package eu.dnetlib.dhp.oa.graph.dump; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.schema.dump.oaf.Projects; import eu.dnetlib.dhp.schema.dump.oaf.Result; import eu.dnetlib.dhp.schema.oaf.Project; import eu.dnetlib.dhp.schema.oaf.Relation; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.api.java.function.MapGroupsFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import scala.Tuple2; import java.io.Serializable; import java.util.Arrays; import java.util.List; import java.util.Optional; import java.util.stream.Collectors; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; public class SparkPrepareResultProject implements Serializable { private static final Logger log = LoggerFactory.getLogger(SparkPrepareResultProject.class); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( SparkPrepareResultProject.class .getResourceAsStream( "/eu/dnetlib/dhp/oa/graph/dump/project_prepare_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String inputPath = parser.get("sourcePath"); log.info("inputPath: {}", inputPath); final String outputPath = parser.get("outputPath"); log.info("outputPath: {}", outputPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { Utils.removeOutputDir(spark, outputPath); prepareResultProjectList(spark, inputPath, outputPath); }); } private static void prepareResultProjectList(SparkSession spark, String inputPath, String outputPath) { Dataset relation = Utils.readPath(spark, inputPath + "/relation" , Relation.class) .filter("dataInfo.deletedbyinference = false and relClass = 'produces'"); Dataset projects = Utils.readPath(spark, inputPath + "/project" , Project.class); projects.joinWith(relation, projects.col("id").equalTo(relation.col("source"))) .groupByKey((MapFunction,String>)value -> value._2().getTarget(), Encoders.STRING()) .mapGroups((MapGroupsFunction, ResultProject>) (s, it) -> { Tuple2 first = it.next(); ResultProject rp = new ResultProject(); rp.setResultId(first._2().getTarget()); Project p = first._1(); Projects ps = Projects.newInstance(p.getId(), p.getCode().getValue(), p.getAcronym().getValue(), p.getTitle().getValue(), p.getFundingtree() .stream() .map(ft -> ft.getValue()).collect(Collectors.toList())); List projList = Arrays.asList(ps); rp.setProjectsList(projList); it.forEachRemaining(c -> { Project op = c._1(); projList.add(Projects.newInstance(op.getId(), op.getCode().getValue(), op.getAcronym().getValue(), op.getTitle().getValue(), op.getFundingtree().stream().map(ft -> ft.getValue()).collect(Collectors.toList()))); }); return rp; } ,Encoders.bean(ResultProject.class)) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } }