package eu.dnetlib.doiboost.uw import eu.dnetlib.dhp.application.ArgumentApplicationParser import eu.dnetlib.dhp.schema.oaf.Publication import eu.dnetlib.doiboost.crossref.SparkMapDumpIntoOAF import org.apache.commons.io.IOUtils import org.apache.spark.SparkConf import org.apache.spark.rdd.RDD import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession} import org.slf4j.{Logger, LoggerFactory} object SparkMapUnpayWallToOAF { def main(args: Array[String]): Unit = { val logger: Logger = LoggerFactory.getLogger(SparkMapDumpIntoOAF.getClass) val conf: SparkConf = new SparkConf() val parser = new ArgumentApplicationParser(IOUtils.toString(SparkMapDumpIntoOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json"))) parser.parseArgument(args) val spark: SparkSession = SparkSession .builder() .config(conf) .appName(getClass.getSimpleName) .master(parser.get("master")).getOrCreate() implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication] val sourcePath = parser.get("sourcePath") val targetPath = parser.get("targetPath") val inputRDD:RDD[String] = spark.sparkContext.textFile(s"$sourcePath") logger.info("Converting UnpayWall to OAF") val d:Dataset[Publication] = spark.createDataset(inputRDD.map(UnpayWallToOAF.convertToOAF).filter(p=>p!=null)).as[Publication] d.write.mode(SaveMode.Overwrite).save(targetPath) } }