package eu.dnetlib.dhp.actionmanager.project; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.*; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.api.java.function.FlatMapFunction; import org.apache.spark.api.java.function.MapFunction; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.apache.spark.sql.SparkSession; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.actionmanager.project.utils.CSVProject; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.common.HdfsSupport; import scala.Tuple2; /** * Selects only the relevant information collected with the projects: project grant agreement, project programme code and * project topic code for the projects that are also collected from OpenAIRE. */ public class PrepareProjects { private static final Logger log = LoggerFactory.getLogger(PrepareProgramme.class); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); public static void main(String[] args) throws Exception { String jsonConfiguration = IOUtils .toString( PrepareProjects.class .getResourceAsStream( "/eu/dnetlib/dhp/actionmanager/project/prepare_project_parameters.json")); final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration); parser.parseArgument(args); Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String projectPath = parser.get("projectPath"); log.info("projectPath {}: ", projectPath); final String outputPath = parser.get("outputPath"); log.info("outputPath {}: ", outputPath); final String dbProjectPath = parser.get("dbProjectPath"); log.info("dbProjectPath {}: ", dbProjectPath); SparkConf conf = new SparkConf(); runWithSparkSession( conf, isSparkSessionManaged, spark -> { removeOutputDir(spark, outputPath); exec(spark, projectPath, dbProjectPath, outputPath); }); } private static void removeOutputDir(SparkSession spark, String path) { HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration()); } private static void exec(SparkSession spark, String projectPath, String dbProjectPath, String outputPath) { Dataset project = readPath(spark, projectPath, CSVProject.class); Dataset dbProjects = readPath(spark, dbProjectPath, ProjectSubset.class); dbProjects .joinWith(project, dbProjects.col("code").equalTo(project.col("id")), "left") .flatMap(getTuple2CSVProjectFlatMapFunction(), Encoders.bean(CSVProject.class)) .filter(Objects::nonNull) .write() .mode(SaveMode.Overwrite) .option("compression", "gzip") .json(outputPath); } private static FlatMapFunction, CSVProject> getTuple2CSVProjectFlatMapFunction() { return (FlatMapFunction, CSVProject>) value -> { Optional csvProject = Optional.ofNullable(value._2()); List csvProjectList = new ArrayList<>(); if (csvProject.isPresent()) { String[] programme = csvProject.get().getProgramme().split(";"); String topic = csvProject.get().getTopics(); Arrays .stream(programme) .forEach(p -> { CSVProject proj = new CSVProject(); proj.setTopics(topic); proj.setProgramme(p); proj.setId(csvProject.get().getId()); csvProjectList.add(proj); }); } return csvProjectList.iterator(); }; } public static Dataset readPath( SparkSession spark, String inputPath, Class clazz) { return spark .read() .textFile(inputPath) .map((MapFunction) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz)); } }