package eu.dnetlib.dhp.broker.oa; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SparkSession; import org.apache.spark.util.LongAccumulator; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import eu.dnetlib.broker.objects.OaBrokerMainEntity; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.broker.oa.util.ClusterUtils; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct; import eu.dnetlib.dhp.schema.oaf.Publication; import eu.dnetlib.dhp.schema.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Software; public class PrepareSimpleEntititiesJob { private static final Logger log = LoggerFactory.getLogger(PrepareSimpleEntititiesJob.class); public static void main(final String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( PrepareSimpleEntititiesJob.class .getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json"))); parser.parseArgument(args); final Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String graphPath = parser.get("graphPath"); log.info("graphPath: {}", graphPath); final String workingDir = parser.get("workingDir"); log.info("workingDir: {}", workingDir); final String simpleEntitiesPath = workingDir + "/simpleEntities"; log.info("simpleEntitiesPath: {}", simpleEntitiesPath); final SparkConf conf = new SparkConf(); runWithSparkSession(conf, isSparkSessionManaged, spark -> { ClusterUtils.removeDir(spark, simpleEntitiesPath); final LongAccumulator total = spark.sparkContext().longAccumulator("total_entities"); final Dataset dataset = prepareSimpleEntities(spark, graphPath, Publication.class) .union(prepareSimpleEntities(spark, graphPath, eu.dnetlib.dhp.schema.oaf.Dataset.class)) .union(prepareSimpleEntities(spark, graphPath, Software.class)) .union(prepareSimpleEntities(spark, graphPath, OtherResearchProduct.class)); ClusterUtils.save(dataset, simpleEntitiesPath, OaBrokerMainEntity.class, total); }); } private static Dataset prepareSimpleEntities( final SparkSession spark, final String graphPath, final Class sourceClass) { return ClusterUtils .readPath(spark, graphPath + "/" + sourceClass.getSimpleName().toLowerCase(), sourceClass) .filter(r -> !ClusterUtils.isDedupRoot(r.getId())) .filter(r -> r.getDataInfo().getDeletedbyinference()) .map(ConversionUtils::oafResultToBrokerResult, Encoders.bean(OaBrokerMainEntity.class)); } }