package eu.dnetlib.dhp.oa.dedup; import com.google.common.hash.HashFunction; import com.google.common.hash.Hashing; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException; import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; import org.apache.commons.io.FileUtils; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.SparkSession; import org.junit.jupiter.api.*; import org.junit.jupiter.api.extension.ExtendWith; import org.mockito.Mock; import org.mockito.Mockito; import org.mockito.junit.jupiter.MockitoExtension; import java.io.File; import java.io.IOException; import java.net.URISyntaxException; import java.nio.file.Paths; import static org.mockito.Mockito.when; import static org.junit.jupiter.api.Assertions.assertEquals; @ExtendWith(MockitoExtension.class) @TestMethodOrder(MethodOrderer.OrderAnnotation.class) public class SparkDedupTest { @Mock ISLookUpService isLookUpService; private SparkSession spark; private static String testGraphBasePath; private final static String testOutputBasePath = "/tmp/test_dedup_workflow"; private final static String testActionSetId = "test-orchestrator"; private final static String testDedupGraphBasePath = "/tmp/test_dedup_workflow/dedup_graph"; @BeforeAll private static void cleanUp() throws IOException, URISyntaxException { testGraphBasePath = Paths.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/entities").toURI()).toFile().getAbsolutePath(); FileUtils.deleteDirectory(new File(testOutputBasePath)); } @BeforeEach private void setUp() throws IOException, ISLookUpException { spark = SparkSession .builder() .appName(SparkCreateSimRels.class.getSimpleName()) .master("local[*]") .config(new SparkConf()) .getOrCreate(); when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId))) .thenReturn(IOUtils.toString(SparkDedupTest.class.getResourceAsStream("/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator.xml"))); when(isLookUpService.getResourceProfileByQuery(Mockito.contains("organization"))) .thenReturn(IOUtils.toString(SparkDedupTest.class.getResourceAsStream("/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json"))); when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication"))) .thenReturn(IOUtils.toString(SparkDedupTest.class.getResourceAsStream("/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json"))); } @Test @Order(1) public void createSimRelsTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils.toString( SparkCreateSimRels.class.getResourceAsStream("/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json"))); parser.parseArgument(new String[]{ "-mt", "local[*]", "-i", testGraphBasePath, "-asi", testActionSetId, "-la", "lookupurl", "-w", testOutputBasePath}); new SparkCreateSimRels(parser, spark).run(isLookUpService); long orgs_simrel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/organization_simrel").count(); long pubs_simrel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/publication_simrel").count(); System.out.println("pubs_simrel = " + pubs_simrel); System.out.println("orgs_simrel = " + orgs_simrel); // assertEquals(918, orgs_simrel); // assertEquals(0, pubs_simrel); } @Test @Order(2) public void createCCTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils.toString( SparkCreateConnectedComponent.class.getResourceAsStream("/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json"))); parser.parseArgument(new String[]{ "-mt", "local[*]", "-i", testGraphBasePath, "-asi", testActionSetId, "-la", "lookupurl", "-w", testOutputBasePath}); new SparkCreateConnectedComponent(parser, spark).run(isLookUpService); long orgs_mergerel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel").count(); long pubs_mergerel = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel").count(); System.out.println("pubs_mergerel = " + pubs_mergerel); System.out.println("orgs_mergerel = " + orgs_mergerel); // assertEquals(458, orgs_mergerel); // assertEquals(0, pubs_mergerel); } @Test @Order(3) public void dedupRecordTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils.toString( SparkCreateDedupRecord.class.getResourceAsStream("/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json"))); parser.parseArgument(new String[]{ "-mt", "local[*]", "-i", testGraphBasePath, "-asi", testActionSetId, "-la", "lookupurl", "-w", testOutputBasePath}); new SparkCreateDedupRecord(parser, spark).run(isLookUpService); long orgs_deduprecord = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/organization_deduprecord").count(); long pubs_deduprecord = spark.read().load(testOutputBasePath + "/" + testActionSetId + "/publication_deduprecord").count(); System.out.println("pubs_deduprecord = " + pubs_deduprecord); System.out.println("pubs_deduprecord = " + orgs_deduprecord); // assertEquals(458, orgs_deduprecord); // assertEquals(0, pubs_deduprecord); } @Test @Order(4) public void updateEntityTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils.toString( SparkUpdateEntity.class.getResourceAsStream("/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json"))); parser.parseArgument(new String[]{ "-mt", "local[*]", "-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath }); new SparkUpdateEntity(parser, spark).run(isLookUpService); long organizations = spark.read().load(testDedupGraphBasePath + "/organization").count(); long publications = spark.read().load(testDedupGraphBasePath + "/publication").count(); System.out.println("publications = " + publications); System.out.println("organizations = " + organizations); } @Test @Order(5) public void propagateRelationTest() throws Exception { ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils.toString( SparkPropagateRelation.class.getResourceAsStream("/eu/dnetlib/dhp/oa/dedup/propagateRelation_parameters.json"))); parser.parseArgument(new String[]{ "-mt", "local[*]", "-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath }); new SparkPropagateRelation(parser, spark).run(isLookUpService); long relations = spark.read().load(testDedupGraphBasePath + "/relation").count(); System.out.println("relations = " + relations); } @Disabled("must be parametrized to run locally") public void testHashCode() { final String s1 = "20|grid________::6031f94bef015a37783268ec1e75f17f"; final String s2 = "20|nsf_________::b12be9edf414df8ee66b4c52a2d8da46"; final HashFunction hashFunction = Hashing.murmur3_128(); System.out.println(s1.hashCode()); System.out.println(hashFunction.hashString(s1).asLong()); System.out.println(s2.hashCode()); System.out.println(hashFunction.hashString(s2).asLong()); } }