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dnet-hadoop
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fixed relType

This commit is contained in:
Michele Artini 2020-06-23 09:32:32 +02:00
parent af2f7705fc
commit c3286f4c37
8 changed files with 47 additions and 72 deletions
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15
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/PrepareRelatedDatasetsJob.java
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@ -15,9 +15,11 @@ import org.slf4j.LoggerFactory;
import eu.dnetlib.broker.objects.OaBrokerRelatedDataset;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedDataset;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class PrepareRelatedDatasetsJob {
@ -60,17 +62,18 @@ public class PrepareRelatedDatasetsJob {
final Dataset<Relation> rels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
.filter(r -> !ClusterUtils.isDedupRoot(r.getTarget()));
rels
.joinWith(datasets, datasets.col("openaireId").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedDataset(
t._1.getSource(),
t._1.getRelType(),
t._2),
Encoders.bean(RelatedDataset.class))
.map(t -> {
final RelatedDataset rel = new RelatedDataset(t._1.getSource(), t._2);
rel.getRelDataset().setRelType(t._1.getRelClass());
return rel;
}, Encoders.bean(RelatedDataset.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);

17
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/PrepareRelatedProjectsJob.java
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@ -15,7 +15,9 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.broker.objects.OaBrokerProject;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedProject;
@ -58,22 +60,21 @@ public class PrepareRelatedProjectsJob {
ClusterUtils.removeDir(spark, relsPath);
final Dataset<Project> projects = ClusterUtils.readPath(spark, graphPath + "/project", Project.class);
final Dataset<OaBrokerProject> projects = ClusterUtils
.readPath(spark, graphPath + "/project", Project.class)
.filter(p -> !ClusterUtils.isDedupRoot(p.getId()))
.map(ConversionUtils::oafProjectToBrokerProject, Encoders.bean(OaBrokerProject.class));
final Dataset<Relation> rels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_PROJECT))
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
.filter(r -> !ClusterUtils.isDedupRoot(r.getTarget()));
rels
.joinWith(projects, projects.col("id").equalTo(rels.col("target")), "inner")
.map(
t -> new RelatedProject(
t._1.getSource(),
t._1.getRelType(),
ConversionUtils.oafProjectToBrokerProject(t._2)),
Encoders.bean(RelatedProject.class))
.joinWith(projects, projects.col("openaireId").equalTo(rels.col("target")), "inner")
.map(t -> new RelatedProject(t._1.getSource(), t._2), Encoders.bean(RelatedProject.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);

22
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/PrepareRelatedPublicationsJob.java
View File

@ -17,9 +17,11 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.broker.objects.OaBrokerRelatedPublication;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedPublication;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Relation;
@ -32,8 +34,9 @@ public class PrepareRelatedPublicationsJob {
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(PrepareRelatedPublicationsJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
.toString(
PrepareRelatedPublicationsJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
@ -60,19 +63,24 @@ public class PrepareRelatedPublicationsJob {
final Dataset<OaBrokerRelatedPublication> pubs = ClusterUtils
.readPath(spark, graphPath + "/publication", Publication.class)
.filter(p -> !ClusterUtils.isDedupRoot(p.getId()))
.map(ConversionUtils::oafPublicationToBrokerPublication, Encoders.bean(OaBrokerRelatedPublication.class));
.map(
ConversionUtils::oafPublicationToBrokerPublication,
Encoders.bean(OaBrokerRelatedPublication.class));
final Dataset<Relation> rels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
.filter(r -> !ClusterUtils.isDedupRoot(r.getTarget()));
rels
.joinWith(pubs, pubs.col("openaireId").equalTo(rels.col("target")), "inner")
.map(t -> new RelatedPublication(
t._1.getSource(),
t._1.getRelType(),
t._2), Encoders.bean(RelatedPublication.class))
.map(t -> {
final RelatedPublication rel = new RelatedPublication(t._1.getSource(), t._2);
rel.getRelPublication().setRelType(t._1.getRelClass());
return rel;
}, Encoders.bean(RelatedPublication.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);

14
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/PrepareRelatedSoftwaresJob.java
View File

@ -17,9 +17,11 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.broker.objects.OaBrokerRelatedSoftware;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
import eu.dnetlib.dhp.broker.oa.util.ClusterUtils;
import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.Software;
@ -32,8 +34,9 @@ public class PrepareRelatedSoftwaresJob {
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(PrepareRelatedSoftwaresJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
.toString(
PrepareRelatedSoftwaresJob.class
.getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json")));
parser.parseArgument(args);
final Boolean isSparkSessionManaged = Optional
@ -64,15 +67,14 @@ public class PrepareRelatedSoftwaresJob {
final Dataset<Relation> rels = ClusterUtils
.readPath(spark, graphPath + "/relation", Relation.class)
.filter(r -> r.getRelType().equals(ModelConstants.RESULT_RESULT))
.filter(r -> !r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS))
.filter(r -> !ClusterUtils.isDedupRoot(r.getSource()))
.filter(r -> !ClusterUtils.isDedupRoot(r.getTarget()));
rels
.joinWith(softwares, softwares.col("openaireId").equalTo(rels.col("target")), "inner")
.map(t -> new RelatedSoftware(
t._1.getSource(),
t._1.getRelType(),
t._2), Encoders.bean(RelatedSoftware.class))
.map(t -> new RelatedSoftware(t._1.getSource(), t._2), Encoders.bean(RelatedSoftware.class))
.write()
.mode(SaveMode.Overwrite)
.json(relsPath);

13
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedDataset.java
View File

@ -11,16 +11,15 @@ public class RelatedDataset implements Serializable {
*
*/
private static final long serialVersionUID = 774487705184038324L;
private String source;
private String relType;
private OaBrokerRelatedDataset relDataset;
public RelatedDataset() {
}
public RelatedDataset(final String source, final String relType, final OaBrokerRelatedDataset relDataset) {
public RelatedDataset(final String source, final OaBrokerRelatedDataset relDataset) {
this.source = source;
this.relType = relType;
this.relDataset = relDataset;
}
@ -32,14 +31,6 @@ public class RelatedDataset implements Serializable {
this.source = source;
}
public String getRelType() {
return relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public OaBrokerRelatedDataset getRelDataset() {
return relDataset;
}

12
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedProject.java
View File

@ -13,15 +13,13 @@ public class RelatedProject implements Serializable {
private static final long serialVersionUID = 4941437626549329870L;
private String source;
private String relType;
private OaBrokerProject relProject;
public RelatedProject() {
}
public RelatedProject(final String source, final String relType, final OaBrokerProject relProject) {
public RelatedProject(final String source, final OaBrokerProject relProject) {
this.source = source;
this.relType = relType;
this.relProject = relProject;
}
@ -33,14 +31,6 @@ public class RelatedProject implements Serializable {
this.source = source;
}
public String getRelType() {
return relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public OaBrokerProject getRelProject() {
return relProject;
}

13
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedPublication.java
View File

@ -13,16 +13,13 @@ public class RelatedPublication implements Serializable {
private static final long serialVersionUID = 9021609640411395128L;
private String source;
private String relType;
private OaBrokerRelatedPublication relPublication;
public RelatedPublication() {
}
public RelatedPublication(final String source, final String relType,
final OaBrokerRelatedPublication relPublication) {
public RelatedPublication(final String source, final OaBrokerRelatedPublication relPublication) {
this.source = source;
this.relType = relType;
this.relPublication = relPublication;
}
@ -34,14 +31,6 @@ public class RelatedPublication implements Serializable {
this.source = source;
}
public String getRelType() {
return relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public OaBrokerRelatedPublication getRelPublication() {
return relPublication;
}

13
dhp-workflows/dhp-broker-events/src/main/java/eu/dnetlib/dhp/broker/oa/util/aggregators/withRels/RelatedSoftware.java
View File

@ -11,16 +11,15 @@ public class RelatedSoftware implements Serializable {
*
*/
private static final long serialVersionUID = 7573383356943300157L;
private String source;
private String relType;
private OaBrokerRelatedSoftware relSoftware;
public RelatedSoftware() {
}
public RelatedSoftware(final String source, final String relType, final OaBrokerRelatedSoftware relSoftware) {
public RelatedSoftware(final String source, final OaBrokerRelatedSoftware relSoftware) {
this.source = source;
this.relType = relType;
this.relSoftware = relSoftware;
}
@ -32,14 +31,6 @@ public class RelatedSoftware implements Serializable {
this.source = source;
}
public String getRelType() {
return relType;
}
public void setRelType(final String relType) {
this.relType = relType;
}
public OaBrokerRelatedSoftware getRelSoftware() {
return relSoftware;
}