dnet-hadoop/dhp-workflows/dhp-dedup-openaire/src/main/resources/eu/dnetlib/dhp/oa/dedup/consistency/oozie_app/workflow.xml

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XML

<workflow-app name="Update Graph" xmlns="uri:oozie:workflow:0.5">
<parameters>
<property>
<name>graphBasePath</name>
<description>the raw graph base path</description>
</property>
<property>
<name>workingPath</name>
<description>path of the working directory</description>
</property>
<property>
<name>dedupGraphPath</name>
<description>path of the dedup graph</description>
</property>
<property>
<name>sparkDriverMemory</name>
<description>memory for driver process</description>
</property>
<property>
<name>sparkExecutorMemory</name>
<description>memory for individual executor</description>
</property>
<property>
<name>sparkExecutorCores</name>
<description>number of cores used by single executor</description>
</property>
<property>
<name>oozieActionShareLibForSpark2</name>
<description>oozie action sharelib for spark 2.*</description>
</property>
<property>
<name>spark2ExtraListeners</name>
<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
<description>spark 2.* extra listeners classname</description>
</property>
<property>
<name>spark2SqlQueryExecutionListeners</name>
<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
<description>spark 2.* sql query execution listeners classname</description>
</property>
<property>
<name>spark2YarnHistoryServerAddress</name>
<description>spark 2.* yarn history server address</description>
</property>
<property>
<name>spark2EventLogDir</name>
<description>spark 2.* event log dir location</description>
</property>
</parameters>
<global>
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<configuration>
<property>
<name>mapreduce.job.queuename</name>
<value>${queueName}</value>
</property>
<property>
<name>oozie.launcher.mapred.job.queue.name</name>
<value>${oozieLauncherQueueName}</value>
</property>
<property>
<name>oozie.action.sharelib.for.spark</name>
<value>${oozieActionShareLibForSpark2}</value>
</property>
</configuration>
</global>
<start to="PropagateRelation"/>
<kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
</kill>
<action name="PropagateRelation">
<spark xmlns="uri:oozie:spark-action:0.2">
<master>yarn</master>
<mode>cluster</mode>
<name>Update Relations</name>
<class>eu.dnetlib.dhp.oa.dedup.SparkPropagateRelation</class>
<jar>dhp-dedup-openaire-${projectVersion}.jar</jar>
<spark-opts>
--executor-memory=${sparkExecutorMemory}
--executor-cores=${sparkExecutorCores}
--driver-memory=${sparkDriverMemory}
--conf spark.extraListeners=${spark2ExtraListeners}
--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
--conf spark.sql.shuffle.partitions=7680
</spark-opts>
<arg>--i</arg><arg>${graphBasePath}</arg>
<arg>--o</arg><arg>${dedupGraphPath}</arg>
<arg>--w</arg><arg>${workingPath}</arg>
</spark>
<ok to="fork_copy_entities"/>
<error to="Kill"/>
</action>
<fork name="fork_copy_entities">
<path start="copy_datasource"/>
<path start="copy_project"/>
<path start="copy_organization"/>
<path start="copy_publication"/>
<path start="copy_dataset"/>
<path start="copy_software"/>
<path start="copy_otherresearchproduct"/>
</fork>
<action name="copy_datasource">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/datasource"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/datasource</arg>
<arg>${dedupGraphPath}/datasource</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_project">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/project"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/project</arg>
<arg>${dedupGraphPath}/project</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_organization">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/organization"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/organization</arg>
<arg>${dedupGraphPath}/organization</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_publication">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/publication"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/publication</arg>
<arg>${dedupGraphPath}/publication</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_dataset">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/dataset"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/dataset</arg>
<arg>${dedupGraphPath}/dataset</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_software">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/software"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/software</arg>
<arg>${dedupGraphPath}/software</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<action name="copy_otherresearchproduct">
<distcp xmlns="uri:oozie:distcp-action:0.2">
<prepare>
<delete path="${dedupGraphPath}/otherresearchproduct"/>
</prepare>
<arg>-pb</arg>
<arg>${graphBasePath}/otherresearchproduct</arg>
<arg>${dedupGraphPath}/otherresearchproduct</arg>
</distcp>
<ok to="wait_copy"/>
<error to="Kill"/>
</action>
<join name="wait_copy" to="End"/>
<end name="End"/>
</workflow-app>