forked from D-Net/dnet-hadoop
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
This commit is contained in:
miconis
commit
e0d14fe4f8
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@ -62,10 +62,8 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser = new ArgumentApplicationParser(
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IOUtils
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.toString(
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MigrateDbEntitiesApplication.class
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.getResourceAsStream(
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"/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
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.toString(MigrateDbEntitiesApplication.class
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.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
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parser.parseArgument(args);
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@ -136,10 +134,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
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ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
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ds
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.setCollectedfrom(
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listKeyValues(
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createOpenaireId(10, rs.getString("collectedfromid"), true),
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rs.getString("collectedfromname")));
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.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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ds.setPid(new ArrayList<>());
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ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
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ds.setDateoftransformation(null); // Value not returned by the SQL query
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@ -180,8 +175,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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ds.setCertificates(field(rs.getString("certificates"), info));
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ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
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ds
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.setJournal(
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prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
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.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
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ds.setDataInfo(info);
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ds.setLastupdatetimestamp(lastUpdateTimestamp);
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@ -201,10 +195,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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p.setId(createOpenaireId(40, rs.getString("projectid"), true));
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p.setOriginalId(Arrays.asList(rs.getString("projectid")));
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p
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.setCollectedfrom(
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listKeyValues(
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createOpenaireId(10, rs.getString("collectedfromid"), true),
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rs.getString("collectedfromname")));
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.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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p.setPid(new ArrayList<>());
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p.setDateofcollection(asString(rs.getDate("dateofcollection")));
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p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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@ -221,8 +212,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
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p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
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p
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.setOamandatepublications(
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field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
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.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
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p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
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p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
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p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
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@ -259,10 +249,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
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o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
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o
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.setCollectedfrom(
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listKeyValues(
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createOpenaireId(10, rs.getString("collectedfromid"), true),
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rs.getString("collectedfromname")));
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.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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o.setPid(new ArrayList<>());
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o.setDateofcollection(asString(rs.getDate("dateofcollection")));
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o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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@ -277,15 +264,12 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
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o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
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o
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.setEcresearchorganization(
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field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
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.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
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o.setEchighereducation(field(Boolean.toString(rs.getBoolean("echighereducation")), info));
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o
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.setEcinternationalorganizationeurinterests(
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field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
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.setEcinternationalorganizationeurinterests(field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
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o
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.setEcinternationalorganization(
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field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
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.setEcinternationalorganization(field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
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o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
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o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
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o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
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@ -304,9 +288,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final DataInfo info = prepareDataInfo(rs);
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final String orgId = createOpenaireId(20, rs.getString("organization"), true);
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final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
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final List<KeyValue> collectedFrom = listKeyValues(
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createOpenaireId(10, rs.getString("collectedfromid"), true),
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rs.getString("collectedfromname"));
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final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
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final Relation r1 = new Relation();
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r1.setRelType("datasourceOrganization");
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@ -339,14 +321,12 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final DataInfo info = prepareDataInfo(rs);
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final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
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final String projectId = createOpenaireId(40, rs.getString("project"), true);
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final List<KeyValue> collectedFrom = listKeyValues(
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createOpenaireId(10, rs.getString("collectedfromid"), true),
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rs.getString("collectedfromname"));
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final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
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final Relation r1 = new Relation();
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r1.setRelType("projectOrganization");
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r1.setSubRelType("participation");
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r1.setRelClass("isParticipant");
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r1.setRelClass("hasParticipant");
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r1.setSource(projectId);
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r1.setTarget(orgId);
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r1.setCollectedfrom(collectedFrom);
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@ -356,7 +336,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final Relation r2 = new Relation();
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r2.setRelType("projectOrganization");
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r2.setSubRelType("participation");
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r2.setRelClass("hasParticipant");
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r2.setRelClass("isParticipant");
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r2.setSource(orgId);
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r2.setTarget(projectId);
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r2.setCollectedfrom(collectedFrom);
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@ -371,17 +351,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public List<Oaf> processClaims(final ResultSet rs) {
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final DataInfo info = dataInfo(
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false,
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null,
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false,
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false,
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qualifier(
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"user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"),
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"0.9");
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final DataInfo info =
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dataInfo(false, null, false, false, qualifier("user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"), "0.9");
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final List<KeyValue> collectedFrom = listKeyValues(
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createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
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final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
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try {
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@ -467,19 +440,11 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final String inferenceprovenance = rs.getString("inferenceprovenance");
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final Boolean inferred = rs.getBoolean("inferred");
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final String trust = rs.getString("trust");
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return dataInfo(
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deletedbyinference,
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inferenceprovenance,
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inferred,
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false,
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MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION,
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trust);
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return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION, trust);
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}
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private Qualifier prepareQualifierSplitting(final String s) {
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if (StringUtils.isBlank(s)) {
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return null;
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}
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if (StringUtils.isBlank(s)) { return null; }
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final String[] arr = s.split("@@@");
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return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
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}
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@ -493,22 +458,19 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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}
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private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
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if (StringUtils.isBlank(s)) {
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return null;
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}
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if (StringUtils.isBlank(s)) { return null; }
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final String[] parts = s.split("###");
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if (parts.length == 2) {
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final String value = parts[0];
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final String[] arr = parts[1].split("@@@");
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if (arr.length == 4) {
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return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo);
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}
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if (arr.length == 4) { return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo); }
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}
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return null;
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}
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private List<StructuredProperty> prepareListOfStructProps(
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final Array array, final DataInfo dataInfo) throws SQLException {
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final Array array,
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final DataInfo dataInfo) throws SQLException {
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final List<StructuredProperty> res = new ArrayList<>();
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if (array != null) {
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for (final String s : (String[]) array.getArray()) {
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@ -527,10 +489,8 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final String[] arr = sj.split("@@@");
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if (arr.length == 3) {
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final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0] : null;
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final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;
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;
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final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;
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;
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final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;;
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final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;;
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if (issn != null || eissn != null || lissn != null) {
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return journal(name, issn, eissn, eissn, null, null, null, null, null, null, null, info);
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}
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@ -3,10 +3,10 @@
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<parent>
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<artifactId>dhp-workflows</artifactId>
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<groupId>eu.dnetlib.dhp</groupId>
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<version>1.1.6-SNAPSHOT</version>
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<version>1.1.7-SNAPSHOT</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<artifactId>dhp-statistics-workflow</artifactId>
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<artifactId>dhp-stats-update</artifactId>
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<dependencies>
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<dependency>
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<groupId>org.apache.spark</groupId>
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