics,Plant Anatomy,Plant Breeding,Plant Cell Biology,Rural and Agricultural Sociology\", \"Agricultural Engineering,Agriculture,Agroecology,Agronomy,Animal Husbandry,Biology,Botany,Data Management,Data Visualization,Economics,Engineering Science,Entomology,Environmental Science,Farming Systems 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Genetics,Pathology\", \"Anthropology,Classical Archaeology,Data Integration,Data Management\", \"Anthropology,Criminology,Data Governance,Data Management,Data Submission, Annotation and Curation,Demographics,Economics,Political Science,Psychology,Public Health,Social Science,Social and Behavioural Science\", \"Anthropology,Cultural Studies,Culture,Historical Linguistics,Human Geography,Linguistics\", \"Anthropology,Fine Arts,Geography,History,Humanities and Social Sciences,Life Science,Literary Studies,Political Science,Psychology,Social Science\", \"Applied Linguistics,Classical Philology,Historical Linguistics,Linguistics\", \"Applied Mathematics,Biology,Biotechnology,Communication Science,Computer Science,Data Management,Earth Science,Economics,Education Science,Environmental Science,Humanities and Social Sciences,Materials Science,Medicine,Physics,Psychology,Statistics,Surgery\", \"Applied Microbiology,Data Integration,Data Management,Data Quality,Data Submission, Annotation and 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\"Anatomy,Endocrinology,Genetics,Life Science\", \"Anatomy,Developmental Biology,Embryology,Life Science\", \"Analytical Chemistry,Biology,Chemistry,Engineering Science,Life Science,Physics,Synthetic Chemistry\", \"Agriculture,Life Science,Ontology and Terminology\", \"Agriculture,Plant Breeding,Plant Cultivation\", \"Agriculture,Soil Science\", \"Agriculture,Soil Science,Urban Planning\", \"Agroecology,Biodiversity,Ecology,Genomics,Metagenomics,Microbial Ecology,Phylogenomics\", \"Agronomy,Bioinformatics,Botany,Genetics,Genomics,Life Science\", \"Agronomy,Botany,Genetics,Life Science,Plant Genetics\", \"Analytical Chemistry\", \"Analytical Chemistry,Biology,Chemistry,Composite Materials,Materials Engineering,Materials Informatics,Nanotechnology,Occupational Medicine,Safety Science,Toxicogenomics,Toxicology\", \"Analytical Chemistry,Biomimetic Chemistry,Chemistry,Inorganic Molecular Chemistry,Medicinal Chemistry,Molecular Chemistry,Organic Chemistry,Synthesis Chemistry,Synthetic Chemistry,Technical Chemistry\", \"Anatomy,Comparative Genomics,Life Science\", \"Analytical Chemistry,Drug Metabolism,Environmental Science,Metabolomics\", \"Anatomy\", \"Anatomy,Behavioural Biology,Biodiversity,Biology,Evolutionary Biology,Paleontology,Phylogenetics,Phylogeny\", \"Anatomy,Bioinformatics,Comparative Genomics,Data Submission, Annotation and Curation,Functional Genomics,Genetics,Genomics,Life Science,Molecular Genetics,Molecular biology\", \"Anatomy,Biomedical Science,Comparative Genomics,Environmental Science,Systems Biology,Toxicogenomics,Toxicology\", \"Anatomy,Biomedical Science,Life Science\", \"Anatomy,Cell Biology,Developmental Biology,Functional Genomics,Genetics,Genomics,Proteomics\", \"Anatomy,Comparative Genomics,Developmental Biology,Embryology,Epigenomics,Functional Genomics,Genomics,Life Science,Ontology and Terminology,Phylogenomics,Transcriptomics\", \"Anatomy,Comparative Genomics,Functional Genomics,Life Science\", \"Biodiversity,Ecology,Evolutionary Biology,Genetics,Oceanography\", \"Biodiversity,Environmental Science\", \"Biodiversity,Environmental Science,Marine Biology\", \"Biomedical Science,Life Science,Transcriptomics\", \"Biomedical Science,Genomics,Life Science,Proteomics,Transcriptomics\", \"Biomedical Science,Genomics,Medicine,Phenomics\", \"Biomedical Science,Genomics,Preclinical Studies\", \"Biomedical Science,Genomics,Preclinical Studies,Proteomics\", \"Biomedical Science,Genomics,Structural Biology,Structural Genomics\", \"Biomedical Science,Glycomics,Health Science\", \"Biomedical Science,Glycomics,Life Science\", \"Biomedical Science,Health Science,Humanities,Life Science,Social Science,Social and Behavioural Science\", \"Biomedical Science,Health Science,Life Science,Medicine\", \"Biomedical Science,Health Science,Medicine,Preclinical Studies\", \"Biomedical Science,Health Science,Oncology\", \"Biomedical Science,Human Genetics,Medicine,Ophthalmology,Preclinical Studies\", \"Biomedical Science,Immunology\", \"Biomedical Science,Immunology,Life Science\", \"Biomedical Science,Immunology,Life Science,Preclinical Studies\", \"Biomedical Science,Life Science,Mathematics,Physiology,Systems Biology\", \"Biomedical Science,Life Science,Neurobiology,Neuroscience\", \"Biomedical Science,Life Science,Oncology\", \"Biomedical Science,Life Science,Population Genetics\", \"Biomedical Science,Life Science,Preclinical Studies\", \"Biomedical Science,Life Science,Preclinical Studies,Proteomics\", \"Biomedical Science,Genomics,Life Science,Proteomics\", \"Biomedical Science,Genomics,Geriatric Medicine\", \"Biomedical Science,Genetics,Preclinical Studies,Proteomics\", \"Biomedical Science,Epidemiology,Life Science,Molecular biology\", \"Biomedical Science,Ecology,Epidemiology,Life Science,Preclinical Studies\", \"Biomedical Science,Endocrinology,Life Science,Systems Biology\", \"Biomedical Science,Epidemiology,Genomics\", \"Biomedical Science,Epidemiology,Genomics,Life Science,Proteomics,Virology\", \"Biomedical Science,Epidemiology,Genomics,Medicine,Preclinical Studies\", \"Biomedical Science,Epidemiology,Genomics,Proteomics,Virology\", \"Biomedical Science,Epidemiology,Global Health,Health Science,Medicine\", \"Biomedical Science,Epidemiology,Health Science,Virology\", \"Biomedical Science,Epidemiology,Life Science\", \"Biomedical Science,Epidemiology,Life Science,Virology\", \"Biomedical Science,Genetics,Life Science,Oncology,Preclinical Studies\", \"Biomedical Science,Epidemiology,Preclinical Studies\", \"Biomedical Science,Epidemiology,Translational Medicine,Virology\", \"Biomedical Science,Epigenetics,Functional Genomics,Life Science\", \"Biomedical Science,Epigenetics,Genetics\", \"Biomedical Science,Epigenetics,Life Science\", \"Biomedical Science,Epigenetics,Life Science,Population Genetics,Transcriptomics\", \"Biomedical Science,Evolutionary Biology\", \"Biomedical Science,Functional Genomics,Genomics,Life Science\", \"Biomedical Science,Genetics,Life Science,Medicine\", \"Biomedical Science,Life Science,Systems Biology\", \"Biomedical Science,Medical Informatics,Medicine\", \"Biodiversity,Environmental Science,Marine Biology,Oceanography\", \"Biomedical Science,Medicine\", \"Botany,Genetics,Life Science\", \"Botany,Life Science,Ontology and Terminology,Plant Anatomy\", \"Botany,Life Science,Plant Anatomy\", \"Botany,Life Science,Plant Breeding,Population Genetics\", \"Botany,Life Science,Plant Genetics\", \"Botany,Paleontology,Plant Anatomy\", \"Botany,Plant Genetics\", \"Botany,Plant Genetics,Transcriptomics\", \"Botany,Taxonomy\", \"Business Administration,Chemistry,Clinical Psychology,Computer Science,Education Science,Engineering Science,Geography,History,Life Science,Medicine,Physics,Policy,Psychology,Research on Teaching, Learning and Training\", \"Cardiology,Clinical Studies,Community Care,Epidemiology,Genomics,Global Health,Health Science,Health Services Research,Medical Virology,Occupational Medicine,Primary Health Care,Public Health,Reproductive Health,Respiratory Medicine,Virology\", \"Cardiology,Clinical Studies,Critical Care Medicine,Health Science,Infectious Disease Medicine,Medical Virology,Medicine,Respiratory Medicine\", \"Cardiology,Clinical Studies,Health Science,Infectious Disease Medicine,Medical Virology,Medicine\", \"Cardiology,Genetics\", \"Cartography,Earth Science,Environmental Science,Photogrammetry,Physical Geography,Remote Sensing\", \"Cartography,Earth Science,Geography,Remote Sensing\", \"Cell Biology,Developmental Biology,Molecular Dynamics\", \"Cell Biology,Life Science\", \"Cell Biology,Life Science,Transcriptomics\", \"Cellular Neuroscience,Comparative Neurobiology,Molecular Neuroscience,Neurobiology,Neurophysiology\", \"Chemical Engineering,Chemistry,Thermodynamics\", \"Botany,Genetics,Genomics,Life Science,Plant Breeding,Plant Genetics\", \"Aerospace Engineering,Agricultural Engineering,Agriculture,Architecture,Atmospheric Science,Bioengineering,Biological Process Engineering,Biology,Building Design,Building Engineering Physics,Business Administration,Chemical Engineering,Chemistry,Civil Engineering,Component Engineering,Computer Science,Construction Engineering,Earth Science,Electrical Engineering,Energy Engineering,Engineering Science,Environmental Science,Food Process Engineering,Geography,Health Science,Human-Machine Systems Engineering,Hydraulic Engineering,Hydrology,Industrial Engineering,Informatics,Life Science,Logistics Engineering,Maritime Engineering,Materials Engineering,Mathematics,Mechanical Engineering,Mechanical Process Engineering,Metal-Cutting Manufacturing Engineering,Nanotechnology,Physics,Plastics Engineering,Power Engineering,Process Engineering,Water Research\", \"Botany,Entomology,Geochemistry,Life Science,Natural History,Paleontology,Zoology\", \"Biomedical Science,Oncology\", \"Biomedical Science,Medicine,Neurobiology,Translational Medicine\", \"Biomedical Science,Medicine,Preclinical Studies\", \"Biomedical 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).then(function(){\n",
       "                            \n",
       "var gd = document.getElementById('2cda32ef-3158-4505-8c17-b37ad66f7d04');\n",
       "var x = new MutationObserver(function (mutations, observer) {{\n",
       "        var display = window.getComputedStyle(gd).display;\n",
       "        if (!display || display === 'none') {{\n",
       "            console.log([gd, 'removed!']);\n",
       "            Plotly.purge(gd);\n",
       "            observer.disconnect();\n",
       "        }}\n",
       "}});\n",
       "\n",
       "// Listen for the removal of the full notebook cells\n",
       "var notebookContainer = gd.closest('#notebook-container');\n",
       "if (notebookContainer) {{\n",
       "    x.observe(notebookContainer, {childList: true});\n",
       "}}\n",
       "\n",
       "// Listen for the clearing of the current output cell\n",
       "var outputEl = gd.closest('.output');\n",
       "if (outputEl) {{\n",
       "    x.observe(outputEl, {childList: true});\n",
       "}}\n",
       "\n",
       "                        })                };                });            </script>        </div>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data = fairsharing_subjects.groupby('subjects')[['url']].count().sort_values('url', ascending=False)\n",
    "plot = [\n",
    "    go.Bar(\n",
    "        x=data.index,\n",
    "        y=data['url'],\n",
    "        name='FAIRsharing'\n",
    "    )\n",
    "]\n",
    "\n",
    "layout = go.Layout(\n",
    "    title='Subject coverage FAIRsharing',\n",
    "    xaxis=dict(tickangle=45, tickfont=dict(size=12))\n",
    ")\n",
    "\n",
    "fig = go.Figure(plot, layout).show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Geographic analysis"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**re3data**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "    .dataframe tbody tr th:only-of-type {\n",
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       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>re3data_id</th>\n",
       "      <th>institution</th>\n",
       "      <th>org_name</th>\n",
       "      <th>org_other_names</th>\n",
       "      <th>org_country</th>\n",
       "      <th>org_3</th>\n",
       "      <th>org_noprofit</th>\n",
       "      <th>org_url</th>\n",
       "      <th>org_ids</th>\n",
       "      <th>org_date1</th>\n",
       "      <th>org_date2</th>\n",
       "      <th>org_contact</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>r3d100000001</td>\n",
       "      <td>[Odum Institute for Research in Social Science...</td>\n",
       "      <td>Odum Institute for Research in Social Science</td>\n",
       "      <td>[]</td>\n",
       "      <td>USA</td>\n",
       "      <td>[general]</td>\n",
       "      <td>non-profit</td>\n",
       "      <td>https://odum.unc.edu/archive/</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>r3d100000002</td>\n",
       "      <td>[The U.S. National Archives and Records Admini...</td>\n",
       "      <td>The U.S. National Archives and Records Adminis...</td>\n",
       "      <td>[NARA, National Archives]</td>\n",
       "      <td>USA</td>\n",
       "      <td>[general]</td>\n",
       "      <td>non-profit</td>\n",
       "      <td>http://www.archives.gov/</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[http://www.archives.gov/contact/]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>r3d100000002</td>\n",
       "      <td>[The USA.gov, [], USA, [general], non-profit, ...</td>\n",
       "      <td>The USA.gov</td>\n",
       "      <td>[]</td>\n",
       "      <td>USA</td>\n",
       "      <td>[general]</td>\n",
       "      <td>non-profit</td>\n",
       "      <td>http://www.usa.gov/</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[http://www.usa.gov/Contact.shtml]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>r3d100000004</td>\n",
       "      <td>[Institut für Deutsche Sprache, Archiv für Ges...</td>\n",
       "      <td>Institut für Deutsche Sprache, Archiv für Gesp...</td>\n",
       "      <td>[AGD]</td>\n",
       "      <td>DEU</td>\n",
       "      <td>[funding, general]</td>\n",
       "      <td>non-profit</td>\n",
       "      <td>http://agd.ids-mannheim.de/index.shtml</td>\n",
       "      <td>[]</td>\n",
       "      <td>2004</td>\n",
       "      <td></td>\n",
       "      <td>[agd@ids-mannheim.de]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>r3d100000005</td>\n",
       "      <td>[Odum Institute for Research in Social Science...</td>\n",
       "      <td>Odum Institute for Research in Social Science</td>\n",
       "      <td>[]</td>\n",
       "      <td>USA</td>\n",
       "      <td>[technical]</td>\n",
       "      <td>non-profit</td>\n",
       "      <td>https://odum.unc.edu/</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[https://odum.unc.edu/contact/contact-form/, o...</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "     re3data_id                                        institution  \\\n",
       "0  r3d100000001  [Odum Institute for Research in Social Science...   \n",
       "1  r3d100000002  [The U.S. National Archives and Records Admini...   \n",
       "2  r3d100000002  [The USA.gov, [], USA, [general], non-profit, ...   \n",
       "3  r3d100000004  [Institut für Deutsche Sprache, Archiv für Ges...   \n",
       "4  r3d100000005  [Odum Institute for Research in Social Science...   \n",
       "\n",
       "                                            org_name  \\\n",
       "0      Odum Institute for Research in Social Science   \n",
       "1  The U.S. National Archives and Records Adminis...   \n",
       "2                                        The USA.gov   \n",
       "3  Institut für Deutsche Sprache, Archiv für Gesp...   \n",
       "4      Odum Institute for Research in Social Science   \n",
       "\n",
       "             org_other_names org_country               org_3 org_noprofit  \\\n",
       "0                         []         USA           [general]   non-profit   \n",
       "1  [NARA, National Archives]         USA           [general]   non-profit   \n",
       "2                         []         USA           [general]   non-profit   \n",
       "3                      [AGD]         DEU  [funding, general]   non-profit   \n",
       "4                         []         USA         [technical]   non-profit   \n",
       "\n",
       "                                  org_url org_ids org_date1 org_date2  \\\n",
       "0           https://odum.unc.edu/archive/      []                       \n",
       "1                http://www.archives.gov/      []                       \n",
       "2                     http://www.usa.gov/      []                       \n",
       "3  http://agd.ids-mannheim.de/index.shtml      []      2004             \n",
       "4                   https://odum.unc.edu/      []                       \n",
       "\n",
       "                                         org_contact  \n",
       "0                                                 []  \n",
       "1                 [http://www.archives.gov/contact/]  \n",
       "2                 [http://www.usa.gov/Contact.shtml]  \n",
       "3                              [agd@ids-mannheim.de]  \n",
       "4  [https://odum.unc.edu/contact/contact-form/, o...  "
      ]
     },
     "execution_count": 21,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "re3data_institutions = re3data_df.explode('institution')[['re3data_id', 'institution']]\n",
    "re3data_institutions = re3data_institutions[~re3data_institutions.institution.isna()].reset_index(drop=True)\n",
    "re3data_institutions = re3data_institutions.join(pd.DataFrame(re3data_institutions.institution.to_list(), columns=['org_name', 'org_other_names', \n",
    "                                                                                              'org_country', 'org_3', 'org_noprofit', \n",
    "                                                                                              'org_url', 'org_ids', 'org_date1', \n",
    "                                                                                              'org_date2', 'org_contact']))\n",
    "re3data_institutions.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [],
   "source": [
    "re3data_institutions['org_continent'] = re3data_institutions.org_country.map(countrycode_to_continent)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['AAA', 'EEC'], dtype=object)"
      ]
     },
     "execution_count": 23,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "re3data_institutions[re3data_institutions.org_continent.isna()].org_country.unique()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "AAA is used for international collaborations; we skip this.\n",
    "EEC is used for the EU commission; we fix the continent manually."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {},
   "outputs": [],
   "source": [
    "re3data_institutions.loc[re3data_institutions.org_country == 'EEC', 'org_continent'] = 'EU'"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**OpenDOAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>opendoar_id</th>\n",
       "      <th>institution</th>\n",
       "      <th>org_name</th>\n",
       "      <th>org_other_names</th>\n",
       "      <th>org_country</th>\n",
       "      <th>org_3</th>\n",
       "      <th>org_noprofit</th>\n",
       "      <th>org_url</th>\n",
       "      <th>org_ids</th>\n",
       "      <th>org_date1</th>\n",
       "      <th>org_date2</th>\n",
       "      <th>org_contact</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>101</td>\n",
       "      <td>[university of utrecht, [universiteit utrecht]...</td>\n",
       "      <td>university of utrecht</td>\n",
       "      <td>[universiteit utrecht]</td>\n",
       "      <td>NLD</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>https://www.uu.nl</td>\n",
       "      <td>[https://ror.org/04pp8hn57]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>115</td>\n",
       "      <td>[indian institute of management kozhikode, [ii...</td>\n",
       "      <td>indian institute of management kozhikode</td>\n",
       "      <td>[iimk]</td>\n",
       "      <td>IND</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>http://www.iimk.ac.in/</td>\n",
       "      <td>[https://ror.org/03m1xdc36]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>41</td>\n",
       "      <td>[california institute of technology, [caltech]...</td>\n",
       "      <td>california institute of technology</td>\n",
       "      <td>[caltech]</td>\n",
       "      <td>USA</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>http://www.caltech.edu/</td>\n",
       "      <td>[https://ror.org/05dxps055]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>119</td>\n",
       "      <td>[dublin city university, [dcu], ie, [], , http...</td>\n",
       "      <td>dublin city university</td>\n",
       "      <td>[dcu]</td>\n",
       "      <td>IRL</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>http://www.dcu.ie/</td>\n",
       "      <td>[https://ror.org/04a1a1e81]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>129</td>\n",
       "      <td>[istituto nazionale di geofisica e vulcanologi...</td>\n",
       "      <td>istituto nazionale di geofisica e vulcanologia</td>\n",
       "      <td>[ingv]</td>\n",
       "      <td>ITA</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>http://www.ingv.it</td>\n",
       "      <td>[https://ror.org/00qps9a02]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "   opendoar_id                                        institution  \\\n",
       "0          101  [university of utrecht, [universiteit utrecht]...   \n",
       "1          115  [indian institute of management kozhikode, [ii...   \n",
       "2           41  [california institute of technology, [caltech]...   \n",
       "3          119  [dublin city university, [dcu], ie, [], , http...   \n",
       "4          129  [istituto nazionale di geofisica e vulcanologi...   \n",
       "\n",
       "                                         org_name         org_other_names  \\\n",
       "0                           university of utrecht  [universiteit utrecht]   \n",
       "1        indian institute of management kozhikode                  [iimk]   \n",
       "2              california institute of technology               [caltech]   \n",
       "3                          dublin city university                   [dcu]   \n",
       "4  istituto nazionale di geofisica e vulcanologia                  [ingv]   \n",
       "\n",
       "  org_country org_3 org_noprofit                  org_url  \\\n",
       "0         NLD    []                     https://www.uu.nl   \n",
       "1         IND    []                http://www.iimk.ac.in/   \n",
       "2         USA    []               http://www.caltech.edu/   \n",
       "3         IRL    []                    http://www.dcu.ie/   \n",
       "4         ITA    []                    http://www.ingv.it   \n",
       "\n",
       "                       org_ids org_date1 org_date2 org_contact  \n",
       "0  [https://ror.org/04pp8hn57]                              []  \n",
       "1  [https://ror.org/03m1xdc36]                              []  \n",
       "2  [https://ror.org/05dxps055]                              []  \n",
       "3  [https://ror.org/04a1a1e81]                              []  \n",
       "4  [https://ror.org/00qps9a02]                              []  "
      ]
     },
     "execution_count": 25,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "opendoar_institutions = opendoar_df.explode('institution')[['opendoar_id', 'institution']]\n",
    "opendoar_institutions = opendoar_institutions[~opendoar_institutions.institution.isna()].reset_index(drop=True)\n",
    "opendoar_institutions = opendoar_institutions.join(pd.DataFrame(opendoar_institutions.institution.to_list(), columns=['org_name', 'org_other_names', \n",
    "                                                                                              'org_country', 'org_3', 'org_noprofit', \n",
    "                                                                                              'org_url', 'org_ids', 'org_date1', \n",
    "                                                                                              'org_date2', 'org_contact']))\n",
    "opendoar_institutions['org_country'] = opendoar_institutions.org_country.map(str.upper, na_action='ignore')\n",
    "opendoar_institutions['org_country'] = opendoar_institutions.org_country.map(countrycode_iso2_to_countrycode_iso3, na_action='ignore')\n",
    "opendoar_institutions.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {},
   "outputs": [],
   "source": [
    "opendoar_institutions['org_continent'] = opendoar_institutions.org_country.map(countrycode_to_continent)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([nan, 'UMI'], dtype=object)"
      ]
     },
     "execution_count": 27,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "opendoar_institutions[opendoar_institutions.org_continent.isna()].org_country.unique()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>opendoar_id</th>\n",
       "      <th>institution</th>\n",
       "      <th>org_name</th>\n",
       "      <th>org_other_names</th>\n",
       "      <th>org_country</th>\n",
       "      <th>org_3</th>\n",
       "      <th>org_noprofit</th>\n",
       "      <th>org_url</th>\n",
       "      <th>org_ids</th>\n",
       "      <th>org_date1</th>\n",
       "      <th>org_date2</th>\n",
       "      <th>org_contact</th>\n",
       "      <th>org_continent</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>4349</th>\n",
       "      <td>5379</td>\n",
       "      <td>[kettering university, [], um, [], , https://w...</td>\n",
       "      <td>kettering university</td>\n",
       "      <td>[]</td>\n",
       "      <td>UMI</td>\n",
       "      <td>[]</td>\n",
       "      <td></td>\n",
       "      <td>https://www.kettering.edu</td>\n",
       "      <td>[https://ror.org/03rcspa57]</td>\n",
       "      <td></td>\n",
       "      <td></td>\n",
       "      <td>[]</td>\n",
       "      <td>NA</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "      opendoar_id                                        institution  \\\n",
       "4349         5379  [kettering university, [], um, [], , https://w...   \n",
       "\n",
       "                  org_name org_other_names org_country org_3 org_noprofit  \\\n",
       "4349  kettering university              []         UMI    []                \n",
       "\n",
       "                        org_url                      org_ids org_date1  \\\n",
       "4349  https://www.kettering.edu  [https://ror.org/03rcspa57]             \n",
       "\n",
       "     org_date2 org_contact org_continent  \n",
       "4349                    []            NA  "
      ]
     },
     "execution_count": 28,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "opendoar_institutions.loc[opendoar_institutions.org_country == 'UMI', 'org_continent'] = 'NA'\n",
    "opendoar_institutions[opendoar_institutions.org_country == 'UMI']"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**ROAR**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {},
   "outputs": [],
   "source": [
    "roar_df['location_country'] = roar_df.location_country.map(str.upper, na_action='ignore')\n",
    "roar_df['location_country'] = roar_df.location_country.map(countrycode_iso2_to_countrycode_iso3)\n",
    "roar_df['continent'] = roar_df.location_country.map(countrycode_to_continent)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**FAIRsharing**"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [],
   "source": [
    "fairsharing_df['subjects'] = fairsharing_df.subjects.str.split(pat=',')\n",
    "fairsharing_df['countries'] = fairsharing_df.countries.str.split(pat=',')\n",
    "\n",
    "fairsharing_countries = fairsharing_df.explode('countries')\n",
    "fairsharing_countries['countrycode'] = fairsharing_countries.countries.map(country_to_countrycode)\n",
    "fairsharing_countries['continent'] = fairsharing_countries.countrycode.map(countrycode_to_continent)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['European Union', 'Republic of Ireland', 'Worldwide', nan],\n",
       "      dtype=object)"
      ]
     },
     "execution_count": 31,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fairsharing_countries[fairsharing_countries.countrycode.isna()].countries.unique()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array(['European Union', 'Republic of Ireland', 'Worldwide', 'Antarctica',\n",
       "       nan], dtype=object)"
      ]
     },
     "execution_count": 32,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fairsharing_countries[fairsharing_countries.continent.isna()].countries.unique()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Fix manually some rows"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {},
   "outputs": [],
   "source": [
    "fairsharing_countries.loc[fairsharing_countries.countries == 'Republic of Ireland', ['countries', 'countrycode', 'continent']] = ['Ireland', 'IE', 'EU']\n",
    "fairsharing_countries.loc[fairsharing_countries.countries == 'European Union', ['countrycode', 'continent']] = ['EU', 'EU']"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Make Antactica disappear (only one repo)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>full_name</th>\n",
       "      <th>short_name</th>\n",
       "      <th>fs_url</th>\n",
       "      <th>url</th>\n",
       "      <th>countries</th>\n",
       "      <th>subjects</th>\n",
       "      <th>countrycode</th>\n",
       "      <th>continent</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>915</th>\n",
       "      <td>Antabif IPT - AntOBIS IPT - GBIF Belgium</td>\n",
       "      <td>Antabif IPT - AntOBIS IPT - GBIF Belgium</td>\n",
       "      <td>https://fairsharing.org/10.25504/FAIRsharing.e...</td>\n",
       "      <td>http://ipt.biodiversity.aq/</td>\n",
       "      <td>Antarctica</td>\n",
       "      <td>[Biodiversity, Life Science]</td>\n",
       "      <td>AQ</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                    full_name  \\\n",
       "915  Antabif IPT - AntOBIS IPT - GBIF Belgium   \n",
       "\n",
       "                                   short_name  \\\n",
       "915  Antabif IPT - AntOBIS IPT - GBIF Belgium   \n",
       "\n",
       "                                                fs_url  \\\n",
       "915  https://fairsharing.org/10.25504/FAIRsharing.e...   \n",
       "\n",
       "                             url   countries                      subjects  \\\n",
       "915  http://ipt.biodiversity.aq/  Antarctica  [Biodiversity, Life Science]   \n",
       "\n",
       "    countrycode continent  \n",
       "915          AQ       NaN  "
      ]
     },
     "execution_count": 34,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "fairsharing_countries.loc[fairsharing_countries.countries == 'Antarctica', ['countrycode', 'continent']] = ['AQ', np.nan]\n",
    "fairsharing_countries[fairsharing_countries.countrycode == 'AQ']"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Country coverage"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
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       "                            \n",
       "var gd = document.getElementById('3e2361db-b571-4e06-aad9-b7257a0b43f2');\n",
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       "        if (!display || display === 'none') {{\n",
       "            console.log([gd, 'removed!']);\n",
       "            Plotly.purge(gd);\n",
       "            observer.disconnect();\n",
       "        }}\n",
       "}});\n",
       "\n",
       "// Listen for the removal of the full notebook cells\n",
       "var notebookContainer = gd.closest('#notebook-container');\n",
       "if (notebookContainer) {{\n",
       "    x.observe(notebookContainer, {childList: true});\n",
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       "\n",
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       "var outputEl = gd.closest('.output');\n",
       "if (outputEl) {{\n",
       "    x.observe(outputEl, {childList: true});\n",
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      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "data1 = re3data_institutions.groupby('org_country')[['re3data_id']].count().sort_values('re3data_id', ascending=False)\n",
    "data2 = opendoar_institutions.groupby('org_country')[['opendoar_id']].count().sort_values('opendoar_id', ascending=False)\n",
    "data3 = roar_df.groupby('location_country')[['eprintid']].count().sort_values('eprintid', ascending=False)\n",
    "data4 = fairsharing_countries.groupby('countrycode')[['url']].count().sort_values('url', ascending=False)\n",
    "\n",
    "plot = [\n",
    "    go.Bar(\n",
    "        x=data1.index,\n",
    "        y=data1['re3data_id'],\n",
    "        name='re3data'\n",
    "    ),\n",
    "    go.Bar(\n",
    "        x=data2.index,\n",
    "        y=data2['opendoar_id'],\n",
    "        name='openDOAR',\n",
    "        visible = 'legendonly'\n",
    "    ),\n",
    "    go.Bar(\n",
    "        x=data3.index,\n",
    "        y=data3['eprintid'],\n",
    "        name='ROAR',\n",
    "        visible = 'legendonly'\n",
    "    ),\n",
    "    go.Bar(\n",
    "        x=data4.index,\n",
    "        y=data4['url'],\n",
    "        name='FAIRsharing',\n",
    "        visible = 'legendonly'\n",
    "    )\n",
    "]\n",
    "\n",
    "layout = go.Layout(\n",
    "    title='Country coverage',\n",
    "    xaxis=dict(tickangle=45, tickfont=dict(size=12))\n",
    ")\n",
    "\n",
    "go.Figure(plot, layout).show()"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Continental coverage"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {},
   "outputs": [
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     },
     "metadata": {},
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   ],
   "source": [
    "data1 = re3data_institutions.groupby('org_continent')[['re3data_id']].count()\n",
    "data2 = opendoar_institutions.groupby('org_continent')[['opendoar_id']].count()\n",
    "data3 = roar_df.groupby('continent')[['eprintid']].count()\n",
    "data4 = fairsharing_countries.groupby('continent')[['url']].count()\n",
    "\n",
    "plot = [\n",
    "    go.Scatterpolar(\n",
    "        r=data1.re3data_id,\n",
    "        theta=data1.index,\n",
    "        fill='toself',\n",
    "        name='re3data'),\n",
    "    go.Scatterpolar(\n",
    "        r=data2.opendoar_id,\n",
    "        theta=data2.index,\n",
    "        fill='toself',\n",
    "        name='OpenDOAR'),\n",
    "    go.Scatterpolar(\n",
    "        r=data3.eprintid,\n",
    "        theta=data3.index,\n",
    "        fill='toself',\n",
    "        name='ROAR'),\n",
    "    go.Scatterpolar(\n",
    "        r=data4.url,\n",
    "        theta=data4.index,\n",
    "        fill='toself',\n",
    "        name='FAIRsharing')\n",
    "]\n",
    "\n",
    "layout = go.Layout(polar=dict(\n",
    "    radialaxis=dict(\n",
    "      visible=True\n",
    "    ),\n",
    "  )\n",
    ")\n",
    "\n",
    "go.Figure(plot, layout).show()"
   ]
  },
  {
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