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1415 Commits

Author SHA1 Message Date
Sandro La Bruzzo 9d9e9edbd2 improved extractEntity Relation workflows using dataset 2020-08-06 10:28:24 +02:00
Miriam Baglioni adf0ca5aa7 test to send is from hdfs 2020-08-05 14:24:43 +02:00
Miriam Baglioni 14eda4f46e added method to try to put inputstream to zenodo 2020-08-05 14:18:25 +02:00
Miriam Baglioni e737a47270 added classes to try to send input stream to zenodo for the upload 2020-08-05 14:17:40 +02:00
Miriam Baglioni 873e9cd50c changed hadoop setting to connect to s3 2020-08-04 15:37:25 +02:00
Alessia Bardi a29565ff57 code formatting 2020-08-04 12:55:27 +02:00
Alessia Bardi 01db29e208 fixes redmine issue #5846: datacite and its different namespace declarations 2020-08-04 12:53:48 +02:00
Alessia Bardi b4e4e5f858 do not duplicate result PIDs 2020-08-04 12:52:14 +02:00
Alessia Bardi 09a323d18d testing a dataset from Nakala 2020-08-04 12:50:52 +02:00
Alessia Bardi c35bf486cc added handle among the possible PIDs 2020-08-04 12:50:12 +02:00
Miriam Baglioni 5b651abf82 merge branch with master 2020-08-04 10:14:07 +02:00
Miriam Baglioni 88e4c3b751 added default trust to context bulktagged 2020-08-04 10:13:25 +02:00
Miriam Baglioni f9342cb484 added constant 2020-08-03 18:32:35 +02:00
Miriam Baglioni 96c3c891f4 added trust 2020-08-03 18:32:17 +02:00
Miriam Baglioni 53656600ad changed XQuery to select only community and ri with status not hidden 2020-08-03 18:29:30 +02:00
Miriam Baglioni b34177d8ef merge upstream 2020-08-03 18:13:42 +02:00
Miriam Baglioni 901ae37f7b added step to workflow 2020-08-03 18:12:54 +02:00
Miriam Baglioni fa38cdb10b added resource 2020-08-03 18:11:12 +02:00
Miriam Baglioni e9fcc0b2f1 commented test unit - to decide change for mirroring the changed logics 2020-08-03 18:10:53 +02:00
Miriam Baglioni e43aeb139a added new property file and changed some parameter to old files 2020-08-03 18:07:28 +02:00
Miriam Baglioni aa9f3d9698 changed logic for save in s3 directly 2020-08-03 18:06:18 +02:00
Miriam Baglioni d465f0eec9 added fulltext to result 2020-08-03 18:03:27 +02:00
Miriam Baglioni ec4b392d12 added new dependencies for writing on s3 2020-08-03 17:57:04 +02:00
Miriam Baglioni c892c7dfa7 changed to query for community map just once and save the result for remaining executions 2020-08-03 17:56:31 +02:00
Claudio Atzori 3a11a387a9 data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed 2020-08-03 14:28:08 +02:00
Alessia Bardi 8cc067fe76 specific test for claims 2020-08-03 11:17:50 +02:00
Claudio Atzori a89b6cc3ba Merge pull request 'nsprefix_blacklist' (#34) from nsprefix_blacklist into master 2020-07-31 11:52:23 +02:00
Sandro La Bruzzo 0c3bc9ea4b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-31 09:07:18 +02:00
Sandro La Bruzzo 168bfb496a adopted dedup to the new schema 2020-07-31 09:06:57 +02:00
Michele Artini 652b13abb6 Merge branch 'master' into nsprefix_blacklist 2020-07-31 07:58:37 +02:00
Claudio Atzori cd631bb5bc defaults fixed in the cleaning workflow forces result.publisher to NULL when result.publisher.value in empty 2020-07-30 17:03:53 +02:00
Miriam Baglioni 872d7783fc - 2020-07-30 16:50:36 +02:00
Miriam Baglioni 57c87b7653 re-implemented to fix issue on not serializable Set<String> variable 2020-07-30 16:43:43 +02:00
Miriam Baglioni ef8e5957b5 added specific directory where to save results 2020-07-30 16:42:46 +02:00
Miriam Baglioni 75f3361c85 - 2020-07-30 16:41:31 +02:00
Miriam Baglioni 3f695b25fa refactoring 2020-07-30 16:40:15 +02:00
Miriam Baglioni e623f12bef refactoring 2020-07-30 16:32:59 +02:00
Miriam Baglioni ff7d05abb4 added support class to store the couple organizationId representativeId gaot from sql query on hive 2020-07-30 16:32:04 +02:00
Miriam Baglioni cf6d80b2ab added command to close the writer 2020-07-30 16:31:22 +02:00
Miriam Baglioni f985bca37b added USER_CLAIM constant value 2020-07-30 16:25:26 +02:00
Claudio Atzori 4bbfcf1ac6 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-30 16:25:06 +02:00
Claudio Atzori 4ff8007518 added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step 2020-07-30 16:24:39 +02:00
Miriam Baglioni 6f1c40a933 - 2020-07-30 16:24:28 +02:00
Miriam Baglioni 2b66a93f9e added property file that was missing 2020-07-30 16:24:17 +02:00
Michele Artini bdece15ca0 blacklist of nsprefix 2020-07-30 16:13:38 +02:00
Sandro La Bruzzo c97c8f0c44 implemented new oozie job to extract entities in a separate dataset 2020-07-30 12:13:58 +02:00
Sandro La Bruzzo 3010a362bc updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:56 +02:00
Sandro La Bruzzo 487226f669 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-30 09:25:39 +02:00
Sandro La Bruzzo 16ae3c9ccf updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:32 +02:00
Miriam Baglioni ee8420c6b3 added resource for datasource test 2020-07-29 18:28:43 +02:00
Miriam Baglioni 76bcab98ce added code to filter out null originalId from the dump 2020-07-29 18:28:21 +02:00
Miriam Baglioni ef1d8aef17 added one test to verify the dump for the datasources 2020-07-29 18:27:46 +02:00
Miriam Baglioni 86bab79512 - 2020-07-29 18:20:22 +02:00
Miriam Baglioni 31791dcf3d fixed wrong property file path name 2020-07-29 18:20:08 +02:00
Miriam Baglioni 9e722aa1ef - 2020-07-29 18:00:08 +02:00
Miriam Baglioni d22f106f27 added constant to identify datasource associated to funders 2020-07-29 17:56:55 +02:00
Miriam Baglioni 40e194fe2f added check to not dump datasources related to funders 2020-07-29 17:56:18 +02:00
Miriam Baglioni b48934f6df changed the workflow name 2020-07-29 17:43:43 +02:00
Miriam Baglioni 1433db825d refactorign 2020-07-29 17:43:24 +02:00
Miriam Baglioni 074e9ab75e refactoring 2020-07-29 17:42:50 +02:00
Miriam Baglioni 8ad8dac7d4 merge branch with fork master 2020-07-29 17:38:28 +02:00
Miriam Baglioni 9e997e63a2 merge upstream 2020-07-29 17:38:14 +02:00
Miriam Baglioni 9fa82dc93b fixed issue 2020-07-29 17:36:16 +02:00
Miriam Baglioni 8907648d6a - 2020-07-29 17:35:47 +02:00
Miriam Baglioni 536e7f6352 added and changed resources for testing of the whole graph dump and of community related products dumps 2020-07-29 17:33:34 +02:00
Miriam Baglioni 4d7f590493 testings for the whole graph dump 2020-07-29 17:32:37 +02:00
Miriam Baglioni a2f73ec2c7 changed due to changes in the model 2020-07-29 17:32:02 +02:00
Miriam Baglioni 481585e9d3 - 2020-07-29 17:31:41 +02:00
Miriam Baglioni 40a8dafbdc - 2020-07-29 17:30:44 +02:00
Miriam Baglioni de2ebb467e changed due to changes in the model 2020-07-29 17:08:02 +02:00
Miriam Baglioni d0ff2a56fb - 2020-07-29 17:06:53 +02:00
Miriam Baglioni b96dedb56b changed due to changes in the model 2020-07-29 17:05:31 +02:00
Miriam Baglioni 6d0f08277b classes to implement the dump of the whole graph. 2020-07-29 17:03:19 +02:00
Miriam Baglioni 8d4327b292 input parameters and workflow definition for the dump of the whole graph 2020-07-29 17:00:34 +02:00
Miriam Baglioni b5f995ab12 refactoring 2020-07-29 16:59:48 +02:00
Miriam Baglioni f7a87cc447 added new constants value 2020-07-29 16:58:40 +02:00
Miriam Baglioni b71d12cf26 refactoring 2020-07-29 16:52:44 +02:00
Miriam Baglioni a8d65b68cb changed to delete the part to check if it was a test or a real execution 2020-07-29 16:47:57 +02:00
Miriam Baglioni 3ec2392904 Added new class to move the place the split is effectively run 2020-07-29 16:46:50 +02:00
Michele Artini 8ba94833bd added an es prop 2020-07-29 14:16:08 +02:00
Miriam Baglioni 178c2729a7 changed the path to reach the java class to be executed 2020-07-29 12:29:51 +02:00
Miriam Baglioni 437ac12139 removed unused parameter 2020-07-29 12:28:16 +02:00
Claudio Atzori 6f11c0496e fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 15:01:58 +02:00
Claudio Atzori f680eb3e12 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-28 14:10:56 +02:00
Claudio Atzori 985b360c31 fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 14:10:52 +02:00
Michele Artini 3acd632123 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-28 12:02:30 +02:00
Michele Artini 35e6e9c064 tests 2020-07-28 12:02:15 +02:00
Claudio Atzori ee832f358e Merge pull request 'stats_wf_extensions_and_corrections' (#28) from spyros/dnet-hadoop:stats_wf_extensions_and_corrections into master 
Thank you Guys! The update workflow will be made available to the beta & production orchestration systems under the HDFS path

```/lib/dnet/oa/graph/stats/oozie_app```
 2020-07-27 16:02:03 +02:00
Antonis Lempesis 4ac8ebe427 correctly calculating the project duration 2020-07-24 19:50:40 +03:00
Antonis Lempesis 18d9464b52 creating shadow db only if it not exists... 2020-07-24 19:50:40 +03:00
Antonis Lempesis e217d496ab added the dest db... 2020-07-24 19:50:40 +03:00
Antonis Lempesis b16bb68b9f added the target db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis 1ee7eeedf3 added the source db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis cecbbfa0fc added missing tables and views: contexts, creation_date, funder 2020-07-24 19:50:40 +03:00
Antonis Lempesis 25b7a615f5 moved datasource_sources table creating in the datasource section 2020-07-24 19:50:40 +03:00
Antonis Lempesis a8da4ab9c0 years in projects are now integers 2020-07-24 19:50:40 +03:00
Antonis Lempesis c9cfc165d9 not using impala since the resulting tables are not visible 2020-07-24 19:50:40 +03:00
Antonis Lempesis dd3d6a6e15 compute stats for the used and new impala tables 2020-07-24 19:50:40 +03:00
Antonis Lempesis e6f50de6ef Separated impala from hive steps 2020-07-24 19:50:40 +03:00
Antonis Lempesis de49173420 fixed a typo in queries 2020-07-24 19:50:40 +03:00