forked from D-Net/dnet-hadoop
Merge branch 'master' into provision_indexing
This commit is contained in:
commit
ad40470040
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@ -20,7 +20,7 @@ public enum Topic {
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// ENRICHMENT MORE
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// ENRICHMENT MORE
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||||||
ENRICH_MORE_PID("ENRICH/MORE/PID"), ENRICH_MORE_OA_VERSION("ENRICH/MORE/OPENACCESS_VERSION"), ENRICH_MORE_ABSTRACT(
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ENRICH_MORE_PID("ENRICH/MORE/PID"), ENRICH_MORE_OA_VERSION("ENRICH/MORE/OPENACCESS_VERSION"), ENRICH_MORE_ABSTRACT(
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"ENRICH/MORE/ABSTRACT"), ENRICH_MORE_PUBLICATION_DATE("ENRICH/MORE/PUBLICATION_DATE"), ENRICH_MORE_PROJECT(
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"ENRICH/MORE/ABSTRACT"), ENRICH_MORE_PUBLICATION_DATE("ENRICH/MORE/PUBLICATION_DATE"), ENRICH_MORE_PROJECT(
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"ENRICH/MORE/PROJECT"), ENRICH_MORE_SUBJECT_MESHEUROPMC(
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"ENRICH/MORE/PROJECT"), ENRICH_MORE_SOFTWARE("ENRICH/MORE/SOFTWARE"), ENRICH_MORE_SUBJECT_MESHEUROPMC(
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"ENRICH/MORE/SUBJECT/MESHEUROPMC"), ENRICH_MORE_SUBJECT_ARXIV(
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"ENRICH/MORE/SUBJECT/MESHEUROPMC"), ENRICH_MORE_SUBJECT_ARXIV(
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"ENRICH/MORE/SUBJECT/ARXIV"), ENRICH_MORE_SUBJECT_JEL(
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"ENRICH/MORE/SUBJECT/ARXIV"), ENRICH_MORE_SUBJECT_JEL(
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"ENRICH/MORE/SUBJECT/JEL"), ENRICH_MORE_SUBJECT_DDC(
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"ENRICH/MORE/SUBJECT/JEL"), ENRICH_MORE_SUBJECT_DDC(
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@ -28,7 +28,21 @@ public enum Topic {
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"ENRICH/MORE/SUBJECT/ACM"), ENRICH_MORE_SUBJECT_RVK("ENRICH/MORE/SUBJECT/RVK"),
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"ENRICH/MORE/SUBJECT/ACM"), ENRICH_MORE_SUBJECT_RVK("ENRICH/MORE/SUBJECT/RVK"),
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// ADDITION
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// ADDITION
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ADD_BY_PROJECT("ADD/BY_PROJECT");
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ADD_BY_PROJECT("ADD/BY_PROJECT"),
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// OTHER RELS
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ENRICH_MISSING_PUBLICATION_IS_RELATED_TO(
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"ENRICH/MISSING/PUBLICATION/IS_RELATED_TO"), ENRICH_MISSING_PUBLICATION_REFERENCES(
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"ENRICH/MISSING/PUBLICATION/REFERENCES"), ENRICH_MISSING_PUBLICATION_IS_REFERENCED_BY(
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"ENRICH/MISSING/PUBLICATION/IS_REFERENCED_BY"), ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_TO(
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"ENRICH/MISSING/PUBLICATION/IS_SUPPLEMENTED_TO"), ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_BY(
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"ENRICH/MISSING/PUBLICATION/IS_SUPPLEMENTED_BY"),
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ENRICH_MISSING_DATASET_IS_RELATED_TO("ENRICH/MISSING/DATASET/IS_RELATED_TO"), ENRICH_MISSING_DATASET_REFERENCES(
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"ENRICH/MISSING/DATASET/REFERENCES"), ENRICH_MISSING_DATASET_IS_REFERENCED_BY(
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"ENRICH/MISSING/DATASET/IS_REFERENCED_BY"), ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_TO(
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"ENRICH/MISSING/DATASET/IS_SUPPLEMENTED_TO"), ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_BY(
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"ENRICH/MISSING/DATASET/IS_SUPPLEMENTED_BY"),;
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Topic(final String path) {
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Topic(final String path) {
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this.path = path;
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this.path = path;
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|
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@ -4,48 +4,101 @@ package eu.dnetlib.dhp.broker.oa;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
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|
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import java.util.ArrayList;
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import java.util.ArrayList;
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|
import java.util.Collection;
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import java.util.List;
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import java.util.List;
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|
import java.util.Map;
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import java.util.Optional;
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import java.util.Optional;
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import java.util.stream.Collectors;
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import java.util.stream.Collectors;
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|
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.io.IOUtils;
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|
import org.apache.commons.lang3.tuple.Pair;
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|
import org.apache.hadoop.io.compress.GzipCodec;
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import org.apache.spark.SparkConf;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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|
import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.api.java.function.MapFunction;
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|
import org.apache.spark.sql.Column;
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|
import org.apache.spark.sql.Dataset;
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|
import org.apache.spark.sql.Encoders;
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|
import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import org.apache.spark.sql.SparkSession;
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import org.slf4j.Logger;
|
import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
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|
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|
import com.fasterxml.jackson.databind.ObjectMapper;
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|
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.broker.model.Event;
|
import eu.dnetlib.dhp.broker.model.Event;
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import eu.dnetlib.dhp.broker.model.EventFactory;
|
import eu.dnetlib.dhp.broker.model.EventFactory;
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import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAbstract;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAbstract;
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import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAuthorOrcid;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingAuthorOrcid;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsReferencedBy;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsRelatedTo;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsSupplementedBy;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetIsSupplementedTo;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingDatasetReferences;
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import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingOpenAccess;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingOpenAccess;
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import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPid;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPid;
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||||||
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingProject;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingProject;
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import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationDate;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationDate;
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|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsReferencedBy;
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||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsRelatedTo;
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||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsSupplementedBy;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationIsSupplementedTo;
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||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingPublicationReferences;
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||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSoftware;
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||||||
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSubject;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMissingSubject;
|
||||||
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreOpenAccess;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreOpenAccess;
|
||||||
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMorePid;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMorePid;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreProject;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSoftware;
|
||||||
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSubject;
|
import eu.dnetlib.dhp.broker.oa.matchers.EnrichMoreSubject;
|
||||||
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
|
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.BrokerConstants;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.common.HdfsSupport;
|
import eu.dnetlib.dhp.common.HdfsSupport;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Project;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||||
|
|
||||||
public class GenerateEventsApplication {
|
public class GenerateEventsApplication {
|
||||||
|
|
||||||
private static final Logger log = LoggerFactory.getLogger(GenerateEventsApplication.class);
|
private static final Logger log = LoggerFactory.getLogger(GenerateEventsApplication.class);
|
||||||
|
|
||||||
private static final UpdateMatcher<?> enrichMissingAbstract = new EnrichMissingAbstract();
|
// Simple Matchers
|
||||||
private static final UpdateMatcher<?> enrichMissingAuthorOrcid = new EnrichMissingAuthorOrcid();
|
private static final UpdateMatcher<Result, ?> enrichMissingAbstract = new EnrichMissingAbstract();
|
||||||
private static final UpdateMatcher<?> enrichMissingOpenAccess = new EnrichMissingOpenAccess();
|
private static final UpdateMatcher<Result, ?> enrichMissingAuthorOrcid = new EnrichMissingAuthorOrcid();
|
||||||
private static final UpdateMatcher<?> enrichMissingPid = new EnrichMissingPid();
|
private static final UpdateMatcher<Result, ?> enrichMissingOpenAccess = new EnrichMissingOpenAccess();
|
||||||
private static final UpdateMatcher<?> enrichMissingProject = new EnrichMissingProject();
|
private static final UpdateMatcher<Result, ?> enrichMissingPid = new EnrichMissingPid();
|
||||||
private static final UpdateMatcher<?> enrichMissingPublicationDate = new EnrichMissingPublicationDate();
|
private static final UpdateMatcher<Result, ?> enrichMissingPublicationDate = new EnrichMissingPublicationDate();
|
||||||
private static final UpdateMatcher<?> enrichMissingSubject = new EnrichMissingSubject();
|
private static final UpdateMatcher<Result, ?> enrichMissingSubject = new EnrichMissingSubject();
|
||||||
private static final UpdateMatcher<?> enrichMoreOpenAccess = new EnrichMoreOpenAccess();
|
private static final UpdateMatcher<Result, ?> enrichMoreOpenAccess = new EnrichMoreOpenAccess();
|
||||||
private static final UpdateMatcher<?> enrichMorePid = new EnrichMorePid();
|
private static final UpdateMatcher<Result, ?> enrichMorePid = new EnrichMorePid();
|
||||||
private static final UpdateMatcher<?> enrichMoreSubject = new EnrichMoreSubject();
|
private static final UpdateMatcher<Result, ?> enrichMoreSubject = new EnrichMoreSubject();
|
||||||
|
|
||||||
|
// Advanced matchers
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Project>>, ?> enrichMissingProject = new EnrichMissingProject();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Project>>, ?> enrichMoreProject = new EnrichMoreProject();
|
||||||
|
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Software>>, ?> enrichMissingSoftware = new EnrichMissingSoftware();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Software>>, ?> enrichMoreSoftware = new EnrichMoreSoftware();
|
||||||
|
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Publication>>, ?> enrichMisissingPublicationIsRelatedTo = new EnrichMissingPublicationIsRelatedTo();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Publication>>, ?> enrichMissingPublicationIsReferencedBy = new EnrichMissingPublicationIsReferencedBy();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Publication>>, ?> enrichMissingPublicationReferences = new EnrichMissingPublicationReferences();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Publication>>, ?> enrichMissingPublicationIsSupplementedTo = new EnrichMissingPublicationIsSupplementedTo();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<Publication>>, ?> enrichMissingPublicationIsSupplementedBy = new EnrichMissingPublicationIsSupplementedBy();
|
||||||
|
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>, ?> enrichMisissingDatasetIsRelatedTo = new EnrichMissingDatasetIsRelatedTo();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>, ?> enrichMissingDatasetIsReferencedBy = new EnrichMissingDatasetIsReferencedBy();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>, ?> enrichMissingDatasetReferences = new EnrichMissingDatasetReferences();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>, ?> enrichMissingDatasetIsSupplementedTo = new EnrichMissingDatasetIsSupplementedTo();
|
||||||
|
private static final UpdateMatcher<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>, ?> enrichMissingDatasetIsSupplementedBy = new EnrichMissingDatasetIsSupplementedBy();
|
||||||
|
|
||||||
|
public static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
|
||||||
|
|
||||||
public static void main(final String[] args) throws Exception {
|
public static void main(final String[] args) throws Exception {
|
||||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
||||||
|
@ -68,9 +121,19 @@ public class GenerateEventsApplication {
|
||||||
log.info("eventsPath: {}", eventsPath);
|
log.info("eventsPath: {}", eventsPath);
|
||||||
|
|
||||||
final SparkConf conf = new SparkConf();
|
final SparkConf conf = new SparkConf();
|
||||||
|
|
||||||
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
|
runWithSparkSession(conf, isSparkSessionManaged, spark -> {
|
||||||
|
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||||
removeOutputDir(spark, eventsPath);
|
removeOutputDir(spark, eventsPath);
|
||||||
generateEvents(spark, graphPath, eventsPath);
|
|
||||||
|
final JavaRDD<Event> eventsRdd = sc.emptyRDD();
|
||||||
|
|
||||||
|
eventsRdd.union(generateSimpleEvents(spark, graphPath, Publication.class));
|
||||||
|
eventsRdd.union(generateSimpleEvents(spark, graphPath, eu.dnetlib.dhp.schema.oaf.Dataset.class));
|
||||||
|
eventsRdd.union(generateSimpleEvents(spark, graphPath, Software.class));
|
||||||
|
eventsRdd.union(generateSimpleEvents(spark, graphPath, OtherResearchProduct.class));
|
||||||
|
|
||||||
|
eventsRdd.saveAsTextFile(eventsPath, GzipCodec.class);
|
||||||
});
|
});
|
||||||
|
|
||||||
}
|
}
|
||||||
|
@ -79,11 +142,34 @@ public class GenerateEventsApplication {
|
||||||
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
|
HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
|
||||||
}
|
}
|
||||||
|
|
||||||
private static void generateEvents(final SparkSession spark, final String graphPath, final String eventsPath) {
|
private static <R extends Result> JavaRDD<Event> generateSimpleEvents(final SparkSession spark,
|
||||||
// TODO
|
final String graphPath,
|
||||||
|
final Class<R> resultClazz) {
|
||||||
|
|
||||||
|
final Dataset<R> results = readPath(
|
||||||
|
spark, graphPath + "/" + resultClazz.getSimpleName().toLowerCase(), resultClazz)
|
||||||
|
.filter(r -> r.getDataInfo().getDeletedbyinference());
|
||||||
|
|
||||||
|
final Dataset<Relation> rels = readPath(spark, graphPath + "/relation", Relation.class)
|
||||||
|
.filter(r -> r.getRelClass().equals(BrokerConstants.IS_MERGED_IN_CLASS));
|
||||||
|
|
||||||
|
final Column c = null; // TODO
|
||||||
|
|
||||||
|
final Dataset<Row> aa = results
|
||||||
|
.joinWith(rels, results.col("id").equalTo(rels.col("source")), "inner")
|
||||||
|
.groupBy(rels.col("target"))
|
||||||
|
.agg(c)
|
||||||
|
.filter(x -> x.size() > 1)
|
||||||
|
// generateSimpleEvents(...)
|
||||||
|
// flatMap()
|
||||||
|
// toRdd()
|
||||||
|
;
|
||||||
|
|
||||||
|
return null;
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
private List<Event> generateEvents(final Result... children) {
|
private List<Event> generateSimpleEvents(final Collection<Result> children) {
|
||||||
final List<UpdateInfo<?>> list = new ArrayList<>();
|
final List<UpdateInfo<?>> list = new ArrayList<>();
|
||||||
|
|
||||||
for (final Result target : children) {
|
for (final Result target : children) {
|
||||||
|
@ -91,7 +177,6 @@ public class GenerateEventsApplication {
|
||||||
list.addAll(enrichMissingAuthorOrcid.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMissingAuthorOrcid.searchUpdatesForRecord(target, children));
|
||||||
list.addAll(enrichMissingOpenAccess.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMissingOpenAccess.searchUpdatesForRecord(target, children));
|
||||||
list.addAll(enrichMissingPid.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMissingPid.searchUpdatesForRecord(target, children));
|
||||||
list.addAll(enrichMissingProject.searchUpdatesForRecord(target, children));
|
|
||||||
list.addAll(enrichMissingPublicationDate.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMissingPublicationDate.searchUpdatesForRecord(target, children));
|
||||||
list.addAll(enrichMissingSubject.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMissingSubject.searchUpdatesForRecord(target, children));
|
||||||
list.addAll(enrichMoreOpenAccess.searchUpdatesForRecord(target, children));
|
list.addAll(enrichMoreOpenAccess.searchUpdatesForRecord(target, children));
|
||||||
|
@ -102,4 +187,94 @@ public class GenerateEventsApplication {
|
||||||
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private List<Event> generateProjectsEvents(final Collection<Pair<Result, List<Project>>> childrenWithProjects) {
|
||||||
|
final List<UpdateInfo<?>> list = new ArrayList<>();
|
||||||
|
|
||||||
|
for (final Pair<Result, List<Project>> target : childrenWithProjects) {
|
||||||
|
list.addAll(enrichMissingProject.searchUpdatesForRecord(target, childrenWithProjects));
|
||||||
|
list.addAll(enrichMoreProject.searchUpdatesForRecord(target, childrenWithProjects));
|
||||||
|
}
|
||||||
|
|
||||||
|
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
||||||
|
}
|
||||||
|
|
||||||
|
private List<Event> generateSoftwareEvents(final Collection<Pair<Result, List<Software>>> childrenWithSoftwares) {
|
||||||
|
final List<UpdateInfo<?>> list = new ArrayList<>();
|
||||||
|
|
||||||
|
for (final Pair<Result, List<Software>> target : childrenWithSoftwares) {
|
||||||
|
list.addAll(enrichMissingSoftware.searchUpdatesForRecord(target, childrenWithSoftwares));
|
||||||
|
list.addAll(enrichMoreSoftware.searchUpdatesForRecord(target, childrenWithSoftwares));
|
||||||
|
}
|
||||||
|
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
||||||
|
}
|
||||||
|
|
||||||
|
private List<Event> generatePublicationRelatedEvents(final String relType,
|
||||||
|
final Collection<Pair<Result, Map<String, List<Publication>>>> childrenWithRels) {
|
||||||
|
|
||||||
|
final List<UpdateInfo<?>> list = new ArrayList<>();
|
||||||
|
|
||||||
|
final List<Pair<Result, List<Publication>>> cleanedChildrens = childrenWithRels
|
||||||
|
.stream()
|
||||||
|
.filter(p -> p.getRight().containsKey(relType))
|
||||||
|
.map(p -> Pair.of(p.getLeft(), p.getRight().get(relType)))
|
||||||
|
.filter(p -> p.getRight().size() > 0)
|
||||||
|
.collect(Collectors.toList());
|
||||||
|
|
||||||
|
for (final Pair<Result, List<Publication>> target : cleanedChildrens) {
|
||||||
|
if (relType.equals("isRelatedTo")) {
|
||||||
|
list.addAll(enrichMisissingPublicationIsRelatedTo.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("references")) {
|
||||||
|
list.addAll(enrichMissingPublicationReferences.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isReferencedBy")) {
|
||||||
|
list.addAll(enrichMissingPublicationIsReferencedBy.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isSupplementedTo")) {
|
||||||
|
list.addAll(enrichMissingPublicationIsSupplementedTo.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isSupplementedBy")) {
|
||||||
|
list.addAll(enrichMissingPublicationIsSupplementedBy.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
private List<Event> generateDatasetRelatedEvents(final String relType,
|
||||||
|
final Collection<Pair<Result, Map<String, List<eu.dnetlib.dhp.schema.oaf.Dataset>>>> childrenWithRels) {
|
||||||
|
|
||||||
|
final List<UpdateInfo<?>> list = new ArrayList<>();
|
||||||
|
|
||||||
|
final List<Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>>> cleanedChildrens = childrenWithRels
|
||||||
|
.stream()
|
||||||
|
.filter(p -> p.getRight().containsKey(relType))
|
||||||
|
.map(p -> Pair.of(p.getLeft(), p.getRight().get(relType)))
|
||||||
|
.filter(p -> p.getRight().size() > 0)
|
||||||
|
.collect(Collectors.toList());
|
||||||
|
|
||||||
|
for (final Pair<Result, List<eu.dnetlib.dhp.schema.oaf.Dataset>> target : cleanedChildrens) {
|
||||||
|
if (relType.equals("isRelatedTo")) {
|
||||||
|
list.addAll(enrichMisissingDatasetIsRelatedTo.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("references")) {
|
||||||
|
list.addAll(enrichMissingDatasetReferences.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isReferencedBy")) {
|
||||||
|
list.addAll(enrichMissingDatasetIsReferencedBy.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isSupplementedTo")) {
|
||||||
|
list.addAll(enrichMissingDatasetIsSupplementedTo.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
} else if (relType.equals("isSupplementedBy")) {
|
||||||
|
list.addAll(enrichMissingDatasetIsSupplementedBy.searchUpdatesForRecord(target, cleanedChildrens));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
return list.stream().map(EventFactory::newBrokerEvent).collect(Collectors.toList());
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
public static <R> Dataset<R> readPath(
|
||||||
|
final SparkSession spark,
|
||||||
|
final String inputPath,
|
||||||
|
final Class<R> clazz) {
|
||||||
|
return spark
|
||||||
|
.read()
|
||||||
|
.textFile(inputPath)
|
||||||
|
.map((MapFunction<String, R>) value -> OBJECT_MAPPER.readValue(value, clazz), Encoders.bean(clazz));
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -9,7 +9,7 @@ import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingAbstract extends UpdateMatcher<String> {
|
public class EnrichMissingAbstract extends UpdateMatcher<Result, String> {
|
||||||
|
|
||||||
public EnrichMissingAbstract() {
|
public EnrichMissingAbstract() {
|
||||||
super(false);
|
super(false);
|
||||||
|
@ -24,7 +24,8 @@ public class EnrichMissingAbstract extends UpdateMatcher<String> {
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public UpdateInfo<String> generateUpdateInfo(final String highlightValue, final Result source,
|
public UpdateInfo<String> generateUpdateInfo(final String highlightValue,
|
||||||
|
final Result source,
|
||||||
final Result target) {
|
final Result target) {
|
||||||
return new UpdateInfo<>(
|
return new UpdateInfo<>(
|
||||||
Topic.ENRICH_MISSING_ABSTRACT,
|
Topic.ENRICH_MISSING_ABSTRACT,
|
||||||
|
|
|
@ -10,7 +10,7 @@ import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingAuthorOrcid extends UpdateMatcher<Pair<String, String>> {
|
public class EnrichMissingAuthorOrcid extends UpdateMatcher<Result, Pair<String, String>> {
|
||||||
|
|
||||||
public EnrichMissingAuthorOrcid() {
|
public EnrichMissingAuthorOrcid() {
|
||||||
super(true);
|
super(true);
|
||||||
|
@ -24,7 +24,8 @@ public class EnrichMissingAuthorOrcid extends UpdateMatcher<Pair<String, String>
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public UpdateInfo<Pair<String, String>> generateUpdateInfo(final Pair<String, String> highlightValue,
|
public UpdateInfo<Pair<String, String>> generateUpdateInfo(final Pair<String, String> highlightValue,
|
||||||
final Result source, final Result target) {
|
final Result source,
|
||||||
|
final Result target) {
|
||||||
return new UpdateInfo<>(
|
return new UpdateInfo<>(
|
||||||
Topic.ENRICH_MISSING_AUTHOR_ORCID,
|
Topic.ENRICH_MISSING_AUTHOR_ORCID,
|
||||||
highlightValue, source, target,
|
highlightValue, source, target,
|
||||||
|
|
|
@ -0,0 +1,38 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingDatasetIsReferencedBy
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Dataset>>, eu.dnetlib.broker.objects.Dataset> {
|
||||||
|
|
||||||
|
public EnrichMissingDatasetIsReferencedBy() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Dataset>> findUpdates(final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Dataset> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Dataset highlightValue,
|
||||||
|
final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_DATASET_IS_REFERENCED_BY,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> p.getDatasets().add(rel),
|
||||||
|
rel -> rel.getInstances().get(0).getUrl());
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,38 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingDatasetIsRelatedTo
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Dataset>>, eu.dnetlib.broker.objects.Dataset> {
|
||||||
|
|
||||||
|
public EnrichMissingDatasetIsRelatedTo() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Dataset>> findUpdates(final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Dataset> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Dataset highlightValue,
|
||||||
|
final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_DATASET_IS_RELATED_TO,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> p.getDatasets().add(rel),
|
||||||
|
rel -> rel.getInstances().get(0).getUrl());
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,38 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingDatasetIsSupplementedBy
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Dataset>>, eu.dnetlib.broker.objects.Dataset> {
|
||||||
|
|
||||||
|
public EnrichMissingDatasetIsSupplementedBy() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Dataset>> findUpdates(final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Dataset> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Dataset highlightValue,
|
||||||
|
final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_BY,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> p.getDatasets().add(rel),
|
||||||
|
rel -> rel.getInstances().get(0).getUrl());
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,38 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingDatasetIsSupplementedTo
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Dataset>>, eu.dnetlib.broker.objects.Dataset> {
|
||||||
|
|
||||||
|
public EnrichMissingDatasetIsSupplementedTo() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Dataset>> findUpdates(final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Dataset> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Dataset highlightValue,
|
||||||
|
final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_DATASET_IS_SUPPLEMENTED_TO,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> p.getDatasets().add(rel),
|
||||||
|
rel -> rel.getInstances().get(0).getUrl());
|
||||||
|
}
|
||||||
|
}
|
|
@ -0,0 +1,38 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingDatasetReferences
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Dataset>>, eu.dnetlib.broker.objects.Dataset> {
|
||||||
|
|
||||||
|
public EnrichMissingDatasetReferences() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Dataset>> findUpdates(final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return null;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Dataset> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Dataset highlightValue,
|
||||||
|
final Pair<Result, List<Dataset>> source,
|
||||||
|
final Pair<Result, List<Dataset>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_DATASET_REFERENCES,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> p.getDatasets().add(rel),
|
||||||
|
rel -> rel.getInstances().get(0).getUrl());
|
||||||
|
}
|
||||||
|
}
|
|
@ -12,7 +12,7 @@ import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingOpenAccess extends UpdateMatcher<Instance> {
|
public class EnrichMissingOpenAccess extends UpdateMatcher<Result, Instance> {
|
||||||
|
|
||||||
public EnrichMissingOpenAccess() {
|
public EnrichMissingOpenAccess() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -11,7 +11,7 @@ import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingPid extends UpdateMatcher<Pid> {
|
public class EnrichMissingPid extends UpdateMatcher<Result, Pid> {
|
||||||
|
|
||||||
public EnrichMissingPid() {
|
public EnrichMissingPid() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -4,30 +4,35 @@ package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
import java.util.Arrays;
|
import java.util.Arrays;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
import eu.dnetlib.broker.objects.Project;
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
import eu.dnetlib.dhp.broker.model.Topic;
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Project;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingProject extends UpdateMatcher<Project> {
|
public class EnrichMissingProject
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Project>>, eu.dnetlib.broker.objects.Project> {
|
||||||
|
|
||||||
public EnrichMissingProject() {
|
public EnrichMissingProject() {
|
||||||
super(true);
|
super(true);
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
protected List<UpdateInfo<Project>> findUpdates(final Result source, final Result target) {
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Project>> findUpdates(final Pair<Result, List<Project>> source,
|
||||||
// return Arrays.asList(new EnrichMissingAbstract("xxxxxxx", 0.9f));
|
final Pair<Result, List<Project>> target) {
|
||||||
|
// TODO
|
||||||
return Arrays.asList();
|
return Arrays.asList();
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public UpdateInfo<Project> generateUpdateInfo(final Project highlightValue,
|
public UpdateInfo<eu.dnetlib.broker.objects.Project> generateUpdateInfo(
|
||||||
final Result source,
|
final eu.dnetlib.broker.objects.Project highlightValue,
|
||||||
final Result target) {
|
final Pair<Result, List<Project>> source,
|
||||||
|
final Pair<Result, List<Project>> target) {
|
||||||
return new UpdateInfo<>(
|
return new UpdateInfo<>(
|
||||||
Topic.ENRICH_MISSING_PROJECT,
|
Topic.ENRICH_MISSING_PROJECT,
|
||||||
highlightValue, source, target,
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
(p, prj) -> p.getProjects().add(prj),
|
(p, prj) -> p.getProjects().add(prj),
|
||||||
prj -> prj.getFunder() + "::" + prj.getFundingProgram() + prj.getCode());
|
prj -> prj.getFunder() + "::" + prj.getFundingProgram() + prj.getCode());
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,6 +1,7 @@
|
||||||
|
|
||||||
package eu.dnetlib.dhp.broker.oa.matchers;
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.ArrayList;
|
||||||
import java.util.Arrays;
|
import java.util.Arrays;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
|
@ -8,7 +9,7 @@ import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMissingPublicationDate extends UpdateMatcher<String> {
|
public class EnrichMissingPublicationDate extends UpdateMatcher<Result, String> {
|
||||||
|
|
||||||
public EnrichMissingPublicationDate() {
|
public EnrichMissingPublicationDate() {
|
||||||
super(false);
|
super(false);
|
||||||
|
@ -16,12 +17,15 @@ public class EnrichMissingPublicationDate extends UpdateMatcher<String> {
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
protected List<UpdateInfo<String>> findUpdates(final Result source, final Result target) {
|
protected List<UpdateInfo<String>> findUpdates(final Result source, final Result target) {
|
||||||
// return Arrays.asList(new EnrichMissingAbstract("xxxxxxx", 0.9f));
|
if (isMissing(target.getDateofacceptance()) && !isMissing(source.getDateofacceptance())) {
|
||||||
return Arrays.asList();
|
return Arrays.asList(generateUpdateInfo(source.getDateofacceptance().getValue(), source, target));
|
||||||
|
}
|
||||||
|
return new ArrayList<>();
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public UpdateInfo<String> generateUpdateInfo(final String highlightValue, final Result source,
|
public UpdateInfo<String> generateUpdateInfo(final String highlightValue,
|
||||||
|
final Result source,
|
||||||
final Result target) {
|
final Result target) {
|
||||||
return new UpdateInfo<>(
|
return new UpdateInfo<>(
|
||||||
Topic.ENRICH_MISSING_PUBLICATION_DATE,
|
Topic.ENRICH_MISSING_PUBLICATION_DATE,
|
||||||
|
|
|
@ -0,0 +1,42 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingPublicationIsReferencedBy
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Publication>>, eu.dnetlib.broker.objects.Publication> {
|
||||||
|
|
||||||
|
public EnrichMissingPublicationIsReferencedBy() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Publication>> findUpdates(
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Publication> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Publication highlightValue,
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_PUBLICATION_IS_REFERENCED_BY,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> {
|
||||||
|
}, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common
|
||||||
|
rel -> rel.getOriginalId());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,42 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingPublicationIsRelatedTo
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Publication>>, eu.dnetlib.broker.objects.Publication> {
|
||||||
|
|
||||||
|
public EnrichMissingPublicationIsRelatedTo() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Publication>> findUpdates(
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Publication> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Publication highlightValue,
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_PUBLICATION_IS_RELATED_TO,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> {
|
||||||
|
}, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common
|
||||||
|
rel -> rel.getOriginalId());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,42 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingPublicationIsSupplementedBy
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Publication>>, eu.dnetlib.broker.objects.Publication> {
|
||||||
|
|
||||||
|
public EnrichMissingPublicationIsSupplementedBy() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Publication>> findUpdates(
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Publication> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Publication highlightValue,
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_BY,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> {
|
||||||
|
}, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common
|
||||||
|
rel -> rel.getOriginalId());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,42 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingPublicationIsSupplementedTo
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Publication>>, eu.dnetlib.broker.objects.Publication> {
|
||||||
|
|
||||||
|
public EnrichMissingPublicationIsSupplementedTo() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Publication>> findUpdates(
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Publication> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Publication highlightValue,
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_PUBLICATION_IS_SUPPLEMENTED_TO,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> {
|
||||||
|
}, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common
|
||||||
|
rel -> rel.getOriginalId());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,42 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMissingPublicationReferences
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Publication>>, eu.dnetlib.broker.objects.Publication> {
|
||||||
|
|
||||||
|
public EnrichMissingPublicationReferences() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Publication>> findUpdates(
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
// TODO Auto-generated method stub
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected UpdateInfo<eu.dnetlib.broker.objects.Publication> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Publication highlightValue,
|
||||||
|
final Pair<Result, List<Publication>> source,
|
||||||
|
final Pair<Result, List<Publication>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_PUBLICATION_REFERENCES,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, rel) -> {
|
||||||
|
}, // p.getPublications().add(rel), //TODO available in the future release of dnet-openaire-broker-common
|
||||||
|
rel -> rel.getOriginalId());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,41 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||||
|
|
||||||
|
public class EnrichMissingSoftware
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Software>>, eu.dnetlib.broker.objects.Software> {
|
||||||
|
|
||||||
|
public EnrichMissingSoftware() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Software>> findUpdates(
|
||||||
|
final Pair<Result, List<Software>> source,
|
||||||
|
final Pair<Result, List<Software>> target) {
|
||||||
|
// TODO
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public UpdateInfo<eu.dnetlib.broker.objects.Software> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Software highlightValue,
|
||||||
|
final Pair<Result, List<Software>> source,
|
||||||
|
final Pair<Result, List<Software>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MISSING_SOFTWARE,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, s) -> p.getSoftwares().add(s),
|
||||||
|
s -> s.getName());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -14,7 +14,7 @@ import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||||
|
|
||||||
public class EnrichMissingSubject extends UpdateMatcher<Pair<String, String>> {
|
public class EnrichMissingSubject extends UpdateMatcher<Result, Pair<String, String>> {
|
||||||
|
|
||||||
public EnrichMissingSubject() {
|
public EnrichMissingSubject() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -12,7 +12,7 @@ import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMoreOpenAccess extends UpdateMatcher<Instance> {
|
public class EnrichMoreOpenAccess extends UpdateMatcher<Result, Instance> {
|
||||||
|
|
||||||
public EnrichMoreOpenAccess() {
|
public EnrichMoreOpenAccess() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -11,7 +11,7 @@ import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMorePid extends UpdateMatcher<Pid> {
|
public class EnrichMorePid extends UpdateMatcher<Result, Pid> {
|
||||||
|
|
||||||
public EnrichMorePid() {
|
public EnrichMorePid() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -0,0 +1,39 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Project;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
|
public class EnrichMoreProject extends UpdateMatcher<Pair<Result, List<Project>>, eu.dnetlib.broker.objects.Project> {
|
||||||
|
|
||||||
|
public EnrichMoreProject() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Project>> findUpdates(final Pair<Result, List<Project>> source,
|
||||||
|
final Pair<Result, List<Project>> target) {
|
||||||
|
// TODO
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public UpdateInfo<eu.dnetlib.broker.objects.Project> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Project highlightValue,
|
||||||
|
final Pair<Result, List<Project>> source,
|
||||||
|
final Pair<Result, List<Project>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MORE_PROJECT,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, prj) -> p.getProjects().add(prj),
|
||||||
|
prj -> prj.getFunder() + "::" + prj.getFundingProgram() + prj.getCode());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,41 @@
|
||||||
|
|
||||||
|
package eu.dnetlib.dhp.broker.oa.matchers;
|
||||||
|
|
||||||
|
import java.util.Arrays;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import org.apache.commons.lang3.tuple.Pair;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.broker.model.Topic;
|
||||||
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||||
|
|
||||||
|
public class EnrichMoreSoftware
|
||||||
|
extends UpdateMatcher<Pair<Result, List<Software>>, eu.dnetlib.broker.objects.Software> {
|
||||||
|
|
||||||
|
public EnrichMoreSoftware() {
|
||||||
|
super(true);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
protected List<UpdateInfo<eu.dnetlib.broker.objects.Software>> findUpdates(
|
||||||
|
final Pair<Result, List<Software>> source,
|
||||||
|
final Pair<Result, List<Software>> target) {
|
||||||
|
// TODO
|
||||||
|
return Arrays.asList();
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public UpdateInfo<eu.dnetlib.broker.objects.Software> generateUpdateInfo(
|
||||||
|
final eu.dnetlib.broker.objects.Software highlightValue,
|
||||||
|
final Pair<Result, List<Software>> source,
|
||||||
|
final Pair<Result, List<Software>> target) {
|
||||||
|
return new UpdateInfo<>(
|
||||||
|
Topic.ENRICH_MORE_SOFTWARE,
|
||||||
|
highlightValue, source.getLeft(), target.getLeft(),
|
||||||
|
(p, s) -> p.getSoftwares().add(s),
|
||||||
|
s -> s.getName());
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -12,7 +12,7 @@ import eu.dnetlib.dhp.broker.oa.util.ConversionUtils;
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
public class EnrichMoreSubject extends UpdateMatcher<Pair<String, String>> {
|
public class EnrichMoreSubject extends UpdateMatcher<Result, Pair<String, String>> {
|
||||||
|
|
||||||
public EnrichMoreSubject() {
|
public EnrichMoreSubject() {
|
||||||
super(true);
|
super(true);
|
||||||
|
|
|
@ -12,9 +12,8 @@ import org.apache.commons.lang3.StringUtils;
|
||||||
|
|
||||||
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
import eu.dnetlib.dhp.broker.oa.util.UpdateInfo;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Field;
|
import eu.dnetlib.dhp.schema.oaf.Field;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
|
||||||
|
|
||||||
public abstract class UpdateMatcher<T> {
|
public abstract class UpdateMatcher<K, T> {
|
||||||
|
|
||||||
private final boolean multipleUpdate;
|
private final boolean multipleUpdate;
|
||||||
|
|
||||||
|
@ -22,11 +21,11 @@ public abstract class UpdateMatcher<T> {
|
||||||
this.multipleUpdate = multipleUpdate;
|
this.multipleUpdate = multipleUpdate;
|
||||||
}
|
}
|
||||||
|
|
||||||
public Collection<UpdateInfo<T>> searchUpdatesForRecord(final Result res, final Result... others) {
|
public Collection<UpdateInfo<T>> searchUpdatesForRecord(final K res, final Collection<K> others) {
|
||||||
|
|
||||||
final Map<String, UpdateInfo<T>> infoMap = new HashMap<>();
|
final Map<String, UpdateInfo<T>> infoMap = new HashMap<>();
|
||||||
|
|
||||||
for (final Result source : others) {
|
for (final K source : others) {
|
||||||
if (source != res) {
|
if (source != res) {
|
||||||
for (final UpdateInfo<T> info : findUpdates(source, res)) {
|
for (final UpdateInfo<T> info : findUpdates(source, res)) {
|
||||||
final String s = DigestUtils.md5Hex(info.getHighlightValueAsString());
|
final String s = DigestUtils.md5Hex(info.getHighlightValueAsString());
|
||||||
|
@ -52,13 +51,18 @@ public abstract class UpdateMatcher<T> {
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
protected abstract List<UpdateInfo<T>> findUpdates(Result source, Result target);
|
protected abstract List<UpdateInfo<T>> findUpdates(K source, K target);
|
||||||
|
|
||||||
protected abstract UpdateInfo<T> generateUpdateInfo(final T highlightValue, final Result source,
|
protected abstract UpdateInfo<T> generateUpdateInfo(final T highlightValue,
|
||||||
final Result target);
|
final K source,
|
||||||
|
final K target);
|
||||||
|
|
||||||
protected static boolean isMissing(final List<Field<String>> list) {
|
protected static boolean isMissing(final List<Field<String>> list) {
|
||||||
return list == null || list.isEmpty() || StringUtils.isBlank(list.get(0).getValue());
|
return list == null || list.isEmpty() || StringUtils.isBlank(list.get(0).getValue());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
protected boolean isMissing(final Field<String> field) {
|
||||||
|
return field == null || StringUtils.isBlank(field.getValue());
|
||||||
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -4,4 +4,6 @@ package eu.dnetlib.dhp.broker.oa.util;
|
||||||
public class BrokerConstants {
|
public class BrokerConstants {
|
||||||
|
|
||||||
public final static String OPEN_ACCESS = "OPEN";
|
public final static String OPEN_ACCESS = "OPEN";
|
||||||
|
public final static String IS_MERGED_IN_CLASS = "isMergedIn";
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -0,0 +1,159 @@
|
||||||
|
package eu.dnetlib.dhp.oa.dedup;
|
||||||
|
|
||||||
|
import com.wcohen.ss.JaroWinkler;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Author;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||||
|
import eu.dnetlib.pace.model.Person;
|
||||||
|
import org.apache.commons.lang3.StringUtils;
|
||||||
|
import scala.Tuple2;
|
||||||
|
|
||||||
|
import java.text.Normalizer;
|
||||||
|
import java.util.*;
|
||||||
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
|
public class AuthorMerger {
|
||||||
|
|
||||||
|
private static final Double THRESHOLD = 0.95;
|
||||||
|
|
||||||
|
public static List<Author> merge(List<List<Author>> authors){
|
||||||
|
|
||||||
|
authors.sort(new Comparator<List<Author>>() {
|
||||||
|
@Override
|
||||||
|
public int compare(List<Author> o1, List<Author> o2) {
|
||||||
|
return -Integer.compare(countAuthorsPids(o1), countAuthorsPids(o2));
|
||||||
|
}
|
||||||
|
});
|
||||||
|
|
||||||
|
List<Author> author = new ArrayList<>();
|
||||||
|
|
||||||
|
for(List<Author> a : authors){
|
||||||
|
author = mergeAuthor(author, a);
|
||||||
|
}
|
||||||
|
|
||||||
|
return author;
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
public static List<Author> mergeAuthor(final List<Author> a, final List<Author> b) {
|
||||||
|
int pa = countAuthorsPids(a);
|
||||||
|
int pb = countAuthorsPids(b);
|
||||||
|
List<Author> base, enrich;
|
||||||
|
int sa = authorsSize(a);
|
||||||
|
int sb = authorsSize(b);
|
||||||
|
|
||||||
|
if (pa == pb) {
|
||||||
|
base = sa > sb ? a : b;
|
||||||
|
enrich = sa > sb ? b : a;
|
||||||
|
} else {
|
||||||
|
base = pa > pb ? a : b;
|
||||||
|
enrich = pa > pb ? b : a;
|
||||||
|
}
|
||||||
|
enrichPidFromList(base, enrich);
|
||||||
|
return base;
|
||||||
|
}
|
||||||
|
|
||||||
|
private static void enrichPidFromList(List<Author> base, List<Author> enrich) {
|
||||||
|
if (base == null || enrich == null)
|
||||||
|
return;
|
||||||
|
final Map<String, Author> basePidAuthorMap = base
|
||||||
|
.stream()
|
||||||
|
.filter(a -> a.getPid() != null && a.getPid().size() > 0)
|
||||||
|
.flatMap(
|
||||||
|
a -> a
|
||||||
|
.getPid()
|
||||||
|
.stream()
|
||||||
|
.map(p -> new Tuple2<>(pidToComparableString(p), a)))
|
||||||
|
.collect(Collectors.toMap(Tuple2::_1, Tuple2::_2, (x1, x2) -> x1));
|
||||||
|
|
||||||
|
final List<Tuple2<StructuredProperty, Author>> pidToEnrich = enrich
|
||||||
|
.stream()
|
||||||
|
.filter(a -> a.getPid() != null && a.getPid().size() > 0)
|
||||||
|
.flatMap(
|
||||||
|
a -> a
|
||||||
|
.getPid()
|
||||||
|
.stream()
|
||||||
|
.filter(p -> !basePidAuthorMap.containsKey(pidToComparableString(p)))
|
||||||
|
.map(p -> new Tuple2<>(p, a)))
|
||||||
|
.collect(Collectors.toList());
|
||||||
|
|
||||||
|
pidToEnrich
|
||||||
|
.forEach(
|
||||||
|
a -> {
|
||||||
|
Optional<Tuple2<Double, Author>> simAuthor = base
|
||||||
|
.stream()
|
||||||
|
.map(ba -> new Tuple2<>(sim(ba, a._2()), ba))
|
||||||
|
.max(Comparator.comparing(Tuple2::_1));
|
||||||
|
if (simAuthor.isPresent() && simAuthor.get()._1() > THRESHOLD) {
|
||||||
|
Author r = simAuthor.get()._2();
|
||||||
|
if (r.getPid() == null) {
|
||||||
|
r.setPid(new ArrayList<>());
|
||||||
|
}
|
||||||
|
r.getPid().add(a._1());
|
||||||
|
}
|
||||||
|
});
|
||||||
|
}
|
||||||
|
|
||||||
|
public static String pidToComparableString(StructuredProperty pid){
|
||||||
|
return (pid.getQualifier()!=null? pid.getQualifier().getClassid()!=null?pid.getQualifier().getClassid().toLowerCase():"":"") + (pid.getValue()!=null? pid.getValue().toLowerCase():"");
|
||||||
|
}
|
||||||
|
|
||||||
|
public static int countAuthorsPids(List<Author> authors) {
|
||||||
|
if (authors == null)
|
||||||
|
return 0;
|
||||||
|
|
||||||
|
return (int) authors.stream().filter(AuthorMerger::hasPid).count();
|
||||||
|
}
|
||||||
|
|
||||||
|
private static int authorsSize(List<Author> authors) {
|
||||||
|
if (authors == null)
|
||||||
|
return 0;
|
||||||
|
return authors.size();
|
||||||
|
}
|
||||||
|
|
||||||
|
private static Double sim(Author a, Author b) {
|
||||||
|
|
||||||
|
final Person pa = parse(a);
|
||||||
|
final Person pb = parse(b);
|
||||||
|
|
||||||
|
if (pa.isAccurate() & pb.isAccurate()) {
|
||||||
|
return new JaroWinkler()
|
||||||
|
.score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString()));
|
||||||
|
} else {
|
||||||
|
return new JaroWinkler()
|
||||||
|
.score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname()));
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private static boolean hasPid(Author a) {
|
||||||
|
if (a == null || a.getPid() == null || a.getPid().size() == 0)
|
||||||
|
return false;
|
||||||
|
return a.getPid().stream().anyMatch(p -> p != null && StringUtils.isNotBlank(p.getValue()));
|
||||||
|
}
|
||||||
|
|
||||||
|
private static Person parse(Author author) {
|
||||||
|
if (StringUtils.isNotBlank(author.getSurname())) {
|
||||||
|
return new Person(author.getSurname() + ", " + author.getName(), false);
|
||||||
|
} else {
|
||||||
|
return new Person(author.getFullname(), false);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
private static String normalize(final String s) {
|
||||||
|
return nfd(s)
|
||||||
|
.toLowerCase()
|
||||||
|
// do not compact the regexes in a single expression, would cause StackOverflowError
|
||||||
|
// in case
|
||||||
|
// of large input strings
|
||||||
|
.replaceAll("(\\W)+", " ")
|
||||||
|
.replaceAll("(\\p{InCombiningDiacriticalMarks})+", " ")
|
||||||
|
.replaceAll("(\\p{Punct})+", " ")
|
||||||
|
.replaceAll("(\\d)+", " ")
|
||||||
|
.replaceAll("(\\n)+", " ")
|
||||||
|
.trim();
|
||||||
|
}
|
||||||
|
|
||||||
|
private static String nfd(final String s) {
|
||||||
|
return Normalizer.normalize(s, Normalizer.Form.NFD);
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -1,8 +1,9 @@
|
||||||
|
|
||||||
package eu.dnetlib.dhp.oa.dedup;
|
package eu.dnetlib.dhp.oa.dedup;
|
||||||
|
|
||||||
|
import java.io.Serializable;
|
||||||
import java.util.Collection;
|
import java.util.Collection;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
import org.apache.spark.api.java.function.MapFunction;
|
import org.apache.spark.api.java.function.MapFunction;
|
||||||
import org.apache.spark.api.java.function.MapGroupsFunction;
|
import org.apache.spark.api.java.function.MapGroupsFunction;
|
||||||
|
@ -67,16 +68,18 @@ public class DedupRecordFactory {
|
||||||
(MapFunction<Tuple2<String, T>, String>) entity -> entity._1(), Encoders.STRING())
|
(MapFunction<Tuple2<String, T>, String>) entity -> entity._1(), Encoders.STRING())
|
||||||
.mapGroups(
|
.mapGroups(
|
||||||
(MapGroupsFunction<String, Tuple2<String, T>, T>) (key,
|
(MapGroupsFunction<String, Tuple2<String, T>, T>) (key,
|
||||||
values) -> entityMerger(key, values, ts, dataInfo),
|
values) -> entityMerger(key, values, ts, dataInfo, clazz),
|
||||||
Encoders.bean(clazz));
|
Encoders.bean(clazz));
|
||||||
}
|
}
|
||||||
|
|
||||||
private static <T extends OafEntity> T entityMerger(
|
public static <T extends OafEntity> T entityMerger(
|
||||||
String id, Iterator<Tuple2<String, T>> entities, long ts, DataInfo dataInfo) {
|
String id, Iterator<Tuple2<String, T>> entities, long ts, DataInfo dataInfo, Class<T> clazz) throws IllegalAccessException, InstantiationException {
|
||||||
|
|
||||||
T entity = entities.next()._2();
|
T entity = clazz.newInstance();
|
||||||
|
|
||||||
final Collection<String> dates = Lists.newArrayList();
|
final Collection<String> dates = Lists.newArrayList();
|
||||||
|
final List<List<Author>> authors = Lists.newArrayList();
|
||||||
|
|
||||||
entities
|
entities
|
||||||
.forEachRemaining(
|
.forEachRemaining(
|
||||||
t -> {
|
t -> {
|
||||||
|
@ -84,17 +87,17 @@ public class DedupRecordFactory {
|
||||||
entity.mergeFrom(duplicate);
|
entity.mergeFrom(duplicate);
|
||||||
if (ModelSupport.isSubClass(duplicate, Result.class)) {
|
if (ModelSupport.isSubClass(duplicate, Result.class)) {
|
||||||
Result r1 = (Result) duplicate;
|
Result r1 = (Result) duplicate;
|
||||||
Result er = (Result) entity;
|
if (r1.getAuthor() != null && r1.getAuthor().size()>0)
|
||||||
er.setAuthor(DedupUtility.mergeAuthor(er.getAuthor(), r1.getAuthor()));
|
authors.add(r1.getAuthor());
|
||||||
|
if (r1.getDateofacceptance() != null)
|
||||||
if (r1.getDateofacceptance() != null) {
|
|
||||||
dates.add(r1.getDateofacceptance().getValue());
|
dates.add(r1.getDateofacceptance().getValue());
|
||||||
}
|
}
|
||||||
}
|
|
||||||
});
|
});
|
||||||
|
|
||||||
|
//set authors and date
|
||||||
if (ModelSupport.isSubClass(entity, Result.class)) {
|
if (ModelSupport.isSubClass(entity, Result.class)) {
|
||||||
((Result) entity).setDateofacceptance(DatePicker.pick(dates));
|
((Result) entity).setDateofacceptance(DatePicker.pick(dates));
|
||||||
|
((Result) entity).setAuthor(AuthorMerger.merge(authors));
|
||||||
}
|
}
|
||||||
|
|
||||||
entity.setId(id);
|
entity.setId(id);
|
||||||
|
|
|
@ -32,7 +32,6 @@ import eu.dnetlib.pace.model.Person;
|
||||||
import scala.Tuple2;
|
import scala.Tuple2;
|
||||||
|
|
||||||
public class DedupUtility {
|
public class DedupUtility {
|
||||||
private static final Double THRESHOLD = 0.95;
|
|
||||||
|
|
||||||
public static Map<String, LongAccumulator> constructAccumulator(
|
public static Map<String, LongAccumulator> constructAccumulator(
|
||||||
final DedupConfig dedupConf, final SparkContext context) {
|
final DedupConfig dedupConf, final SparkContext context) {
|
||||||
|
@ -82,61 +81,6 @@ public class DedupUtility {
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
public static List<Author> mergeAuthor(final List<Author> a, final List<Author> b) {
|
|
||||||
int pa = countAuthorsPids(a);
|
|
||||||
int pb = countAuthorsPids(b);
|
|
||||||
List<Author> base, enrich;
|
|
||||||
int sa = authorsSize(a);
|
|
||||||
int sb = authorsSize(b);
|
|
||||||
|
|
||||||
if (pa == pb) {
|
|
||||||
base = sa > sb ? a : b;
|
|
||||||
enrich = sa > sb ? b : a;
|
|
||||||
} else {
|
|
||||||
base = pa > pb ? a : b;
|
|
||||||
enrich = pa > pb ? b : a;
|
|
||||||
}
|
|
||||||
enrichPidFromList(base, enrich);
|
|
||||||
return base;
|
|
||||||
}
|
|
||||||
|
|
||||||
private static void enrichPidFromList(List<Author> base, List<Author> enrich) {
|
|
||||||
if (base == null || enrich == null)
|
|
||||||
return;
|
|
||||||
final Map<String, Author> basePidAuthorMap = base
|
|
||||||
.stream()
|
|
||||||
.filter(a -> a.getPid() != null && a.getPid().size() > 0)
|
|
||||||
.flatMap(a -> a.getPid().stream().map(p -> new Tuple2<>(p.toComparableString(), a)))
|
|
||||||
.collect(Collectors.toMap(Tuple2::_1, Tuple2::_2, (x1, x2) -> x1));
|
|
||||||
|
|
||||||
final List<Tuple2<StructuredProperty, Author>> pidToEnrich = enrich
|
|
||||||
.stream()
|
|
||||||
.filter(a -> a.getPid() != null && a.getPid().size() > 0)
|
|
||||||
.flatMap(
|
|
||||||
a -> a
|
|
||||||
.getPid()
|
|
||||||
.stream()
|
|
||||||
.filter(p -> !basePidAuthorMap.containsKey(p.toComparableString()))
|
|
||||||
.map(p -> new Tuple2<>(p, a)))
|
|
||||||
.collect(Collectors.toList());
|
|
||||||
|
|
||||||
pidToEnrich
|
|
||||||
.forEach(
|
|
||||||
a -> {
|
|
||||||
Optional<Tuple2<Double, Author>> simAuhtor = base
|
|
||||||
.stream()
|
|
||||||
.map(ba -> new Tuple2<>(sim(ba, a._2()), ba))
|
|
||||||
.max(Comparator.comparing(Tuple2::_1));
|
|
||||||
if (simAuhtor.isPresent() && simAuhtor.get()._1() > THRESHOLD) {
|
|
||||||
Author r = simAuhtor.get()._2();
|
|
||||||
if (r.getPid() == null) {
|
|
||||||
r.setPid(new ArrayList<>());
|
|
||||||
}
|
|
||||||
r.getPid().add(a._1());
|
|
||||||
}
|
|
||||||
});
|
|
||||||
}
|
|
||||||
|
|
||||||
public static String createDedupRecordPath(
|
public static String createDedupRecordPath(
|
||||||
final String basePath, final String actionSetId, final String entityType) {
|
final String basePath, final String actionSetId, final String entityType) {
|
||||||
return String.format("%s/%s/%s_deduprecord", basePath, actionSetId, entityType);
|
return String.format("%s/%s/%s_deduprecord", basePath, actionSetId, entityType);
|
||||||
|
@ -156,65 +100,6 @@ public class DedupUtility {
|
||||||
return String.format("%s/%s/%s_mergerel", basePath, actionSetId, entityType);
|
return String.format("%s/%s/%s_mergerel", basePath, actionSetId, entityType);
|
||||||
}
|
}
|
||||||
|
|
||||||
private static Double sim(Author a, Author b) {
|
|
||||||
|
|
||||||
final Person pa = parse(a);
|
|
||||||
final Person pb = parse(b);
|
|
||||||
|
|
||||||
if (pa.isAccurate() & pb.isAccurate()) {
|
|
||||||
return new JaroWinkler()
|
|
||||||
.score(normalize(pa.getSurnameString()), normalize(pb.getSurnameString()));
|
|
||||||
} else {
|
|
||||||
return new JaroWinkler()
|
|
||||||
.score(normalize(pa.getNormalisedFullname()), normalize(pb.getNormalisedFullname()));
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
private static String normalize(final String s) {
|
|
||||||
return nfd(s)
|
|
||||||
.toLowerCase()
|
|
||||||
// do not compact the regexes in a single expression, would cause StackOverflowError
|
|
||||||
// in case
|
|
||||||
// of large input strings
|
|
||||||
.replaceAll("(\\W)+", " ")
|
|
||||||
.replaceAll("(\\p{InCombiningDiacriticalMarks})+", " ")
|
|
||||||
.replaceAll("(\\p{Punct})+", " ")
|
|
||||||
.replaceAll("(\\d)+", " ")
|
|
||||||
.replaceAll("(\\n)+", " ")
|
|
||||||
.trim();
|
|
||||||
}
|
|
||||||
|
|
||||||
private static String nfd(final String s) {
|
|
||||||
return Normalizer.normalize(s, Normalizer.Form.NFD);
|
|
||||||
}
|
|
||||||
|
|
||||||
private static Person parse(Author author) {
|
|
||||||
if (StringUtils.isNotBlank(author.getSurname())) {
|
|
||||||
return new Person(author.getSurname() + ", " + author.getName(), false);
|
|
||||||
} else {
|
|
||||||
return new Person(author.getFullname(), false);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
private static int countAuthorsPids(List<Author> authors) {
|
|
||||||
if (authors == null)
|
|
||||||
return 0;
|
|
||||||
|
|
||||||
return (int) authors.stream().filter(DedupUtility::hasPid).count();
|
|
||||||
}
|
|
||||||
|
|
||||||
private static int authorsSize(List<Author> authors) {
|
|
||||||
if (authors == null)
|
|
||||||
return 0;
|
|
||||||
return authors.size();
|
|
||||||
}
|
|
||||||
|
|
||||||
private static boolean hasPid(Author a) {
|
|
||||||
if (a == null || a.getPid() == null || a.getPid().size() == 0)
|
|
||||||
return false;
|
|
||||||
return a.getPid().stream().anyMatch(p -> p != null && StringUtils.isNotBlank(p.getValue()));
|
|
||||||
}
|
|
||||||
|
|
||||||
public static List<DedupConfig> getConfigurations(String isLookUpUrl, String orchestrator)
|
public static List<DedupConfig> getConfigurations(String isLookUpUrl, String orchestrator)
|
||||||
throws ISLookUpException, DocumentException {
|
throws ISLookUpException, DocumentException {
|
||||||
final ISLookUpService isLookUpService = ISLookupClientFactory.getLookUpService(isLookUpUrl);
|
final ISLookUpService isLookUpService = ISLookupClientFactory.getLookUpService(isLookUpUrl);
|
||||||
|
|
|
@ -0,0 +1,138 @@
|
||||||
|
package eu.dnetlib.dhp.oa.dedup;
|
||||||
|
|
||||||
|
import java.io.BufferedReader;
|
||||||
|
import java.io.FileReader;
|
||||||
|
import java.io.IOException;
|
||||||
|
import java.io.Serializable;
|
||||||
|
import java.nio.file.Paths;
|
||||||
|
import java.util.*;
|
||||||
|
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.*;
|
||||||
|
import eu.dnetlib.pace.util.MapDocumentUtil;
|
||||||
|
import org.codehaus.jackson.map.ObjectMapper;
|
||||||
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
|
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import scala.Tuple2;
|
||||||
|
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
|
|
||||||
|
public class EntityMergerTest implements Serializable {
|
||||||
|
|
||||||
|
List<Tuple2<String, Publication>> publications;
|
||||||
|
|
||||||
|
String testEntityBasePath;
|
||||||
|
DataInfo dataInfo;
|
||||||
|
String dedupId = "dedup_id";
|
||||||
|
Publication pub_top;
|
||||||
|
|
||||||
|
@BeforeEach
|
||||||
|
public void setUp() throws Exception {
|
||||||
|
|
||||||
|
testEntityBasePath = Paths
|
||||||
|
.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/json").toURI())
|
||||||
|
.toFile()
|
||||||
|
.getAbsolutePath();
|
||||||
|
|
||||||
|
publications = readSample(testEntityBasePath + "/publication_merge.json", Publication.class);
|
||||||
|
|
||||||
|
pub_top = getTopPub(publications);
|
||||||
|
|
||||||
|
dataInfo = setDI();
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void publicationMergerTest() throws InstantiationException, IllegalAccessException {
|
||||||
|
|
||||||
|
Publication pub_merged = DedupRecordFactory.entityMerger(dedupId, publications.iterator(), 0, dataInfo, Publication.class);
|
||||||
|
|
||||||
|
assertEquals(dedupId, pub_merged.getId());
|
||||||
|
|
||||||
|
assertEquals(pub_merged.getJournal(), pub_top.getJournal());
|
||||||
|
assertEquals(pub_merged.getBestaccessright(), pub_top.getBestaccessright());
|
||||||
|
assertEquals(pub_merged.getResulttype(), pub_top.getResulttype());
|
||||||
|
assertEquals(pub_merged.getLanguage(), pub_merged.getLanguage());
|
||||||
|
assertEquals(pub_merged.getPublisher(), pub_top.getPublisher());
|
||||||
|
assertEquals(pub_merged.getEmbargoenddate(), pub_top.getEmbargoenddate());
|
||||||
|
assertEquals(pub_merged.getResourcetype().getClassid(), "0004");
|
||||||
|
assertEquals(pub_merged.getDateoftransformation(), pub_top.getDateoftransformation());
|
||||||
|
assertEquals(pub_merged.getOaiprovenance(), pub_top.getOaiprovenance());
|
||||||
|
assertEquals(pub_merged.getDateofcollection(), pub_top.getDateofcollection());
|
||||||
|
assertEquals(pub_merged.getInstance().size(),3);
|
||||||
|
assertEquals(pub_merged.getCountry().size(), 2);
|
||||||
|
assertEquals(pub_merged.getSubject().size(), 0);
|
||||||
|
assertEquals(pub_merged.getTitle().size(), 2);
|
||||||
|
assertEquals(pub_merged.getRelevantdate().size(),0);
|
||||||
|
assertEquals(pub_merged.getDescription().size(),0);
|
||||||
|
assertEquals(pub_merged.getSource().size(),0);
|
||||||
|
assertEquals(pub_merged.getFulltext().size(),0);
|
||||||
|
assertEquals(pub_merged.getFormat().size(),0);
|
||||||
|
assertEquals(pub_merged.getContributor().size(),0);
|
||||||
|
assertEquals(pub_merged.getCoverage().size(),0);
|
||||||
|
assertEquals(pub_merged.getContext().size(),0);
|
||||||
|
assertEquals(pub_merged.getExternalReference().size(),0);
|
||||||
|
assertEquals(pub_merged.getOriginalId().size(),3);
|
||||||
|
assertEquals(pub_merged.getCollectedfrom().size(),3);
|
||||||
|
assertEquals(pub_merged.getPid().size(),1);
|
||||||
|
assertEquals(pub_merged.getExtraInfo().size(),0);
|
||||||
|
|
||||||
|
//verify datainfo
|
||||||
|
assertEquals(pub_merged.getDataInfo(), dataInfo);
|
||||||
|
|
||||||
|
//verify datepicker
|
||||||
|
assertEquals(pub_merged.getDateofacceptance().getValue(), "2018-09-30");
|
||||||
|
|
||||||
|
//verify authors
|
||||||
|
assertEquals(pub_merged.getAuthor().size(), 9);
|
||||||
|
assertEquals(AuthorMerger.countAuthorsPids(pub_merged.getAuthor()), 4);
|
||||||
|
}
|
||||||
|
|
||||||
|
public DataInfo setDI(){
|
||||||
|
DataInfo dataInfo = new DataInfo();
|
||||||
|
dataInfo.setTrust("0.9");
|
||||||
|
dataInfo.setDeletedbyinference(false);
|
||||||
|
dataInfo.setInferenceprovenance("testing");
|
||||||
|
dataInfo.setInferred(true);
|
||||||
|
return dataInfo;
|
||||||
|
}
|
||||||
|
|
||||||
|
public Publication getTopPub(List<Tuple2<String, Publication>> publications){
|
||||||
|
|
||||||
|
Double maxTrust = 0.0;
|
||||||
|
Publication maxPub = new Publication();
|
||||||
|
for (Tuple2<String, Publication> publication : publications) {
|
||||||
|
Double pubTrust = Double.parseDouble(publication._2().getDataInfo().getTrust());
|
||||||
|
if(pubTrust > maxTrust){
|
||||||
|
maxTrust = pubTrust;
|
||||||
|
maxPub = publication._2();
|
||||||
|
}
|
||||||
|
}
|
||||||
|
return maxPub;
|
||||||
|
}
|
||||||
|
|
||||||
|
public <T> List<Tuple2<String, T>> readSample(String path, Class<T> clazz) {
|
||||||
|
List<Tuple2<String, T>> res = new ArrayList<>();
|
||||||
|
BufferedReader reader;
|
||||||
|
try {
|
||||||
|
reader = new BufferedReader(new FileReader(path));
|
||||||
|
String line = reader.readLine();
|
||||||
|
while (line != null) {
|
||||||
|
res.add(
|
||||||
|
new Tuple2<>(
|
||||||
|
MapDocumentUtil.getJPathString("$.id", line),
|
||||||
|
new ObjectMapper().readValue(line, clazz))
|
||||||
|
);
|
||||||
|
// read next line
|
||||||
|
line = reader.readLine();
|
||||||
|
}
|
||||||
|
reader.close();
|
||||||
|
} catch (IOException e) {
|
||||||
|
e.printStackTrace();
|
||||||
|
}
|
||||||
|
|
||||||
|
return res;
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
}
|
|
@ -1,54 +0,0 @@
|
||||||
|
|
||||||
package eu.dnetlib.dhp.oa.dedup;
|
|
||||||
|
|
||||||
import java.io.IOException;
|
|
||||||
import java.util.Arrays;
|
|
||||||
import java.util.List;
|
|
||||||
import java.util.stream.Collectors;
|
|
||||||
|
|
||||||
import org.apache.commons.io.IOUtils;
|
|
||||||
import org.codehaus.jackson.map.ObjectMapper;
|
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
|
||||||
|
|
||||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
|
||||||
|
|
||||||
public class MergeAuthorTest {
|
|
||||||
|
|
||||||
private List<Publication> publicationsToMerge;
|
|
||||||
private final ObjectMapper mapper = new ObjectMapper();
|
|
||||||
|
|
||||||
@BeforeEach
|
|
||||||
public void setUp() throws Exception {
|
|
||||||
final String json = IOUtils
|
|
||||||
.toString(
|
|
||||||
this.getClass().getResourceAsStream("/eu/dnetlib/dhp/dedup/json/authors_merge.json"));
|
|
||||||
|
|
||||||
publicationsToMerge = Arrays
|
|
||||||
.asList(json.split("\n"))
|
|
||||||
.stream()
|
|
||||||
.map(
|
|
||||||
s -> {
|
|
||||||
try {
|
|
||||||
return mapper.readValue(s, Publication.class);
|
|
||||||
} catch (IOException e) {
|
|
||||||
throw new RuntimeException(e);
|
|
||||||
}
|
|
||||||
})
|
|
||||||
.collect(Collectors.toList());
|
|
||||||
}
|
|
||||||
|
|
||||||
// FIX ME Michele DB this tests doesn't work
|
|
||||||
// @Test
|
|
||||||
public void test() throws Exception {
|
|
||||||
Publication dedup = new Publication();
|
|
||||||
|
|
||||||
publicationsToMerge
|
|
||||||
.forEach(
|
|
||||||
p -> {
|
|
||||||
dedup.mergeFrom(p);
|
|
||||||
dedup.setAuthor(DedupUtility.mergeAuthor(dedup.getAuthor(), p.getAuthor()));
|
|
||||||
});
|
|
||||||
|
|
||||||
System.out.println(mapper.writeValueAsString(dedup));
|
|
||||||
}
|
|
||||||
}
|
|
File diff suppressed because one or more lines are too long
|
@ -22,12 +22,13 @@ SELECT
|
||||||
'' AS inferenceprovenance,
|
'' AS inferenceprovenance,
|
||||||
d.id AS collectedfromid,
|
d.id AS collectedfromid,
|
||||||
d.officialname AS collectedfromname,
|
d.officialname AS collectedfromname,
|
||||||
o.country || '@@@' || o.country || '@@@dnet:countries@@@dnet:countries' AS country,
|
o.country || '@@@' || COALESCE(cntr.name,o.country) || '@@@dnet:countries@@@dnet:countries' AS country,
|
||||||
'sysimport:crosswalk:entityregistry@@@sysimport:crosswalk:entityregistry@@@dnet:provenance_actions@@@dnet:provenance_actions' AS provenanceaction,
|
'sysimport:crosswalk:entityregistry@@@sysimport:crosswalk:entityregistry@@@dnet:provenance_actions@@@dnet:provenance_actions' AS provenanceaction,
|
||||||
|
|
||||||
ARRAY[]::text[] AS pid
|
ARRAY[]::text[] AS pid
|
||||||
|
|
||||||
FROM dsm_organizations o
|
FROM dsm_organizations o
|
||||||
LEFT OUTER JOIN dsm_datasources d ON (d.id = o.collectedfrom)
|
LEFT OUTER JOIN dsm_datasources d ON (d.id = o.collectedfrom)
|
||||||
|
LEFT OUTER JOIN class cntr ON (cntr.code = o.country)
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
Loading…
Reference in New Issue