forked from D-Net/dnet-hadoop
195 lines
7.3 KiB
XML
195 lines
7.3 KiB
XML
<workflow-app name="blacklist_relations" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>postgresURL</name>
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<description>the url of the postgress server to query</description>
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</property>
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<property>
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<name>postgresUser</name>
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<description>the username to access the postgres db</description>
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</property>
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<property>
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<name>postgresPassword</name>
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<description>the postgres password</description>
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</property>
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<property>
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<name>sourcePath</name>
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<description>the source path</description>
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</property>
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<property>
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<name>outputPath</name>
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<description>the graph output path</description>
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</property>
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</parameters>
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<start to="reset_outputpath"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="reset_outputpath">
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<fs>
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<delete path="${outputPath}"/>
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<mkdir path="${outputPath}"/>
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</fs>
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<ok to="copy_entities"/>
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<error to="Kill"/>
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</action>
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<fork name="copy_entities">
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<path start="copy_publication"/>
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<path start="copy_dataset"/>
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<path start="copy_orp"/>
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<path start="copy_software"/>
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<path start="copy_datasource"/>
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<path start="copy_project"/>
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<path start="copy_organization"/>
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</fork>
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<action name="copy_publication">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/publication</arg>
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<arg>${nameNode}/${outputPath}/publication</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_dataset">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/dataset</arg>
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<arg>${nameNode}/${outputPath}/dataset</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_orp">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/otherresearchproduct</arg>
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<arg>${nameNode}/${outputPath}/otherresearchproduct</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_software">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/software</arg>
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<arg>${nameNode}/${outputPath}/software</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_organization">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/organization</arg>
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<arg>${nameNode}/${outputPath}/organization</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_project">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/project</arg>
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<arg>${nameNode}/${outputPath}/project</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<action name="copy_datasource">
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<distcp xmlns="uri:oozie:distcp-action:0.2">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<arg>${nameNode}/${sourcePath}/datasource</arg>
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<arg>${nameNode}/${outputPath}/datasource</arg>
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</distcp>
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<ok to="wait"/>
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<error to="Kill"/>
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</action>
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<join name="wait" to="read_blacklist"/>
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<action name="read_blacklist">
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<java>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<main-class>eu.dnetlib.dhp.blacklist.ReadBlacklistFromDB</main-class>
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<arg>--hdfsPath</arg><arg>${workingDir}/blacklist</arg>
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<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
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<arg>--postgresUrl</arg><arg>${postgresURL}</arg>
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<arg>--postgresUser</arg><arg>${postgresUser}</arg>
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<arg>--postgresPassword</arg><arg>${postgresPassword}</arg>
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</java>
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<ok to="prepare_merged_relation"/>
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<error to="Kill"/>
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</action>
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<action name="prepare_merged_relation">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>PrepareMergedRelation</name>
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<class>eu.dnetlib.dhp.blacklist.PrepareMergedRelationJob</class>
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<jar>dhp-blacklist-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/relation</arg>
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<arg>--outputPath</arg><arg>${workingDir}/mergesRelation</arg>
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<arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
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</spark>
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<ok to="apply_blacklist"/>
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<error to="Kill"/>
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</action>
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<action name="apply_blacklist">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>ApplyBlacklist</name>
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<class>eu.dnetlib.dhp.blacklist.SparkRemoveBlacklistedRelationJob</class>
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<jar>dhp-blacklist-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-cores=${sparkExecutorCores}
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--executor-memory=${sparkExecutorMemory}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePath</arg><arg>${sourcePath}/relation</arg>
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<arg>--outputPath</arg><arg>${outputPath}/relation</arg>
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<arg>--hdfsPath</arg><arg>${workingDir}/blacklist</arg>
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<arg>--mergesPath</arg><arg>${workingDir}/mergesRelation</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app> |