package eu.dnetlib.dhp.transformation; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.io.IOException; import java.util.Map; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoder; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.apache.spark.util.LongAccumulator; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.data.mdstore.manager.common.model.MDStoreVersion; import eu.dnetlib.dhp.aggregation.common.AggregationCounter; import eu.dnetlib.dhp.aggregation.common.AggregationUtility; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.model.mdstore.MetadataRecord; import eu.dnetlib.dhp.utils.ISLookupClientFactory; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; public class TransformSparkJobNode { private static final Logger log = LoggerFactory.getLogger(TransformSparkJobNode.class); public static void main(String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( TransformSparkJobNode.class .getResourceAsStream( "/eu/dnetlib/dhp/transformation/transformation_input_parameters.json"))); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String mdstoreInputVersion = parser.get("mdstoreInputVersion"); final String mdstoreOutputVersion = parser.get("mdstoreOutputVersion"); // TODO this variable will be used after implementing Messaging with DNet Aggregator final ObjectMapper jsonMapper = new ObjectMapper(); final MDStoreVersion nativeMdStoreVersion = jsonMapper.readValue(mdstoreInputVersion, MDStoreVersion.class); final MDStoreVersion cleanedMdStoreVersion = jsonMapper.readValue(mdstoreOutputVersion, MDStoreVersion.class); final String isLookupUrl = parser.get("isLookupUrl"); log.info(String.format("isLookupUrl: %s", isLookupUrl)); final ISLookUpService isLookupService = ISLookupClientFactory.getLookUpService(isLookupUrl); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> transformRecords( parser.getObjectMap(), isLookupService, spark, nativeMdStoreVersion.getHdfsPath(), cleanedMdStoreVersion.getHdfsPath())); } public static void transformRecords(final Map args, final ISLookUpService isLookUpService, final SparkSession spark, final String inputPath, final String outputPath) throws DnetTransformationException, IOException { final LongAccumulator totalItems = spark.sparkContext().longAccumulator("TotalItems"); final LongAccumulator errorItems = spark.sparkContext().longAccumulator("errorItems"); final LongAccumulator transformedItems = spark.sparkContext().longAccumulator("transformedItems"); final AggregationCounter ct = new AggregationCounter(totalItems, errorItems, transformedItems); final Encoder encoder = Encoders.bean(MetadataRecord.class); final Dataset mdstoreInput = spark.read().format("parquet").load(inputPath).as(encoder); final MapFunction XSLTTransformationFunction = TransformationFactory .getTransformationPlugin(args, ct, isLookUpService); mdstoreInput.map(XSLTTransformationFunction, encoder).write().save(outputPath + "/store"); log.info("Transformed item " + ct.getProcessedItems().count()); log.info("Total item " + ct.getTotalItems().count()); log.info("Transformation Error item " + ct.getErrorItems().count()); AggregationUtility.writeTotalSizeOnHDFS(spark, ct.getProcessedItems().count(), outputPath + "/size"); } }